Clone Sequence Records
BS09001.3prime Sequence
868 bp (867 high quality bases) assembled on 2006-01-24
> BS09001.3prime
ATGGTCTAGAAAGCTTCTAGTCCTTGGCGGGCACCTCAATGACGCGGGGC
TTGTCGATGATGCGTGCGGTCTTATTGCCCTTCTCAACGATGCCGATGAT
CCAGGCCTGGTAGCCCTCCTGCTTCTCGATGTCCTTGCAATAAGCAGCGG
CCTGCTCTCGCGGCAGGCAGATCAGTAATCCTCCCGAGGTCTCCGCCGAG
TGGCCCTGCAGCAGCTGGAACATGTTGCCGCAGGCTTTGGCCACTGCAGC
CATCTTGGCGATCACCGGCAGATTGTGGATAACAAAGGAGACATCCTTTT
TCTGATGTGCAGCCAGGGTTTGAGCGTGGCCTAGTAGTCCGAATCCAGTA
ATATCGGTGGCTCCGTGGGCATTGTACTTGTGCATGAGGCGAGCGGCTAC
GCGGTTGAGGCGAGCCATAGAGTTCATCGCCCGGTGGTAGGCCTTGCGTA
CATCTTCTTCGGACACCACCAGCTTAATGCGGTTCCAGCGCTCCGGCTGG
TCAATCCACTGGTGGGCATTCACGGCCACTTGGGTGCCCAGTGGCTTGGT
TAGCACCAGTACATCCCCTACCACGGCATTATCTGGCACAATATACTCAT
TTGGCTGGCAAATGGTCGAGGCAACCCCACCAATGGTGCACCACGGATTG
ACCACGCTCTGGCCTCCAGTCACAGTGGTGCCTGCCTCCAAAGCGGAGTC
CTTAAAGCCTCGCATTATCAGCGGAATGACCACGTCACGCTCCTTCTCTG
TCATCTTGGTACTGACCGCCAACAGCATCAGCATGTTATCGCAATCTGTG
ACTCCCATGGCATACAAATCGCTGAGCACATTGGCGCACGCATTTTTTGC
CATCATGTANGGATCATC
BS09001.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8553-PB | 1197 | SelD-RB | 346..1197 | 868..17 | 4166 | 99.5 | Minus |
CG8553-PA | 1197 | SelD-RA | 346..1197 | 868..17 | 4166 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:32:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SelD-RA | 1521 | CG8553-RA | 476..1327 | 868..17 | 4204 | 99.5 | Minus |
SelD-RB | 1887 | CG8553-RB | 842..1693 | 868..17 | 4204 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:32:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14268966..14269817 | 17..868 | 4204 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-03 08:32:54 has no hits.
BS09001.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:56:16 Download gff for
BS09001.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SelD-PA | 346..1197 | 17..868 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:01:26 Download gff for
BS09001.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8553-PA | 346..1197 | 17..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:39:46 Download gff for
BS09001.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SelD-RB | 842..1698 | 9..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:54:13 Download gff for
BS09001.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SelD-RB | 842..1698 | 9..868 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:54:13 Download gff for
BS09001.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14268961..14269817 | 9..868 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:39:46 Download gff for
BS09001.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10156466..10157322 | 9..868 | 99 | | Plus |
BS09001.5prime Sequence
947 bp (846 high quality bases) assembled on 2006-01-24
> BS09001.5prime
GAAGTTATCAGTCGACATGAGCTACGCCGCTGATGTGCTGAACTCGGCCC
ATTTGGAGCTCCATGGTGGTGGCGACGCCGAGTTGCGTCGTCCATTCGAT
CCCACGGCCCATGATTTGGATGCATCCTTCCGCCTTACACGCTTCGCAGA
TCTAAAGGGGCGCGGCTGCAAAGTGCCGCAGGATGTGCTCTCCAAGCTGG
TGTCCGCCCTGCAGCAGGACTACTCTGCCCAGGACCAGGAACCGCAGTTT
CTCAACGTGGCCATTCCCCGCATCGGTATTGGCCTGGACTGCTCCGTCAT
TCCGCTGCGACACGGCGGACTCTGCCTGGTGCAGACCACCGATTTCTTTT
ACCCCATTGTCGATGATCCCTACATGATGGGCAAAATTGCGTGCGCCAAT
GTGCTCAGCGATTTGTATGCCATGGGAGTCACAGATTGCGATAACATGCT
GATGCTGTTGGCGGTCAGTACCAAGATGACAGAGAAGGAGCGTGACGTGG
TCATTCCGCTGATAATGCGAGGCTTTAAGGACTCCGCTTTGGAGGCAGGC
ACCACTGTGACTGGAGGCCAGAGCGTGGTCAATCCGTGGTGCACCATTGG
TGGGGTTGCCTCGACCATTTGCCAGCCAAATGAGTATATTGTGCCAGATA
ATGCCGTGGTAGGGGATGTACTGGTGCTAACCAAGCCACTGGGCACCCAA
GTGGCCGTGAATGCCCACCAGTGGATTGACCAGCCGGAGCGCTGGAACCG
CATTAAGCTGGTGGTGTCCGAAGAAGATGTACGCAAGGCCTACCACCGGG
CGATGAACTCTATGGCTCGCCTCAACCGCGTAGCCGCTCGCCTCATGCAC
AAGTACAATGCCCACGGAGCCACCGATATTACTGGATTCGGACTACTAGG
CCACGCTCAAACCCTGGCTGCACATCAGAAAAAAGATGTCTCCTTTT
BS09001.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8553-PB | 1197 | SelD-RB | 1..930 | 17..946 | 4625 | 99.8 | Plus |
CG8553-PA | 1197 | SelD-RA | 1..930 | 17..946 | 4625 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:51:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SelD-RA | 1521 | CG8553-RA | 131..1060 | 17..946 | 4635 | 99.9 | Plus |
SelD-RB | 1887 | CG8553-RB | 497..1426 | 17..946 | 4635 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:50:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14269233..14270162 | 946..17 | 4635 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-04 03:51:01 has no hits.
BS09001.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:56:17 Download gff for
BS09001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SelD-PA | 1..930 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:01:28 Download gff for
BS09001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8553-PA | 1..930 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:57:17 Download gff for
BS09001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SelD-RB | 486..1426 | 6..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:32:19 Download gff for
BS09001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SelD-RB | 486..1426 | 6..947 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:32:19 Download gff for
BS09001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14269231..14270171 | 6..947 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:57:17 Download gff for
BS09001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10156736..10157676 | 6..947 | 99 | | Minus |
BS09001.complete Sequence
1229 bp (1229 high quality bases) assembled on 2006-02-16
> BS09001.complete
GAAGTTATCAGTCGACATGAGCTACGCCGCTGATGTGCTGAACTCGGCCC
ATTTGGAGCTCCATGGTGGTGGCGACGCCGAGTTGCGTCGTCCATTCGAT
CCCACGGCCCATGATTTGGATGCATCCTTCCGCCTTACACGCTTCGCAGA
TCTAAAGGGGCGCGGCTGCAAAGTGCCGCAGGATGTGCTCTCCAAGCTGG
TGTCCGCCCTGCAGCAGGACTACTCTGCCCAGGACCAGGAACCGCAGTTT
CTCAACGTGGCCATTCCCCGCATCGGTATTGGCCTGGACTGCTCCGTCAT
TCCGCTGCGACACGGCGGACTCTGCCTGGTGCAGACCACCGATTTCTTTT
ACCCCATTGTCGATGATCCCTACATGATGGGCAAAATTGCGTGCGCCAAT
GTGCTCAGCGATTTGTATGCCATGGGAGTCACAGATTGCGATAACATGCT
GATGCTGTTGGCGGTCAGTACCAAGATGACAGAGAAGGAGCGTGACGTGG
TCATTCCGCTGATAATGCGAGGCTTTAAGGACTCCGCTTTGGAGGCAGGC
ACCACTGTGACTGGAGGCCAGAGCGTGGTCAATCCGTGGTGCACCATTGG
TGGGGTTGCCTCGACCATTTGCCAGCCAAATGAGTATATTGTGCCAGATA
ATGCCGTGGTAGGGGATGTACTGGTGCTAACCAAGCCACTGGGCACCCAA
GTGGCCGTGAATGCCCACCAGTGGATTGACCAGCCGGAGCGCTGGAACCG
CATTAAGCTGGTGGTGTCCGAAGAAGATGTACGCAAGGCCTACCACCGGG
CGATGAACTCTATGGCTCGCCTCAACCGCGTAGCCGCTCGCCTCATGCAC
AAGTACAATGCCCACGGAGCCACCGATATTACTGGATTCGGACTACTAGG
CCACGCTCAAACCCTGGCTGCACATCAGAAAAAGGATGTCTCCTTTGTTA
TCCACAATCTGCCGGTGATCGCCAAGATGGCTGCAGTGGCCAAAGCCTGC
GGCAACATGTTCCAGCTGCTGCAGGGCCACTCGGCGGAGACCTCGGGAGG
ATTACTGATCTGCCTGCCGCGAGAGCAGGCCGCTGCTTATTGCAAGGACA
TCGAGAAGCAGGAGGGCTACCAGGCCTGGATCATCGGCATCGTTGAGAAG
GGCAATAAGACCGCACGCATCATCGACAAGCCCCGCGTCATTGAGGTGCC
CGCCAAGGACTAGAAGCTTTCTAGACCAT
BS09001.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:41:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SelD-RA | 1197 | CG8553-PA | 1..1197 | 17..1213 | 5985 | 100 | Plus |
SelD-RB | 1197 | CG8553-PB | 1..1197 | 17..1213 | 5985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:41:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SelD-RA | 1521 | CG8553-RA | 131..1327 | 17..1213 | 5985 | 100 | Plus |
SelD-RB | 1887 | CG8553-RB | 497..1693 | 17..1213 | 5985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:41:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14268966..14270162 | 1213..17 | 5985 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:41:47 has no hits.
BS09001.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:22 Download gff for
BS09001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SelD-RA | 1..1197 | 17..1213 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:06 Download gff for
BS09001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SelD-RA | 116..1328 | 6..1221 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:29 Download gff for
BS09001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SelD-RB | 497..1693 | 17..1213 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:22 Download gff for
BS09001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SelD-RA | 116..1328 | 6..1221 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:33 Download gff for
BS09001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SelD-RB | 497..1693 | 17..1213 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:33 Download gff for
BS09001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14268966..14270162 | 17..1213 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:29 Download gff for
BS09001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10156471..10157667 | 17..1213 | 100 | | Minus |
BS09001.pep Sequence
Translation from 16 to 1212
> BS09001.pep
MSYAADVLNSAHLELHGGGDAELRRPFDPTAHDLDASFRLTRFADLKGRG
CKVPQDVLSKLVSALQQDYSAQDQEPQFLNVAIPRIGIGLDCSVIPLRHG
GLCLVQTTDFFYPIVDDPYMMGKIACANVLSDLYAMGVTDCDNMLMLLAV
STKMTEKERDVVIPLIMRGFKDSALEAGTTVTGGQSVVNPWCTIGGVAST
ICQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWIDQPERWNRIKLVV
SEEDVRKAYHRAMNSMARLNRVAARLMHKYNAHGATDITGFGLLGHAQTL
AAHQKKDVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICL
PREQAAAYCKDIEKQEGYQAWIIGIVEKGNKTARIIDKPRVIEVPAKD*
BS09001.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:08:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SelD-PA | 398 | CG8553-PA | 1..398 | 1..398 | 2073 | 100 | Plus |
SelD-PB | 398 | CG8553-PB | 1..398 | 1..398 | 2073 | 100 | Plus |
Sps2-PC | 370 | CG5025-PC | 2..359 | 27..386 | 796 | 45.2 | Plus |
Sps2-PA | 370 | CG5025-PA | 2..359 | 27..386 | 796 | 45.2 | Plus |