Clone BS08995 Report

Search the DGRC for BS08995

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:89
Well:95
Vector:pDNR-Dual
Associated Gene/Transcriptobsolete transcript model
Protein status:BS08995.pep: validated full length
Sequenced Size:16

Clone Sequence Records

BS08995.5prime Sequence

372 bp (371 high quality bases) assembled on 2006-01-18

> BS08995.5prime
GAAGTTATCAGTCGACATGCCCATTCCATTTCGAAAAGAATGCCTTTTAA
ATTTCATTTACCGGTTTGTTAAGTTTCCTTCAGTTGTCCGATCCCCAAAA
TGCACCCAACCGCACCCGAATTACCCACCACAATCCCCAATCACAACTCC
CGCTTTTGAGTTCTGTTTTCGCTTTAAAAAAAAAAAAAAAAAAAAAGGAT
TAAAACAGGAAAATTCACTGGTTTCCATAGAGCCTACGAAAGCGAATTCG
AGACACATCTGTATAGAAAGCCATGCGCTCATTACTTTACCTACTCTCTG
TCATACTTTGTTTTCTAATTCAATTTCGTGGATGTCAACAAGAAAGGATT
TCAGCTAAAAGCTTTCTAGACC

BS08995.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG31182-PA 342 CG31182-RA 1..342 17..358 1710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-12 20:09:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21327286..21327628 359..17 1715 100 Minus
Blast to na_te.dros performed 2015-02-12 20:09:37
Subject Length Description Subject Range Query Range Score Percent Strand
G3 4605 G3 G3 4605bp 3119..3252 174..307 102 55.9 Plus

BS08995.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:56:13 Download gff for BS08995.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31182-PA 1..342 17..358 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:01:21 Download gff for BS08995.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31182-PA 1..342 17..358 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:47:29 Download gff for BS08995.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21327282..21327628 17..365 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:47:29 Download gff for BS08995.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21327282..21327628 17..365 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:24:49 Download gff for BS08995.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17153004..17153350 17..365 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:24:49 Download gff for BS08995.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17153004..17153350 17..365 99   Minus

BS08995.3prime Sequence

372 bp (371 high quality bases) assembled on 2006-01-18

> BS08995.3prime
ATGGTCTAGAAAGCTTTTAGCTGAAATCCTTTCTTGTTGACATCCACGAA
ATTGAATTAGAAAACAAAGTATGACAGAGAGTAGGTAAAGTAATGAGCGC
ATGGCTTTCTATACAGATGTGTCTCGAATTCGCTTTCGTAGGCTCTATGG
AAACCAGTGAATTTTCCTGTTTTAATCCTTTTTTTTTTTTTTTTTTTTTA
AAGCGAAAACAGAACTCAAAAGCGGGAGTTGTGATTGGGGATTGTGGTGG
GTAATTCGGGTGCGGTTGGGTGCATTTTGGGGATCGGACAACTGAAGGAA
ACTTAACAAACCGGTAAATGAAATTTAAAAGGCATTCTTTTCGAAATGGA
ATGGGCATGTCGACTGATAACT

BS08995.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG31182-PA 342 CG31182-RA 1..342 358..17 1710 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-03 08:48:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21327286..21327628 16..358 1715 100 Plus
Blast to na_te.dros performed 2015-02-03 08:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
G3 4605 G3 G3 4605bp 3119..3252 201..68 102 55.9 Minus

BS08995.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:56:12 Download gff for BS08995.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31182-PA 1..342 17..358 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:01:19 Download gff for BS08995.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31182-PA 1..342 17..358 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:56:03 Download gff for BS08995.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21327282..21327628 10..358 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:56:03 Download gff for BS08995.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21327282..21327628 10..358 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:41:43 Download gff for BS08995.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17153004..17153350 10..358 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:41:43 Download gff for BS08995.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17153004..17153350 10..358 99   Plus

BS08995.complete Sequence

374 bp (374 high quality bases) assembled on 2006-01-25

> BS08995.complete
GAAGTTATCAGTCGACATGCCCATTCCATTTCGAAAAGAATGCCTTTTAA
ATTTCATTTACCGGTTTGTTAAGTTTCCTTCAGTTGTCCGATCCCCAAAA
TGCACCCAACCGCACCCGAATTACCCACCACAATCCCCAATCACAACTCC
CGCTTTTGAGTTCTGTTTTCGCTTTAAAAAAAAAAAAAAAAAAAAAGGAT
TAAAACAGGAAAATTCACTGGTTTCCATAGAGCCTACGAAAGCGAATTCG
AGACACATCTGTATAGAAAGCCATGCGCTCATTACTTTACCTACTCTCTG
TCATACTTTGTTTTCTAATTCAATTTCGTGGATGTCAACAAGAAAGGATT
TCAGCTAAAAGCTTTCTAGACCAT

BS08995.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-28 01:13:27 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 01:13:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21327286..21327628 359..17 1715 100 Minus
Blast to na_te.dros performed 2014-11-28 01:13:26
Subject Length Description Subject Range Query Range Score Percent Strand
G3 4605 G3 G3 4605bp 3119..3252 174..307 102 55.9 Plus

BS08995.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:16 Download gff for BS08995.complete
Subject Subject Range Query Range Percent Splice Strand
CG6043-RD 2120..2143 114..137 91   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-22 00:00:16 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:01 Download gff for BS08995.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21327289..21327628 17..356 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:01 Download gff for BS08995.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21327289..21327628 17..356 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:42:54 Download gff for BS08995.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17153011..17153350 17..356 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:42:54 Download gff for BS08995.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17153011..17153350 17..356 100   Minus

BS08995.pep Sequence

Translation from 16 to 357

> BS08995.pep
MPIPFRKECLLNFIYRFVKFPSVVRSPKCTQPHPNYPPQSPITTPAFEFC
FRFKKKKKKKGLKQENSLVSIEPTKANSRHICIESHALITLPTLCHTLFS
NSISWMSTRKDFS*
Sequence BS08995.pep has no blast hits.