Clone Sequence Records
BS08996.3prime Sequence
807 bp (806 high quality bases) assembled on 2006-01-18
> BS08996.3prime
ATGGTCTAGAAAGCTTCTAGTCCCTTGAAACGGATCGTGAGGCGGACGAG
TCACCACGACGCCTGGGCGGCGATCCACGGCGCACCGCTGGCGACGCCGA
TCGAGATCGGGAACGCGACCGCGGCGATCCCCTAACCCGGTCATCGTCCT
CATCCTCATAGCGCCGTTTTGGCGGCGGCGGTGAATCTACCGCTCCACTG
CCGTTGCGCTCGTGGTCGCTGTACCTCGACGCCGATCCGTTCTCGTCCCG
TCCGTTCGAGCGGCCGGAGCGACGGCCCACCGAGCCGGCGGAGCGACTGC
GGGATCGAGTTCCGGACTTGGAGCGAGTGCGCCTGCGTCGCGATGTGCTC
CGAGATCTGCTGAATGAGTTGCTTCTGCGTCGCTGCCTGGCCTTCCTTTC
GCGACAGTGGCGAGCGAAATGCCCCCGTCCGCCGCACTCGTAGCACTTAT
CGTCCCCACGACCACCGCCGCCTCGGTCGCGTCCTCCGAGTCCTCCACCA
CCACCGCCTCCACCACCTCCGCCACCACCACCGCCGGACCTAGCATACTT
TCCGGTGGACAATTCCACACGGGCTCGGCGCCCGCAAACCGTCCGTCCGT
CCAATCCGCGCACCGCATCCGCCGCATCGCGGGCACTCTCAAACTCCACG
AAGGCGAAGCCCGGCGGATTGCGGGCTATCCAGACGCTGCGCAAACTGCC
GTACGCTCCAAATACATACTCCAGGTCGTTCTTCCGGGCATTGTTGCCCA
GATCGCCCACGTACACCTTTCTATCGCTCGGATGGCGCGACATGTCGACT
GATAACT
BS08996.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10203-PA | 777 | xl6-RA | 1..777 | 793..17 | 3885 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:03:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
x16-RA | 1707 | CG10203-RA | 269..1045 | 793..17 | 3885 | 100 | Minus |
x16-RB | 1784 | CG10203-RB | 269..1042 | 793..17 | 3830 | 99.6 | Minus |
Rbp1-like-RC | 1456 | CG1987-RC | 298..354 | 694..638 | 180 | 87.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:03:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6919524..6919942 | 375..793 | 2095 | 100 | Plus |
2L | 23513712 | 2L | 6915043..6915403 | 17..377 | 1805 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:03:08 has no hits.
BS08996.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:56:14 Download gff for
BS08996.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
xl6-PA | 1..777 | 17..793 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:01:23 Download gff for
BS08996.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10203-PA | 1..777 | 17..793 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:31:43 Download gff for
BS08996.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
x16-RA | 264..1045 | 17..801 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:34:39 Download gff for
BS08996.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
x16-RA | 264..1045 | 17..801 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:34:39 Download gff for
BS08996.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6919524..6919944 | 375..799 | 98 | <- | Plus |
2L | 6915043..6915400 | 17..374 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:31:43 Download gff for
BS08996.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6915043..6915400 | 17..374 | 100 | <- | Plus |
arm_2L | 6919524..6919944 | 375..799 | 98 | <- | Plus |
BS08996.5prime Sequence
807 bp (806 high quality bases) assembled on 2006-01-18
> BS08996.5prime
GAAGTTATCAGTCGACATGTCGCGCCATCCGAGCGATAGAAAGGTGTACG
TGGGCGATCTGGGCAACAATGCCCGGAAGAACGACCTGGAGTATGTATTT
GGAGCGTACGGCAGTTTGCGCAGCGTCTGGATAGCCCGCAATCCGCCGGG
CTTCGCCTTCGTGGAGTTTGAGAGTGCCCGCGATGCGGCGGATGCGGTGC
GCGGATTGGACGGACGGACGGTTTGCGGGCGCCGAGCCCGTGTGGAATTG
TCCACCGGAAAGTATGCTAGGTCCGGCGGTGGTGGTGGCGGAGGTGGTGG
AGGCGGTGGTGGTGGAGGACTCGGAGGACGCGACCGAGGCGGCGGTGGTC
GTGGGGACGATAAGTGCTACGAGTGCGGCGGACGGGGGCATTTCGCTCGC
CACTGTCGCGAAAGGAAGGCCAGGCAGCGACGCAGAAGCAACTCATTCAG
CAGATCTCGGAGCACATCGCGACGCAGGCGCACTCGCTCCAAGTCCGGAA
CTCGATCCCGCAGTCGCTCCGCCGGCTCGGTGGGCCGTCGCTCCGGCCGC
TCGAACGGACGGGACGAGAACGGATCGGCGTCGAGGTACAGCGACCACGA
GCGCAACGGCAGTGGAGCGGTAGATTCACCGCCGCCGCCAAAACGGCGCT
ATGAGGATGAGGACGATGACCGGGTTAGGGGATCGCCGCGGTCGCGTTCC
CGATCTCGATCGGCGTCGCCAGCGGTGCGCCGTGGATCGCCGCCCAGGCG
TCGTGGTGACTCGTCCGCCTCACGATCCGTTTCAAGGGACTAGAAGCTTT
CTAGACC
BS08996.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10203-PA | 777 | xl6-RA | 1..777 | 17..793 | 3885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:29:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
x16-RA | 1707 | CG10203-RA | 269..1045 | 17..793 | 3885 | 100 | Plus |
x16-RB | 1784 | CG10203-RB | 269..1042 | 17..793 | 3830 | 99.6 | Plus |
Rbp1-like-RC | 1456 | CG1987-RC | 298..354 | 116..172 | 180 | 87.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:29:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6919524..6919942 | 435..17 | 2095 | 100 | Minus |
2L | 23513712 | 2L | 6915043..6915403 | 793..433 | 1805 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:29:37 has no hits.
BS08996.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:56:15 Download gff for
BS08996.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
xl6-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:01:24 Download gff for
BS08996.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10203-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:57:35 Download gff for
BS08996.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
x16-RA | 264..1045 | 9..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:24 Download gff for
BS08996.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
x16-RA | 264..1045 | 9..793 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:24 Download gff for
BS08996.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6915043..6915400 | 436..793 | 100 | <- | Minus |
2L | 6919524..6919944 | 11..435 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:57:35 Download gff for
BS08996.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6915043..6915400 | 436..793 | 100 | <- | Minus |
arm_2L | 6919524..6919944 | 11..435 | 98 | <- | Minus |
BS08996.complete Sequence
809 bp (809 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636333
> BS08996.complete
GAAGTTATCAGTCGACATGTCGCGCCATCCGAGCGATAGAAAGGTGTACG
TGGGCGATCTGGGCAACAATGCCCGGAAGAACGACCTGGAGTATGTATTT
GGAGCGTACGGCAGTTTGCGCAGCGTCTGGATAGCCCGCAATCCGCCGGG
CTTCGCCTTCGTGGAGTTTGAGAGTGCCCGCGATGCGGCGGATGCGGTGC
GCGGATTGGACGGACGGACGGTTTGCGGGCGCCGAGCCCGTGTGGAATTG
TCCACCGGAAAGTATGCTAGGTCCGGCGGTGGTGGTGGCGGAGGTGGTGG
AGGCGGTGGTGGTGGAGGACTCGGAGGACGCGACCGAGGCGGCGGTGGTC
GTGGGGACGATAAGTGCTACGAGTGCGGCGGACGGGGGCATTTCGCTCGC
CACTGTCGCGAAAGGAAGGCCAGGCAGCGACGCAGAAGCAACTCATTCAG
CAGATCTCGGAGCACATCGCGACGCAGGCGCACTCGCTCCAAGTCCGGAA
CTCGATCCCGCAGTCGCTCCGCCGGCTCGGTGGGCCGTCGCTCCGGCCGC
TCGAACGGACGGGACGAGAACGGATCGGCGTCGAGGTACAGCGACCACGA
GCGCAACGGCAGTGGAGCGGTAGATTCACCGCCGCCGCCAAAACGGCGCT
ATGAGGATGAGGACGATGACCGGGTTAGGGGATCGCCGCGGTCGCGTTCC
CGATCTCGATCGGCGTCGCCAGCGGTGCGCCGTGGATCGCCGCCCAGGCG
TCGTGGTGACTCGTCCGCCTCACGATCCGTTTCAAGGGACTAGAAGCTTT
CTAGACCAT
BS08996.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:03:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
x16-RA | 777 | CG10203-PA | 1..777 | 17..793 | 3885 | 100 | Plus |
x16-RB | 774 | CG10203-PB | 1..774 | 17..793 | 3805 | 99.6 | Plus |
Rbp1-like-RC | 477 | CG1987-PC | 109..165 | 116..172 | 180 | 87.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:03:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
x16-RA | 1707 | CG10203-RA | 269..1045 | 17..793 | 3885 | 100 | Plus |
x16-RB | 1784 | CG10203-RB | 269..1042 | 17..793 | 3805 | 99.6 | Plus |
Rbp1-like-RC | 1456 | CG1987-RC | 298..354 | 116..172 | 180 | 87.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:03:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6919524..6919942 | 435..17 | 2095 | 100 | Minus |
2L | 23513712 | 2L | 6915043..6915403 | 793..433 | 1805 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:03:23 has no hits.
BS08996.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:17 Download gff for
BS08996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
xl6-RA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:11 Download gff for
BS08996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
xl6-RA | 328..1109 | 9..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:29 Download gff for
BS08996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
x16-RA | 269..1045 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:17 Download gff for
BS08996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
xl6-RA | 328..1109 | 9..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:02 Download gff for
BS08996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
x16-RA | 269..1045 | 17..793 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:02 Download gff for
BS08996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6915043..6915400 | 436..793 | 100 | <- | Minus |
2L | 6919524..6919942 | 17..435 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:29 Download gff for
BS08996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6915043..6915400 | 436..793 | 100 | <- | Minus |
arm_2L | 6919524..6919942 | 17..435 | 100 | | Minus |
BS08996.pep Sequence
Translation from 16 to 792
> BS08996.pep
MSRHPSDRKVYVGDLGNNARKNDLEYVFGAYGSLRSVWIARNPPGFAFVE
FESARDAADAVRGLDGRTVCGRRARVELSTGKYARSGGGGGGGGGGGGGG
GLGGRDRGGGGRGDDKCYECGGRGHFARHCRERKARQRRRSNSFSRSRST
SRRRRTRSKSGTRSRSRSAGSVGRRSGRSNGRDENGSASRYSDHERNGSG
AVDSPPPPKRRYEDEDDDRVRGSPRSRSRSRSASPAVRRGSPPRRRGDSS
ASRSVSRD*
BS08996.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:25:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
x16-PA | 258 | CG10203-PA | 1..258 | 1..258 | 1361 | 100 | Plus |
x16-PB | 257 | CG10203-PB | 1..257 | 1..258 | 1344 | 99.6 | Plus |
Rbp1-like-PC | 158 | CG1987-PC | 12..157 | 9..163 | 403 | 55.5 | Plus |
Rbp1-like-PA | 158 | CG1987-PA | 12..157 | 9..163 | 403 | 55.5 | Plus |
Rbp1-like-PB | 247 | CG1987-PB | 12..176 | 9..164 | 373 | 47.3 | Plus |