Clone BS09006 Report

Search the DGRC for BS09006

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:90
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptHIP-RA
Protein status:BS09006.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09006.3prime Sequence

886 bp (826 high quality bases) assembled on 2006-01-24

> BS09006.3prime
ATGGTCTAGAAAGCTTTTAGTCCAAACCGTCATCGACGAAGTCGGCGGAG
TCCTTTTTAGGCTTAGGCTCGCTCGGCTTTCCAGCCTTTTCACCCGCTTG
GCCAAAGGCAGCACCCACATCTCCACCGGGCACAATCTTCTTGATAAGGT
TGTATATCTTCGGGTTCGACGCGTACTTTGTGATGTTACCCGGATTTGAC
AAAATGTCCTGAATGGCGGCTGACACCTCGGGATCTGACATGGCGCCCAG
TATATCAGACATATTTCCGTTACCAGGATTCCCACCGGAAAATTCTCCAG
ATGATCCACCAGAGCTGGCATTGTGCTTTTCCTGCTCCTTACGTGCGCGC
CTCTGATCCCGCTGGCGTTCCTTGATCTTACGCTCTGCCTGGCGACGCTC
CTGCTTCAAGCGATGCTGCTCGATTTTCTTGGCATTCGGAGTGACCTCCT
TTAGCCACTCGTCTGTCTCCTCGTCAAAGTCCAGCTTGCATGCTTGGCGC
AAATCATGGGCAGCCAGCTCAAAATCTCCGAGGAGGCGACGGGCGCGTCC
CCTGAACTTGTAGCCAGCCGCCAAATCCGAGTTGAGTTCCAGCGCCACGT
CGCAGTCCCGAATGCAGGCATTCGGCTTCTTCAGCTTGAGGAAGGCCTGA
CCACGCTTAGCGTGGAAAAGGGCATTACCCGGGCTCAGTTCAATGGCCTT
GGTGTACAAGGCGATGGCCTCGTCGAACTTCTGCTGGCCGTAAGCGGAGG
CCGCCTGGGCGCGCAGCTCGCTCGCCTGCTCCACCTCCTCTTCGGTGGCC
TTCTTGCTGTAGTTGCCCATGGGTTGGGCGGGGTCGCTGTCCGCCTCGAT
CACACCCTCCATGTCCAGCTCCACGTCCGACTCAAG

BS09006.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG2947-PA 1134 CG2947-RA 267..1134 884..17 4340 100 Minus
CG2947-PB 1134 CG2947-RB 267..1134 884..17 4340 100 Minus
CG32789-PA 1134 CG32789-RA 267..1134 884..17 4315 99.8 Minus
CG2947-PC 846 CG2947-RC 1..846 862..17 4230 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
HIP-R-RD 2006 CG2947-RD 330..1197 884..17 4340 100 Minus
HIP-R-RB 2065 CG2947-RB 389..1256 884..17 4340 100 Minus
HIP-R-RA 2085 CG2947-RA 409..1276 884..17 4340 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:09:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3790755..3791403 856..208 3245 100 Minus
X 23542271 X 3799838..3800486 856..208 3245 100 Minus
X 23542271 X 3791475..3791668 210..17 970 100 Minus
X 23542271 X 3800558..3800751 210..17 955 99.5 Minus
Blast to na_te.dros performed on 2015-02-06 10:09:29 has no hits.

BS09006.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:56:24 Download gff for BS09006.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2947-PB 265..1134 17..886 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:01:37 Download gff for BS09006.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2947-PB 265..1134 17..886 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:25:03 Download gff for BS09006.3prime
Subject Subject Range Query Range Percent Splice Strand
HIP-R-RA 407..1284 5..886 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:35:31 Download gff for BS09006.3prime
Subject Subject Range Query Range Percent Splice Strand
HIP-R-RA 407..1284 5..886 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:35:31 Download gff for BS09006.3prime
Subject Subject Range Query Range Percent Splice Strand
X 3790508..3790538 856..886 96 -> Minus
X 3790756..3791402 209..855 100 -> Minus
X 3791477..3791669 14..208 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:25:03 Download gff for BS09006.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3684541..3684571 856..886 96 -> Minus
arm_X 3684789..3685435 209..855 100 -> Minus
arm_X 3685510..3685702 14..208 98 -> Minus

BS09006.5prime Sequence

918 bp (833 high quality bases) assembled on 2006-01-24

> BS09006.5prime
GAAGTTATCAGTCGACATGGCTTTCACAATGCAAACCGGGGATCTGAAGA
AGCTGAAGTACTTCATCGACTTTGCGCTTGAGAATCCCACCTTCTTGAAC
ATGCCGCAGCTGCAGTTCGTCAAAGATTTCGTGGAGAAGTTTGGTGGCAC
GGTGCCGCCTGGCCAATTCAACGGTGGCAGCGCCGGAGGCAAGTGCCCAT
TCGGCGGTGTTGCTGGTGCCAAGGCCAACGAGCCGGCCAATGCCCCCGAG
GATAGCGAGGACGAAAAGTCCCTCTCCGATCCTGAGTCGGACGTGGAGCT
GGACATGGAGGGTGTGATCGAGGCGGACAGCGACCCCGCCCAACCCATGG
GCAACTACAGCAAGAAGGCCACCGAAGAGGAGGTGGAGCAGGCGAGCGAG
CTGCGCGCCCAGGCGGCCTCCGCTTACGGCCAGCAGAAGTTCGACGAGGC
CATCGCCTTGTACACCAAGGCCATTGAACTGAGCCCGGGTAATGCCCTTT
TCCACGCTAAGCGTGGTCAGGCCTTCCTCAAGCTGAAGAAGCCGAATGCC
TGCATTCGGGACTGCGACGTGGCGCTGGAACTCAACTCGGATTTGGCGGC
TGGCTACAAGTTCAGGGGACGCGCCCGTCGCCTCCTCGGAGATTTTGAGC
TGGCTGCCCATGATTTGCGCCAAGCATGCAAGCTGGACTTTGACGAGGAG
ACAGACGAGTGGCTAAAGGAGGTCACTCCGAATGCCAAGAAAATCGAGCA
GCATCGCTTGAAGCAGGAGCGTCGCCAGGCAGAGCGTAAGATCAAGGAAC
GCCAGCGGGATCAGAGGCGCGCACGTAAGGAGCAGGAAAAGCACAATGCC
AGCTCTGGTGGATCATCTGGAGAATTTTCCGGTGGGAATCCTGGTAACGG
AAATATGTCTGATATACT

BS09006.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG32789-PA 1134 CG32789-RA 1..902 17..918 4510 100 Plus
CG2947-PA 1134 CG2947-RA 1..902 17..918 4510 100 Plus
CG2947-PB 1134 CG2947-RB 1..902 17..918 4510 100 Plus
CG2947-PC 846 CG2947-RC 1..614 305..918 3070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
HIP-R-RD 2006 CG2947-RD 64..965 17..918 4510 100 Plus
HIP-R-RB 2065 CG2947-RB 123..1024 17..918 4510 100 Plus
HIP-R-RA 2085 CG2947-RA 143..1044 17..918 4510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3790755..3791362 311..918 3040 100 Plus
X 23542271 X 3799838..3800445 311..918 3040 100 Plus
X 23542271 X 3790164..3790336 17..189 865 100 Plus
X 23542271 X 3799247..3799419 17..189 865 100 Plus
X 23542271 X 3790416..3790541 189..314 630 100 Plus
X 23542271 X 3799499..3799624 189..314 630 100 Plus
Blast to na_te.dros performed on 2015-02-13 02:38:53 has no hits.

BS09006.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:56:25 Download gff for BS09006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32789-PA 1..902 17..918 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:01:39 Download gff for BS09006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2947-PB 1..902 17..918 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:14:24 Download gff for BS09006.5prime
Subject Subject Range Query Range Percent Splice Strand
HIP-R-RA 140..1044 14..918 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:39:03 Download gff for BS09006.5prime
Subject Subject Range Query Range Percent Splice Strand
HIP-R-RA 140..1044 14..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:39:03 Download gff for BS09006.5prime
Subject Subject Range Query Range Percent Splice Strand
X 3790161..3790336 14..189 99 -> Plus
X 3790417..3790538 190..311 100 -> Plus
X 3790756..3791362 312..918 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:14:24 Download gff for BS09006.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3684194..3684369 14..189 99 -> Plus
arm_X 3684450..3684571 190..311 100 -> Plus
arm_X 3684789..3685395 312..918 100   Plus

BS09006.complete Sequence

1166 bp (1166 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636334

> BS09006.complete
GAAGTTATCAGTCGACATGGCTTTCACAATGCAAACCGGGGATCTGAAGA
AGCTGAAGTACTTCATCGACTTTGCGCTTGAGAATCCCACCTTCTTGAAC
ATGCCGCAGCTGCAGTTCGTCAAAGATTTCGTGGAGAAGTTTGGTGGCAC
GGTGCCGCCTGGCCAATTCAACGGTGGCAGCGCCGGAGGCAAGTGCCCAT
TCGGCGGTGTTGCTGGTGCCAAGGCCAACGAGCCGGCCAATGCCCCCGAG
GATAGCGAGGACGAAAAGTCCCTCTCCGATCCTGAGTCGGACGTGGAGCT
GGACATGGAGGGTGTGATCGAGGCGGACAGCGACCCCGCCCAACCCATGG
GCAACTACAGCAAGAAGGCCACCGAAGAGGAGGTGGAGCAGGCGAGCGAG
CTGCGCGCCCAGGCGGCCTCCGCTTACGGCCAGCAGAAGTTCGACGAGGC
CATCGCCTTGTACACCAAGGCCATTGAACTGAGCCCGGGTAATGCCCTTT
TCCACGCTAAGCGTGGTCAGGCCTTCCTCAAGCTGAAGAAGCCGAATGCC
TGCATTCGGGACTGCGACGTGGCGCTGGAACTCAACTCGGATTTGGCGGC
TGGCTACAAGTTCAGGGGACGCGCCCGTCGCCTCCTCGGAGATTTTGAGC
TGGCTGCCCATGATTTGCGCCAAGCATGCAAGCTGGACTTTGACGAGGAG
ACAGACGAGTGGCTAAAGGAGGTCACTCCGAATGCCAAGAAAATCGAGCA
GCATCGCTTGAAGCAGGAGCGTCGCCAGGCAGAGCGTAAGATCAAGGAAC
GCCAGCGGGATCAGAGGCGCGCACGTAAGGAGCAGGAAAAGCACAATGCC
AGCTCTGGTGGATCATCTGGAGAATTTTCCGGTGGGAATCCTGGTAACGG
AAATATGTCTGATATACTGGGCGCCATGTCAGATCCCGAGGTGTCAGCCG
CCATTCAGGACATTTTGTCAAATCCGGGTAACATCACAAAGTACGCGTCG
AACCCGAAGATATACAACCTTATCAAGAAGATTGTGCCCGGTGGAGATGT
GGGTGCTGCCTTTGGCCAAGCGGGTGAAAAGGCTGGAAAGCCGAGCGAGC
CTAAGCCTAAAAAGGACTCCGCCGACTTCGTCGATGACGGTTTGGACTAA
AAGCTTTCTAGACCAT

BS09006.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
HIP-R-RD 1134 CG2947-PD 1..1134 17..1150 5670 100 Plus
HIP-R-RB 1134 CG2947-PB 1..1134 17..1150 5670 100 Plus
HIP-R-RA 1134 CG2947-PA 1..1134 17..1150 5670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:53:38
Subject Length Description Subject Range Query Range Score Percent Strand
HIP-R-RD 2006 CG2947-RD 64..1197 17..1150 5670 100 Plus
HIP-R-RB 2065 CG2947-RB 123..1256 17..1150 5670 100 Plus
HIP-R-RA 2085 CG2947-RA 143..1276 17..1150 5670 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3790755..3791403 311..959 3245 100 Plus
X 23542271 X 3799838..3800486 311..959 3245 100 Plus
X 23542271 X 3791475..3791668 957..1150 970 100 Plus
X 23542271 X 3800558..3800751 957..1150 955 99.5 Plus
X 23542271 X 3799247..3799419 17..189 865 100 Plus
X 23542271 X 3790164..3790336 17..189 865 100 Plus
X 23542271 X 3790416..3790541 189..314 630 100 Plus
X 23542271 X 3799499..3799624 189..314 630 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:53:36 has no hits.

BS09006.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:23 Download gff for BS09006.complete
Subject Subject Range Query Range Percent Splice Strand
CG2947-RB 1..1134 17..1150 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:08 Download gff for BS09006.complete
Subject Subject Range Query Range Percent Splice Strand
CG2947-RB 125..1269 14..1162 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:58 Download gff for BS09006.complete
Subject Subject Range Query Range Percent Splice Strand
HIP-R-RA 143..1274 17..1148 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:23 Download gff for BS09006.complete
Subject Subject Range Query Range Percent Splice Strand
CG2947-RB 125..1269 14..1162 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:17 Download gff for BS09006.complete
Subject Subject Range Query Range Percent Splice Strand
HIP-R-RA 143..1274 17..1148 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:17 Download gff for BS09006.complete
Subject Subject Range Query Range Percent Splice Strand
X 3790164..3790336 17..189 100 -> Plus
X 3790417..3790538 190..311 100 -> Plus
X 3790756..3791402 312..958 100 -> Plus
X 3791477..3791666 959..1148 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:58 Download gff for BS09006.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 3684197..3684369 17..189 100 -> Plus
arm_X 3684450..3684571 190..311 100 -> Plus
arm_X 3684789..3685435 312..958 100 -> Plus
arm_X 3685510..3685699 959..1148 100   Plus

BS09006.pep Sequence

Translation from 16 to 1149

> BS09006.pep
MAFTMQTGDLKKLKYFIDFALENPTFLNMPQLQFVKDFVEKFGGTVPPGQ
FNGGSAGGKCPFGGVAGAKANEPANAPEDSEDEKSLSDPESDVELDMEGV
IEADSDPAQPMGNYSKKATEEEVEQASELRAQAASAYGQQKFDEAIALYT
KAIELSPGNALFHAKRGQAFLKLKKPNACIRDCDVALELNSDLAAGYKFR
GRARRLLGDFELAAHDLRQACKLDFDEETDEWLKEVTPNAKKIEQHRLKQ
ERRQAERKIKERQRDQRRARKEQEKHNASSGGSSGEFSGGNPGNGNMSDI
LGAMSDPEVSAAIQDILSNPGNITKYASNPKIYNLIKKIVPGGDVGAAFG
QAGEKAGKPSEPKPKKDSADFVDDGLD*

BS09006.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:44:18
Subject Length Description Subject Range Query Range Score Percent Strand
HIP-R-PD 377 CG2947-PD 1..377 1..377 1955 100 Plus
HIP-R-PB 377 CG2947-PB 1..377 1..377 1955 100 Plus
HIP-R-PA 377 CG2947-PA 1..377 1..377 1955 100 Plus
HIP-PA 377 CG32789-PA 1..377 1..377 1955 100 Plus