Clone Sequence Records
BS09015.3prime Sequence
962 bp (773 high quality bases) assembled on 2006-01-24
> BS09015.3prime
ATGGTCTAGAAAGCTTCTACAGGTAGATTCGTCGCAGGTCCTTCGGCGTG
GTAATCGAGTTGCACTGCGGGCACAGCTTTCGCGCGCCGAGCGTCTGCAA
CCAACACTGCTCGCAGTGGACGTGCCAGCAGGACACGGAGATGGCGGGAT
TCTTGTAGTCGTCGATGCAGATCAGGCACTTGTACTTGCCCTGCGCCTGC
TTTTCGTAGAGCCGCAGCTTGGCCTTCAGCGATTCGATGATCTGCTGCTG
GTTTTGGGAGGTGGATCGCGTGGACCGCGACGTAGACGGCTCCTCGCTGG
CTGGTGGAGCCTCCACGTTGCTTGTGCTGGCAGGCTCTTGCTCGGTGGCT
TCGCTGGAATGGTTTGGCTTGGGCCCATCGCTGGAGGAGATAAGTCGGCG
CACGTAGCTGGTAACATCCGCCTCGGAAACATTTCCCTCTGTGTCCTCGT
TGACCAGTGGGATCACATCGCCCTCGCCATACTGCGTAGGACCATAGATG
TGAGTGTCATCCTCGTCCACGTTGAGATCTTCGTCCTCGTCGTCCTGCGC
CTGCTGACTGCCATTGTATTTGATTCTCTGGCCCAGGCCCAGGGCGGAAT
AGCCTCCTTGCACGAGAGTGGAGACGCGAATGCGCTTCTGTCCCGCCCAC
TCGTACTCTTCATATTCCTCGCTGTCCTCCGAGTCCTCACTCGAATGCCG
CTCACCATTGGCCTGACCATTGCGGCGGCTCTGGCGCAGGCAATGATTAA
CATGCTCTTGGATGTTGGACTGCGGAAAGTTGTGGTTGCACACGGGACAG
GTGGGTTGGCTCGATTCGGCAGCAGCTACGGACGGAGTTGCTGCAGCTGG
AGGAGGAGCAGCTGCTACCGTANGATTTACAGTTGCTGGTGGGGCAGGAG
AAAGCGGACGCTTCCTGGTGCGCTGGCGCTGACGGGGCTGCCGATTGCGC
TGCACCCGCTGG
BS09015.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4813-PA | 1197 | CG4813-RA | 252..1197 | 962..17 | 4636 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:59:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4813-RA | 1531 | CG4813-RA | 397..1343 | 962..16 | 4679 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:59:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22725072..22726018 | 16..962 | 4679 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:59:46 has no hits.
BS09015.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:56:36 Download gff for
BS09015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4813-PA | 252..1197 | 17..962 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:01:55 Download gff for
BS09015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4813-PA | 252..1197 | 17..962 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:23:12 Download gff for
BS09015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4813-RA | 365..1311 | 16..962 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:59:48 Download gff for
BS09015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4813-RA | 397..1343 | 16..962 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:59:48 Download gff for
BS09015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22725072..22726018 | 16..962 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:23:12 Download gff for
BS09015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18550794..18551740 | 16..962 | 99 | | Plus |
BS09015.5prime Sequence
911 bp (878 high quality bases) assembled on 2006-01-24
> BS09015.5prime
GAAGTTATCAGTCGACATGGCTACGGACACGGTGTCCAACGGCGAGAACT
TCGCCCAGCACTTGAGCAGAAACAGCGACGACGACGTGATCTGTCCCACA
TGCGACGTGAAGATCAAGCGCAGTCAGGTGGCCGATCACTGCCAAGTGGA
GATGGAGCGATTGCACAATCCCATTAGCGCTGTCACTCCACCGACCCCAA
CTAGCGGAGCAACCGCGTCCGAGGAATCCGGTTCGGTATCGGGGGGCAGA
CAACCGTGGAGCGTGTTCCAGCGGGTGCAGCGCAATCGGCAGGCCCGTCA
GCGCCAGCGCACCAGGAAGCGTCCGGCTTCTCCTGCCCCACCAGCAACTG
TAAATCCTACGGTAGCAGCTGCTCCTCCTCCAGCTGCAGCAACTCCGTCC
GTAGCTGCTGCCGAATCGAGCCAACCCACCTGTCCCGTGTGCAACCACAA
CTTTCCGCAGTCCAACATCCAAGAGCATGTTAATCATTGCCTGCGCCAGA
GCCGCCGCAATGGTCAGGCCAATGGTGAGCGGCATTCGAGTGAGGACTCG
GAGGACAGCGAGGAATATGAAGAGTACGAGTGGGCGGGACAGAAGCGCAT
TCGCGTCTCCACTCTCGTGCAAGGAGGCTATTCCGCCCTGGGCCTGGGCC
AGAGAATCAAATACAATGGCAGTCAGCAGGCGCAGGACGACGAGGACGAA
GATCTCAACGTGGACGAGGATGACACTCACATCTATGGTCCTACGCAGTA
TGGCGAGGGCGATGTGATCCCACTGGTCAACGAGGACACAGAGGGAAATG
TTTCCGAGGCGGATGTTACCAGCTACGTGCGCCGACTTATCTCCTCCAGC
GATGGGCCCAAGCCAAAACCATTCCAGCGAAGCCACCGAGCAAGAGCCTG
CCAGCACAAGC
BS09015.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4813-PA | 1197 | CG4813-RA | 1..851 | 17..867 | 4255 | 100 | Plus |
| CG4813-PA | 1197 | CG4813-RA | 849..894 | 866..911 | 230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:40:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4813-RA | 1531 | CG4813-RA | 146..1039 | 17..911 | 4450 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:40:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22725376..22726269 | 911..17 | 4425 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-09 09:40:37 has no hits.
BS09015.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:56:38 Download gff for
BS09015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4813-PA | 1..894 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:01:57 Download gff for
BS09015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4813-PA | 1..894 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:22:07 Download gff for
BS09015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4813-RA | 111..1007 | 12..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:51:35 Download gff for
BS09015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4813-RA | 143..1039 | 12..911 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:51:35 Download gff for
BS09015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22725376..22726272 | 12..911 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:22:07 Download gff for
BS09015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18551098..18551994 | 12..911 | 99 | | Minus |
BS09015.complete Sequence
1229 bp (1229 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636335
> BS09015.complete
GAAGTTATCAGTCGACATGGCTACGGACACGGTGTCCAACGGCGAGAACT
TCGCCCAGCACTTGAGCAGAAACAGCGACGACGACGTGATCTGTCCCACA
TGCGACGTGAAGATCAAGCGCAGTCAGGTGGCCGATCACTGCCAAGTGGA
GATGGAGCGATTGCACAATCCCATTAGCGCTGTCACTCCACCGACCCCAA
CTAGCGGAGCAACCGCGTCCGAGGAATCCGGTTCGGTATCGGGGGGCAGA
CAACCGTGGAGCGTGTTCCAGCGGGTGCAGCGCAATCGGCAGGCCCGTCA
GCGCCAGCGCACCAGGAAGCGTCCGGCTTCTCCTGCCCCACCAGCAACTG
TAAATCCTACGGTAGCAGCTGCTCCTCCTCCAGCTGCAGCAACTCCGTCC
GTAGCTGCTGCCGAATCGAGCCAACCCACCTGTCCCGTGTGCAACCACAA
CTTTCCGCAGTCCAACATCCAAGAGCATGTTAATCATTGCCTGCGCCAGA
GCCGCCGCAATGGTCAGGCCAATGGTGAGCGGCATTCGAGTGAGGACTCG
GAGGACAGCGAGGAATATGAAGAGTACGAGTGGGCGGGACAGAAGCGCAT
TCGCGTCTCCACTCTCGTGCAAGGAGGCTATTCCGCCCTGGGCCTGGGCC
AGAGAATCAAATACAATGGCAGTCAGCAGGCGCAGGACGACGAGGACGAA
GATCTCAACGTGGACGAGGATGACACTCACATCTATGGTCCTACGCAGTA
TGGCGAGGGCGATGTGATCCCACTGGTCAACGAGGACACAGAGGGAAATG
TTTCCGAGGCGGATGTTACCAGCTACGTGCGCCGACTTATCTCCTCCAGC
GATGGGCCCAAGCCAAACCATTCCAGCGAAGCCACCGAGCAAGAGCCTGC
CAGCACAAGCAACGTGGAGGCTCCACCAGCCAGCGAGGAGCCGTCTACGT
CGCGGTCCACGCGATCCACCTCCCAAAACCAGCAGCAGATCATCGAATCG
CTGAAGGCCAAGCTGCGGCTCTACGAAAAGCAGGCGCAGGGCAAGTACAA
GTGCCTGATCTGCATCGACGACTACAAGAATCCCGCCATCTCCGTGTCCT
GCTGGCACGTCCACTGCGAGCAGTGTTGGTTGCAGACGCTCGGCGCGCGA
AAGCTGTGCCCGCAGTGCAACTCGATTACCACGCCGAAGGACCTGCGACG
AATCTACCTGTAGAAGCTTTCTAGACCAT
BS09015.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:24:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4813-RA | 1197 | CG4813-PA | 1..1197 | 17..1213 | 5985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:24:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4813-RA | 1531 | CG4813-RA | 146..1343 | 17..1214 | 5990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:24:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22725072..22726269 | 1214..17 | 5990 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:24:53 has no hits.
BS09015.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:24 Download gff for
BS09015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4813-RA | 1..1197 | 17..1213 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:09 Download gff for
BS09015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4813-RA | 629..1829 | 12..1214 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:14:31 Download gff for
BS09015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4813-RA | 114..1310 | 17..1213 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:24 Download gff for
BS09015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4813-RA | 629..1829 | 12..1214 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:07 Download gff for
BS09015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4813-RA | 146..1342 | 17..1213 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:07 Download gff for
BS09015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22725073..22726269 | 17..1213 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:14:31 Download gff for
BS09015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18550795..18551991 | 17..1213 | 100 | | Minus |
BS09015.pep Sequence
Translation from 16 to 1212
> BS09015.pep
MATDTVSNGENFAQHLSRNSDDDVICPTCDVKIKRSQVADHCQVEMERLH
NPISAVTPPTPTSGATASEESGSVSGGRQPWSVFQRVQRNRQARQRQRTR
KRPASPAPPATVNPTVAAAPPPAAATPSVAAAESSQPTCPVCNHNFPQSN
IQEHVNHCLRQSRRNGQANGERHSSEDSEDSEEYEEYEWAGQKRIRVSTL
VQGGYSALGLGQRIKYNGSQQAQDDEDEDLNVDEDDTHIYGPTQYGEGDV
IPLVNEDTEGNVSEADVTSYVRRLISSSDGPKPNHSSEATEQEPASTSNV
EAPPASEEPSTSRSTRSTSQNQQQIIESLKAKLRLYEKQAQGKYKCLICI
DDYKNPAISVSCWHVHCEQCWLQTLGARKLCPQCNSITTPKDLRRIYL*
BS09015.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:43:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4813-PA | 398 | CG4813-PA | 1..398 | 1..398 | 2111 | 100 | Plus |
