Clone BS09001 Report

Search the DGRC for BS09001

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:90
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptSelD-RA
Protein status:BS09001.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09001.3prime Sequence

868 bp (867 high quality bases) assembled on 2006-01-24

> BS09001.3prime
ATGGTCTAGAAAGCTTCTAGTCCTTGGCGGGCACCTCAATGACGCGGGGC
TTGTCGATGATGCGTGCGGTCTTATTGCCCTTCTCAACGATGCCGATGAT
CCAGGCCTGGTAGCCCTCCTGCTTCTCGATGTCCTTGCAATAAGCAGCGG
CCTGCTCTCGCGGCAGGCAGATCAGTAATCCTCCCGAGGTCTCCGCCGAG
TGGCCCTGCAGCAGCTGGAACATGTTGCCGCAGGCTTTGGCCACTGCAGC
CATCTTGGCGATCACCGGCAGATTGTGGATAACAAAGGAGACATCCTTTT
TCTGATGTGCAGCCAGGGTTTGAGCGTGGCCTAGTAGTCCGAATCCAGTA
ATATCGGTGGCTCCGTGGGCATTGTACTTGTGCATGAGGCGAGCGGCTAC
GCGGTTGAGGCGAGCCATAGAGTTCATCGCCCGGTGGTAGGCCTTGCGTA
CATCTTCTTCGGACACCACCAGCTTAATGCGGTTCCAGCGCTCCGGCTGG
TCAATCCACTGGTGGGCATTCACGGCCACTTGGGTGCCCAGTGGCTTGGT
TAGCACCAGTACATCCCCTACCACGGCATTATCTGGCACAATATACTCAT
TTGGCTGGCAAATGGTCGAGGCAACCCCACCAATGGTGCACCACGGATTG
ACCACGCTCTGGCCTCCAGTCACAGTGGTGCCTGCCTCCAAAGCGGAGTC
CTTAAAGCCTCGCATTATCAGCGGAATGACCACGTCACGCTCCTTCTCTG
TCATCTTGGTACTGACCGCCAACAGCATCAGCATGTTATCGCAATCTGTG
ACTCCCATGGCATACAAATCGCTGAGCACATTGGCGCACGCATTTTTTGC
CATCATGTANGGATCATC

BS09001.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8553-PB 1197 SelD-RB 346..1197 868..17 4166 99.5 Minus
CG8553-PA 1197 SelD-RA 346..1197 868..17 4166 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:32:59
Subject Length Description Subject Range Query Range Score Percent Strand
SelD-RA 1521 CG8553-RA 476..1327 868..17 4204 99.5 Minus
SelD-RB 1887 CG8553-RB 842..1693 868..17 4204 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:32:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14268966..14269817 17..868 4204 99.5 Plus
Blast to na_te.dros performed on 2015-02-03 08:32:54 has no hits.

BS09001.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:56:16 Download gff for BS09001.3prime
Subject Subject Range Query Range Percent Splice Strand
SelD-PA 346..1197 17..868 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:01:26 Download gff for BS09001.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8553-PA 346..1197 17..868 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:39:46 Download gff for BS09001.3prime
Subject Subject Range Query Range Percent Splice Strand
SelD-RB 842..1698 9..868 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:54:13 Download gff for BS09001.3prime
Subject Subject Range Query Range Percent Splice Strand
SelD-RB 842..1698 9..868 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:54:13 Download gff for BS09001.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14268961..14269817 9..868 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:39:46 Download gff for BS09001.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10156466..10157322 9..868 99   Plus

BS09001.5prime Sequence

947 bp (846 high quality bases) assembled on 2006-01-24

> BS09001.5prime
GAAGTTATCAGTCGACATGAGCTACGCCGCTGATGTGCTGAACTCGGCCC
ATTTGGAGCTCCATGGTGGTGGCGACGCCGAGTTGCGTCGTCCATTCGAT
CCCACGGCCCATGATTTGGATGCATCCTTCCGCCTTACACGCTTCGCAGA
TCTAAAGGGGCGCGGCTGCAAAGTGCCGCAGGATGTGCTCTCCAAGCTGG
TGTCCGCCCTGCAGCAGGACTACTCTGCCCAGGACCAGGAACCGCAGTTT
CTCAACGTGGCCATTCCCCGCATCGGTATTGGCCTGGACTGCTCCGTCAT
TCCGCTGCGACACGGCGGACTCTGCCTGGTGCAGACCACCGATTTCTTTT
ACCCCATTGTCGATGATCCCTACATGATGGGCAAAATTGCGTGCGCCAAT
GTGCTCAGCGATTTGTATGCCATGGGAGTCACAGATTGCGATAACATGCT
GATGCTGTTGGCGGTCAGTACCAAGATGACAGAGAAGGAGCGTGACGTGG
TCATTCCGCTGATAATGCGAGGCTTTAAGGACTCCGCTTTGGAGGCAGGC
ACCACTGTGACTGGAGGCCAGAGCGTGGTCAATCCGTGGTGCACCATTGG
TGGGGTTGCCTCGACCATTTGCCAGCCAAATGAGTATATTGTGCCAGATA
ATGCCGTGGTAGGGGATGTACTGGTGCTAACCAAGCCACTGGGCACCCAA
GTGGCCGTGAATGCCCACCAGTGGATTGACCAGCCGGAGCGCTGGAACCG
CATTAAGCTGGTGGTGTCCGAAGAAGATGTACGCAAGGCCTACCACCGGG
CGATGAACTCTATGGCTCGCCTCAACCGCGTAGCCGCTCGCCTCATGCAC
AAGTACAATGCCCACGGAGCCACCGATATTACTGGATTCGGACTACTAGG
CCACGCTCAAACCCTGGCTGCACATCAGAAAAAAGATGTCTCCTTTT

BS09001.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG8553-PB 1197 SelD-RB 1..930 17..946 4625 99.8 Plus
CG8553-PA 1197 SelD-RA 1..930 17..946 4625 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
SelD-RA 1521 CG8553-RA 131..1060 17..946 4635 99.9 Plus
SelD-RB 1887 CG8553-RB 497..1426 17..946 4635 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:50:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14269233..14270162 946..17 4635 99.9 Minus
Blast to na_te.dros performed on 2015-02-04 03:51:01 has no hits.

BS09001.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:56:17 Download gff for BS09001.5prime
Subject Subject Range Query Range Percent Splice Strand
SelD-PA 1..930 17..947 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:01:28 Download gff for BS09001.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8553-PA 1..930 17..947 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:57:17 Download gff for BS09001.5prime
Subject Subject Range Query Range Percent Splice Strand
SelD-RB 486..1426 6..947 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:32:19 Download gff for BS09001.5prime
Subject Subject Range Query Range Percent Splice Strand
SelD-RB 486..1426 6..947 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:32:19 Download gff for BS09001.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14269231..14270171 6..947 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:57:17 Download gff for BS09001.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10156736..10157676 6..947 99   Minus

BS09001.complete Sequence

1229 bp (1229 high quality bases) assembled on 2006-02-16

> BS09001.complete
GAAGTTATCAGTCGACATGAGCTACGCCGCTGATGTGCTGAACTCGGCCC
ATTTGGAGCTCCATGGTGGTGGCGACGCCGAGTTGCGTCGTCCATTCGAT
CCCACGGCCCATGATTTGGATGCATCCTTCCGCCTTACACGCTTCGCAGA
TCTAAAGGGGCGCGGCTGCAAAGTGCCGCAGGATGTGCTCTCCAAGCTGG
TGTCCGCCCTGCAGCAGGACTACTCTGCCCAGGACCAGGAACCGCAGTTT
CTCAACGTGGCCATTCCCCGCATCGGTATTGGCCTGGACTGCTCCGTCAT
TCCGCTGCGACACGGCGGACTCTGCCTGGTGCAGACCACCGATTTCTTTT
ACCCCATTGTCGATGATCCCTACATGATGGGCAAAATTGCGTGCGCCAAT
GTGCTCAGCGATTTGTATGCCATGGGAGTCACAGATTGCGATAACATGCT
GATGCTGTTGGCGGTCAGTACCAAGATGACAGAGAAGGAGCGTGACGTGG
TCATTCCGCTGATAATGCGAGGCTTTAAGGACTCCGCTTTGGAGGCAGGC
ACCACTGTGACTGGAGGCCAGAGCGTGGTCAATCCGTGGTGCACCATTGG
TGGGGTTGCCTCGACCATTTGCCAGCCAAATGAGTATATTGTGCCAGATA
ATGCCGTGGTAGGGGATGTACTGGTGCTAACCAAGCCACTGGGCACCCAA
GTGGCCGTGAATGCCCACCAGTGGATTGACCAGCCGGAGCGCTGGAACCG
CATTAAGCTGGTGGTGTCCGAAGAAGATGTACGCAAGGCCTACCACCGGG
CGATGAACTCTATGGCTCGCCTCAACCGCGTAGCCGCTCGCCTCATGCAC
AAGTACAATGCCCACGGAGCCACCGATATTACTGGATTCGGACTACTAGG
CCACGCTCAAACCCTGGCTGCACATCAGAAAAAGGATGTCTCCTTTGTTA
TCCACAATCTGCCGGTGATCGCCAAGATGGCTGCAGTGGCCAAAGCCTGC
GGCAACATGTTCCAGCTGCTGCAGGGCCACTCGGCGGAGACCTCGGGAGG
ATTACTGATCTGCCTGCCGCGAGAGCAGGCCGCTGCTTATTGCAAGGACA
TCGAGAAGCAGGAGGGCTACCAGGCCTGGATCATCGGCATCGTTGAGAAG
GGCAATAAGACCGCACGCATCATCGACAAGCCCCGCGTCATTGAGGTGCC
CGCCAAGGACTAGAAGCTTTCTAGACCAT

BS09001.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
SelD-RA 1197 CG8553-PA 1..1197 17..1213 5985 100 Plus
SelD-RB 1197 CG8553-PB 1..1197 17..1213 5985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:41:50
Subject Length Description Subject Range Query Range Score Percent Strand
SelD-RA 1521 CG8553-RA 131..1327 17..1213 5985 100 Plus
SelD-RB 1887 CG8553-RB 497..1693 17..1213 5985 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14268966..14270162 1213..17 5985 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:41:47 has no hits.

BS09001.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:22 Download gff for BS09001.complete
Subject Subject Range Query Range Percent Splice Strand
SelD-RA 1..1197 17..1213 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:06 Download gff for BS09001.complete
Subject Subject Range Query Range Percent Splice Strand
SelD-RA 116..1328 6..1221 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:29 Download gff for BS09001.complete
Subject Subject Range Query Range Percent Splice Strand
SelD-RB 497..1693 17..1213 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:22 Download gff for BS09001.complete
Subject Subject Range Query Range Percent Splice Strand
SelD-RA 116..1328 6..1221 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:33 Download gff for BS09001.complete
Subject Subject Range Query Range Percent Splice Strand
SelD-RB 497..1693 17..1213 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:33 Download gff for BS09001.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14268966..14270162 17..1213 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:29 Download gff for BS09001.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10156471..10157667 17..1213 100   Minus

BS09001.pep Sequence

Translation from 16 to 1212

> BS09001.pep
MSYAADVLNSAHLELHGGGDAELRRPFDPTAHDLDASFRLTRFADLKGRG
CKVPQDVLSKLVSALQQDYSAQDQEPQFLNVAIPRIGIGLDCSVIPLRHG
GLCLVQTTDFFYPIVDDPYMMGKIACANVLSDLYAMGVTDCDNMLMLLAV
STKMTEKERDVVIPLIMRGFKDSALEAGTTVTGGQSVVNPWCTIGGVAST
ICQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWIDQPERWNRIKLVV
SEEDVRKAYHRAMNSMARLNRVAARLMHKYNAHGATDITGFGLLGHAQTL
AAHQKKDVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICL
PREQAAAYCKDIEKQEGYQAWIIGIVEKGNKTARIIDKPRVIEVPAKD*

BS09001.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:08:28
Subject Length Description Subject Range Query Range Score Percent Strand
SelD-PA 398 CG8553-PA 1..398 1..398 2073 100 Plus
SelD-PB 398 CG8553-PB 1..398 1..398 2073 100 Plus
Sps2-PC 370 CG5025-PC 2..359 27..386 796 45.2 Plus
Sps2-PA 370 CG5025-PA 2..359 27..386 796 45.2 Plus