Clone BS08996 Report

Search the DGRC for BS08996

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:89
Well:96
Vector:pDNR-Dual
Associated Gene/Transcriptx16-RA
Protein status:BS08996.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08996.3prime Sequence

807 bp (806 high quality bases) assembled on 2006-01-18

> BS08996.3prime
ATGGTCTAGAAAGCTTCTAGTCCCTTGAAACGGATCGTGAGGCGGACGAG
TCACCACGACGCCTGGGCGGCGATCCACGGCGCACCGCTGGCGACGCCGA
TCGAGATCGGGAACGCGACCGCGGCGATCCCCTAACCCGGTCATCGTCCT
CATCCTCATAGCGCCGTTTTGGCGGCGGCGGTGAATCTACCGCTCCACTG
CCGTTGCGCTCGTGGTCGCTGTACCTCGACGCCGATCCGTTCTCGTCCCG
TCCGTTCGAGCGGCCGGAGCGACGGCCCACCGAGCCGGCGGAGCGACTGC
GGGATCGAGTTCCGGACTTGGAGCGAGTGCGCCTGCGTCGCGATGTGCTC
CGAGATCTGCTGAATGAGTTGCTTCTGCGTCGCTGCCTGGCCTTCCTTTC
GCGACAGTGGCGAGCGAAATGCCCCCGTCCGCCGCACTCGTAGCACTTAT
CGTCCCCACGACCACCGCCGCCTCGGTCGCGTCCTCCGAGTCCTCCACCA
CCACCGCCTCCACCACCTCCGCCACCACCACCGCCGGACCTAGCATACTT
TCCGGTGGACAATTCCACACGGGCTCGGCGCCCGCAAACCGTCCGTCCGT
CCAATCCGCGCACCGCATCCGCCGCATCGCGGGCACTCTCAAACTCCACG
AAGGCGAAGCCCGGCGGATTGCGGGCTATCCAGACGCTGCGCAAACTGCC
GTACGCTCCAAATACATACTCCAGGTCGTTCTTCCGGGCATTGTTGCCCA
GATCGCCCACGTACACCTTTCTATCGCTCGGATGGCGCGACATGTCGACT
GATAACT

BS08996.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG10203-PA 777 xl6-RA 1..777 793..17 3885 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
x16-RA 1707 CG10203-RA 269..1045 793..17 3885 100 Minus
x16-RB 1784 CG10203-RB 269..1042 793..17 3830 99.6 Minus
Rbp1-like-RC 1456 CG1987-RC 298..354 694..638 180 87.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:03:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6919524..6919942 375..793 2095 100 Plus
2L 23513712 2L 6915043..6915403 17..377 1805 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:03:08 has no hits.

BS08996.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:56:14 Download gff for BS08996.3prime
Subject Subject Range Query Range Percent Splice Strand
xl6-PA 1..777 17..793 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:01:23 Download gff for BS08996.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10203-PA 1..777 17..793 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:31:43 Download gff for BS08996.3prime
Subject Subject Range Query Range Percent Splice Strand
x16-RA 264..1045 17..801 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:34:39 Download gff for BS08996.3prime
Subject Subject Range Query Range Percent Splice Strand
x16-RA 264..1045 17..801 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:34:39 Download gff for BS08996.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6919524..6919944 375..799 98 <- Plus
2L 6915043..6915400 17..374 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:31:43 Download gff for BS08996.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6915043..6915400 17..374 100 <- Plus
arm_2L 6919524..6919944 375..799 98 <- Plus

BS08996.5prime Sequence

807 bp (806 high quality bases) assembled on 2006-01-18

> BS08996.5prime
GAAGTTATCAGTCGACATGTCGCGCCATCCGAGCGATAGAAAGGTGTACG
TGGGCGATCTGGGCAACAATGCCCGGAAGAACGACCTGGAGTATGTATTT
GGAGCGTACGGCAGTTTGCGCAGCGTCTGGATAGCCCGCAATCCGCCGGG
CTTCGCCTTCGTGGAGTTTGAGAGTGCCCGCGATGCGGCGGATGCGGTGC
GCGGATTGGACGGACGGACGGTTTGCGGGCGCCGAGCCCGTGTGGAATTG
TCCACCGGAAAGTATGCTAGGTCCGGCGGTGGTGGTGGCGGAGGTGGTGG
AGGCGGTGGTGGTGGAGGACTCGGAGGACGCGACCGAGGCGGCGGTGGTC
GTGGGGACGATAAGTGCTACGAGTGCGGCGGACGGGGGCATTTCGCTCGC
CACTGTCGCGAAAGGAAGGCCAGGCAGCGACGCAGAAGCAACTCATTCAG
CAGATCTCGGAGCACATCGCGACGCAGGCGCACTCGCTCCAAGTCCGGAA
CTCGATCCCGCAGTCGCTCCGCCGGCTCGGTGGGCCGTCGCTCCGGCCGC
TCGAACGGACGGGACGAGAACGGATCGGCGTCGAGGTACAGCGACCACGA
GCGCAACGGCAGTGGAGCGGTAGATTCACCGCCGCCGCCAAAACGGCGCT
ATGAGGATGAGGACGATGACCGGGTTAGGGGATCGCCGCGGTCGCGTTCC
CGATCTCGATCGGCGTCGCCAGCGGTGCGCCGTGGATCGCCGCCCAGGCG
TCGTGGTGACTCGTCCGCCTCACGATCCGTTTCAAGGGACTAGAAGCTTT
CTAGACC

BS08996.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG10203-PA 777 xl6-RA 1..777 17..793 3885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
x16-RA 1707 CG10203-RA 269..1045 17..793 3885 100 Plus
x16-RB 1784 CG10203-RB 269..1042 17..793 3830 99.6 Plus
Rbp1-like-RC 1456 CG1987-RC 298..354 116..172 180 87.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6919524..6919942 435..17 2095 100 Minus
2L 23513712 2L 6915043..6915403 793..433 1805 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:29:37 has no hits.

BS08996.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:56:15 Download gff for BS08996.5prime
Subject Subject Range Query Range Percent Splice Strand
xl6-PA 1..777 17..793 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:01:24 Download gff for BS08996.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10203-PA 1..777 17..793 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:57:35 Download gff for BS08996.5prime
Subject Subject Range Query Range Percent Splice Strand
x16-RA 264..1045 9..793 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:24 Download gff for BS08996.5prime
Subject Subject Range Query Range Percent Splice Strand
x16-RA 264..1045 9..793 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:24 Download gff for BS08996.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6915043..6915400 436..793 100 <- Minus
2L 6919524..6919944 11..435 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:57:35 Download gff for BS08996.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6915043..6915400 436..793 100 <- Minus
arm_2L 6919524..6919944 11..435 98 <- Minus

BS08996.complete Sequence

809 bp (809 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636333

> BS08996.complete
GAAGTTATCAGTCGACATGTCGCGCCATCCGAGCGATAGAAAGGTGTACG
TGGGCGATCTGGGCAACAATGCCCGGAAGAACGACCTGGAGTATGTATTT
GGAGCGTACGGCAGTTTGCGCAGCGTCTGGATAGCCCGCAATCCGCCGGG
CTTCGCCTTCGTGGAGTTTGAGAGTGCCCGCGATGCGGCGGATGCGGTGC
GCGGATTGGACGGACGGACGGTTTGCGGGCGCCGAGCCCGTGTGGAATTG
TCCACCGGAAAGTATGCTAGGTCCGGCGGTGGTGGTGGCGGAGGTGGTGG
AGGCGGTGGTGGTGGAGGACTCGGAGGACGCGACCGAGGCGGCGGTGGTC
GTGGGGACGATAAGTGCTACGAGTGCGGCGGACGGGGGCATTTCGCTCGC
CACTGTCGCGAAAGGAAGGCCAGGCAGCGACGCAGAAGCAACTCATTCAG
CAGATCTCGGAGCACATCGCGACGCAGGCGCACTCGCTCCAAGTCCGGAA
CTCGATCCCGCAGTCGCTCCGCCGGCTCGGTGGGCCGTCGCTCCGGCCGC
TCGAACGGACGGGACGAGAACGGATCGGCGTCGAGGTACAGCGACCACGA
GCGCAACGGCAGTGGAGCGGTAGATTCACCGCCGCCGCCAAAACGGCGCT
ATGAGGATGAGGACGATGACCGGGTTAGGGGATCGCCGCGGTCGCGTTCC
CGATCTCGATCGGCGTCGCCAGCGGTGCGCCGTGGATCGCCGCCCAGGCG
TCGTGGTGACTCGTCCGCCTCACGATCCGTTTCAAGGGACTAGAAGCTTT
CTAGACCAT

BS08996.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
x16-RA 777 CG10203-PA 1..777 17..793 3885 100 Plus
x16-RB 774 CG10203-PB 1..774 17..793 3805 99.6 Plus
Rbp1-like-RC 477 CG1987-PC 109..165 116..172 180 87.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:03:25
Subject Length Description Subject Range Query Range Score Percent Strand
x16-RA 1707 CG10203-RA 269..1045 17..793 3885 100 Plus
x16-RB 1784 CG10203-RB 269..1042 17..793 3805 99.6 Plus
Rbp1-like-RC 1456 CG1987-RC 298..354 116..172 180 87.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:03:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6919524..6919942 435..17 2095 100 Minus
2L 23513712 2L 6915043..6915403 793..433 1805 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:03:23 has no hits.

BS08996.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:17 Download gff for BS08996.complete
Subject Subject Range Query Range Percent Splice Strand
xl6-RA 1..777 17..793 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:11 Download gff for BS08996.complete
Subject Subject Range Query Range Percent Splice Strand
xl6-RA 328..1109 9..793 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:29 Download gff for BS08996.complete
Subject Subject Range Query Range Percent Splice Strand
x16-RA 269..1045 17..793 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:17 Download gff for BS08996.complete
Subject Subject Range Query Range Percent Splice Strand
xl6-RA 328..1109 9..793 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:02 Download gff for BS08996.complete
Subject Subject Range Query Range Percent Splice Strand
x16-RA 269..1045 17..793 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:02 Download gff for BS08996.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6915043..6915400 436..793 100 <- Minus
2L 6919524..6919942 17..435 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:29 Download gff for BS08996.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6915043..6915400 436..793 100 <- Minus
arm_2L 6919524..6919942 17..435 100   Minus

BS08996.pep Sequence

Translation from 16 to 792

> BS08996.pep
MSRHPSDRKVYVGDLGNNARKNDLEYVFGAYGSLRSVWIARNPPGFAFVE
FESARDAADAVRGLDGRTVCGRRARVELSTGKYARSGGGGGGGGGGGGGG
GLGGRDRGGGGRGDDKCYECGGRGHFARHCRERKARQRRRSNSFSRSRST
SRRRRTRSKSGTRSRSRSAGSVGRRSGRSNGRDENGSASRYSDHERNGSG
AVDSPPPPKRRYEDEDDDRVRGSPRSRSRSRSASPAVRRGSPPRRRGDSS
ASRSVSRD*

BS08996.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:25:27
Subject Length Description Subject Range Query Range Score Percent Strand
x16-PA 258 CG10203-PA 1..258 1..258 1361 100 Plus
x16-PB 257 CG10203-PB 1..257 1..258 1344 99.6 Plus
Rbp1-like-PC 158 CG1987-PC 12..157 9..163 403 55.5 Plus
Rbp1-like-PA 158 CG1987-PA 12..157 9..163 403 55.5 Plus
Rbp1-like-PB 247 CG1987-PB 12..176 9..164 373 47.3 Plus