Clone Sequence Records
BS08995.5prime Sequence
372 bp (371 high quality bases) assembled on 2006-01-18
> BS08995.5prime
GAAGTTATCAGTCGACATGCCCATTCCATTTCGAAAAGAATGCCTTTTAA
ATTTCATTTACCGGTTTGTTAAGTTTCCTTCAGTTGTCCGATCCCCAAAA
TGCACCCAACCGCACCCGAATTACCCACCACAATCCCCAATCACAACTCC
CGCTTTTGAGTTCTGTTTTCGCTTTAAAAAAAAAAAAAAAAAAAAAGGAT
TAAAACAGGAAAATTCACTGGTTTCCATAGAGCCTACGAAAGCGAATTCG
AGACACATCTGTATAGAAAGCCATGCGCTCATTACTTTACCTACTCTCTG
TCATACTTTGTTTTCTAATTCAATTTCGTGGATGTCAACAAGAAAGGATT
TCAGCTAAAAGCTTTCTAGACC
BS08995.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31182-PA | 342 | CG31182-RA | 1..342 | 17..358 | 1710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-12 20:09:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:09:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21327286..21327628 | 359..17 | 1715 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 20:09:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G3 | 4605 | G3 G3 4605bp | 3119..3252 | 174..307 | 102 | 55.9 | Plus |
BS08995.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:56:13 Download gff for
BS08995.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31182-PA | 1..342 | 17..358 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:01:21 Download gff for
BS08995.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31182-PA | 1..342 | 17..358 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:47:29 Download gff for
BS08995.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21327282..21327628 | 17..365 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:47:29 Download gff for
BS08995.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21327282..21327628 | 17..365 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:24:49 Download gff for
BS08995.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17153004..17153350 | 17..365 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:24:49 Download gff for
BS08995.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17153004..17153350 | 17..365 | 99 | | Minus |
BS08995.3prime Sequence
372 bp (371 high quality bases) assembled on 2006-01-18
> BS08995.3prime
ATGGTCTAGAAAGCTTTTAGCTGAAATCCTTTCTTGTTGACATCCACGAA
ATTGAATTAGAAAACAAAGTATGACAGAGAGTAGGTAAAGTAATGAGCGC
ATGGCTTTCTATACAGATGTGTCTCGAATTCGCTTTCGTAGGCTCTATGG
AAACCAGTGAATTTTCCTGTTTTAATCCTTTTTTTTTTTTTTTTTTTTTA
AAGCGAAAACAGAACTCAAAAGCGGGAGTTGTGATTGGGGATTGTGGTGG
GTAATTCGGGTGCGGTTGGGTGCATTTTGGGGATCGGACAACTGAAGGAA
ACTTAACAAACCGGTAAATGAAATTTAAAAGGCATTCTTTTCGAAATGGA
ATGGGCATGTCGACTGATAACT
BS08995.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31182-PA | 342 | CG31182-RA | 1..342 | 358..17 | 1710 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-03 08:48:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:48:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21327286..21327628 | 16..358 | 1715 | 100 | Plus |
Blast to na_te.dros performed 2015-02-03 08:48:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G3 | 4605 | G3 G3 4605bp | 3119..3252 | 201..68 | 102 | 55.9 | Minus |
BS08995.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:56:12 Download gff for
BS08995.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31182-PA | 1..342 | 17..358 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:01:19 Download gff for
BS08995.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31182-PA | 1..342 | 17..358 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:56:03 Download gff for
BS08995.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21327282..21327628 | 10..358 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:56:03 Download gff for
BS08995.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21327282..21327628 | 10..358 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:41:43 Download gff for
BS08995.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17153004..17153350 | 10..358 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:41:43 Download gff for
BS08995.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17153004..17153350 | 10..358 | 99 | | Plus |
BS08995.complete Sequence
374 bp (374 high quality bases) assembled on 2006-01-25
> BS08995.complete
GAAGTTATCAGTCGACATGCCCATTCCATTTCGAAAAGAATGCCTTTTAA
ATTTCATTTACCGGTTTGTTAAGTTTCCTTCAGTTGTCCGATCCCCAAAA
TGCACCCAACCGCACCCGAATTACCCACCACAATCCCCAATCACAACTCC
CGCTTTTGAGTTCTGTTTTCGCTTTAAAAAAAAAAAAAAAAAAAAAGGAT
TAAAACAGGAAAATTCACTGGTTTCCATAGAGCCTACGAAAGCGAATTCG
AGACACATCTGTATAGAAAGCCATGCGCTCATTACTTTACCTACTCTCTG
TCATACTTTGTTTTCTAATTCAATTTCGTGGATGTCAACAAGAAAGGATT
TCAGCTAAAAGCTTTCTAGACCAT
BS08995.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-28 01:13:27 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 01:13:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21327286..21327628 | 359..17 | 1715 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:13:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G3 | 4605 | G3 G3 4605bp | 3119..3252 | 174..307 | 102 | 55.9 | Plus |
BS08995.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:16 Download gff for
BS08995.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6043-RD | 2120..2143 | 114..137 | 91 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-22 00:00:16 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:01 Download gff for
BS08995.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21327289..21327628 | 17..356 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:01 Download gff for
BS08995.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21327289..21327628 | 17..356 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:42:54 Download gff for
BS08995.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17153011..17153350 | 17..356 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:42:54 Download gff for
BS08995.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17153011..17153350 | 17..356 | 100 | | Minus |
BS08995.pep Sequence
Translation from 16 to 357
> BS08995.pep
MPIPFRKECLLNFIYRFVKFPSVVRSPKCTQPHPNYPPQSPITTPAFEFC
FRFKKKKKKKGLKQENSLVSIEPTKANSRHICIESHALITLPTLCHTLFS
NSISWMSTRKDFS*
Sequence BS08995.pep has no blast hits.