Clone Sequence Records
BS09016.complete Sequence
2102 bp assembled on 2009-12-07
GenBank Submission: KX802144
> BS09016.complete
GAAGTTATCAGTCGACATGAATCGTCGCTTTTCGAGAGTGGAGTCCGGGG
CGGACCTTAAGGATTATTTCGATCGGGGTGATATCGCTTCCCGGGAGAAC
CGCTGGAACTTCGAGGTGGCATGGGAGGTGGCCAACAAGGTGGGCGGTAT
TTACACGGTGATCCGGTCGAAGGCATATGTCTCCACCGAGGAGATGGGCG
AGCAGTTGTGTATGATGGGTCCCTACAAGGAGCACTGTGCCCGCACCGAG
ATGGAGGAGATGGAGTTCCCCAGGGGAAACCCCCTACTAGACGCTGTCAA
CTCATTGCGCTCGCGAGGCTATAAAATCCACACCGGTCGCTGGCTGGTGG
ACGGAAATCCTCAATTAATCCTGTTCGATATTGGATCAGCCGCTTGGAAG
CTGGATCAGTTCAAATCGGAGATGTGGGAGAAGTGCCATATTGGAATACC
TCATTTGGATATCGAGACGAACGATGCCATTATCCTTGGCTTTATGATTG
CCGAGTTCCTGGAGGAGTTCCGCAACTTTGCCGTGACTTATTCGCAGAAC
AACGAATTGAGCGCTCCGAGGATTGTCGCCCACTTCCACGAATGGCAAGC
TGGCGTGGGTCTCATTGTCCTACGTACTCGTCTGGTGGAGATCGCCACTG
TGTTCACTACCCACGCCACATTGTTGGGTCGTTACTTGTGCGCCGGCAAC
ACCGATTTCTACAACAATCTGGACAAGTTCGCCGTGGACGAAGAGGCGGG
CAAGCGCCAAATCTATCATCGTTATTGCCTGGAGCGAGGTGCCACCCACT
TGGCTCATGTGTTCACCACCGTCTCCGAGATTACGGGCTACGAGGCAGAG
CATCTGCTCAAGCGCAAACCGGACATCATCACGCCCAATGGACTGAACGT
GAAGAAGTTCTCGGCCATCCACGAGTTCCAGAACTTGCACGCCGTTGCCA
AGGAGAAGATCAACGAATTCGTGCGGGGTCACTTTTACGGCCACATTGAC
TTTGATTTAGATAAGACCCTGTACTTCTTCATCGCCGGTCGCTACGAGTT
TGGAAACAAGGGAGCCGACATCTTCATCGAGGCACTGGCTCGCTTGAACG
CGATGCTCAAGCACGAGAAGCCGGACACCACGGTGGTGGCCTTTCTCATC
TTCCCCACCAAGACCAACAACTTCAACGTGGACTCGCTGCGAGGACATGC
CGTGATCAAGCAGTTGCGCGATACGATCAACAACGTCCAGCAGGCCGTGG
GCAAGCGGATGTTCGACACTTGTCTGCAGGGCAACATACCCAATGCCGAT
GATCTGCTTCAGAAGGATGACCTCGTCAAGATCAAGCGTTGCATGTTCGC
CATGCAGCGCGATTCGATGCCGCCTGTTACCACGCACAATGTGGCTGATG
ACTGGAATGATCCGGTGCTATCCTCAATCCGTCGTTGCCATCTGTTCAAC
TCGCGCCACGATCGTGTCAAGATGGTCTTCCATCCGGAGTTCCTCACATC
CACAAATCCTCTGTTTGGAATCGACTACGAAGAATTTGTCCGTGGCTGCC
ACTTGGGTGTCTTCCCCTCATACTACGAGCCCTGGGGTTACACTCCCGCC
GAGTGTACGGTGATGGGTATCCCCAGCGTAACCACCAATCTGTCCGGCTT
TGGCTGCTTCATGGAGGAGCACATCAGTGATCCCAAGTCATACGGTATCT
ACATCGTGGATCGCCGCTATATCGGCTTGGAGAACAGCGTTCAGCAGCTG
TCCAGCTTTATGATGGAGTTCTCCAGGCTGAACCGCCGCCAGCGCATTAT
CCAGCGTAATCGCACGGAGCGGTTGAGCGATCTTCTGGACTGGCGCACCC
TGGGCATTTACTACAGACAGGCCAGGGTTAAGGCCCTGCAAGCTGTTTAC
CCAGACTATGTGGATGAATTGTCTCTCTATGGATCGAAGAACAACTTGAT
CTTCTCGCGACCGCACAGCGAACCTCCCAGTCCTACTTCATCGCGGCACA
CCACTCCAGCTCCATCGGTTCACGGTTCGGATGACGAGGACTCCGTGGAT
GAGGAGACCGAACTCAAGGAATTGGGGATTAAGTAGAAGCTTTCTAGACC
AT
BS09016.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:03:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GlyS-RD | 2070 | CG6904-PD | 1..2070 | 17..2086 | 10350 | 100 | Plus |
| GlyS-RA | 2130 | CG6904-PA | 61..2130 | 17..2086 | 10350 | 100 | Plus |
| GlyS-RB | 2070 | CG6904-PB | 1..2070 | 17..2086 | 10350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:03:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GlyS-RD | 2473 | CG6904-RD | 44..2114 | 17..2087 | 10355 | 100 | Plus |
| GlyS-RA | 2584 | CG6904-RA | 155..2225 | 17..2087 | 10355 | 100 | Plus |
| GlyS-RB | 3129 | CG6904-RB | 700..2770 | 17..2087 | 10355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:03:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15144266..15145239 | 990..17 | 4870 | 100 | Minus |
| 3R | 32079331 | 3R | 15142959..15143831 | 1858..986 | 4350 | 99.9 | Minus |
| 3R | 32079331 | 3R | 15142728..15142864 | 1995..1859 | 685 | 100 | Minus |
| 3R | 32079331 | 3R | 15142202..15142294 | 2087..1995 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:03:54 has no hits.
BS09016.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:08 Download gff for
BS09016.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6904-RA | 256..2325 | 17..2086 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:04:55 Download gff for
BS09016.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GlyS-RB | 700..2769 | 17..2086 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:07:27 Download gff for
BS09016.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6904-RA | 256..2325 | 17..2086 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:12 Download gff for
BS09016.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GlyS-RB | 700..2769 | 17..2086 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:12 Download gff for
BS09016.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15142203..15142294 | 1995..2086 | 100 | <- | Minus |
| 3R | 15142729..15142864 | 1859..1994 | 100 | <- | Minus |
| 3R | 15142959..15143826 | 991..1858 | 100 | <- | Minus |
| 3R | 15144266..15145239 | 17..990 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:04:55 Download gff for
BS09016.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10967925..10968016 | 1995..2086 | 100 | <- | Minus |
| arm_3R | 10968451..10968586 | 1859..1994 | 100 | <- | Minus |
| arm_3R | 10968681..10969548 | 991..1858 | 100 | <- | Minus |
| arm_3R | 10969988..10970961 | 17..990 | 100 | | Minus |
BS09016.3prime Sequence
911 bp (791 high quality bases) assembled on 2006-01-24
> BS09016.3prime
ATGGTCTAGAAAGCTTCTACTTAATCCCCAATTCCTTGAGTTCGGTCTCC
TCATCCACGGAGTCCTCGTCATCCGAACCGTGAACCGATGGAGCTGGAGT
GGTGTGCCGCGATGAAGTAGGACTGGGAGGTTCGCTGTGCGGTCGCGAGA
AGATCAAGTTGTTCTTCGATCCATAGAGAGACAATTCATCCACATAGTCT
GGGTAAACAGCTTGCAGGGCCTTAACCCTGGCCTGTCTGTAGTAAATGCC
CAGGGTGCGCCAGTCCAGAAGATCGCTCAACCGCTCCGTGCGATTACGCT
GGATAATGCGCTGGCGGCGGTTCAGCCTGGAGAACTCCATCATAAAGCTG
GACAGCTGCTGAACGCTGTTCTCCAAGCCGATATAGCGGCGATCCACGAT
GTAGATACCGTATGACTTGGGATCACTGATGTGCTCCTCCATGAAGCAGC
CAAAGCCGGACAGATTGGTGGTTACGCTGGGGATACCCATCACCGTACAC
TCGGCGGGAGTGTAACCCCAGGGCTCGTAGTATGAGGGGAAGACACCCAA
GTGGCAGCCACGGACAAATTCTTCGTAGTCGATTCCAAACAGAGGATTTG
TGGATGTGAGGAACTCCGGATGGAAGACCATCTTGACACGATCGTGGCGC
GAGTTGAACAGATGGCAACGACGGATTGAGGATAGCACCGGATCATTCCA
GTCATCAGCCACATTGTGCGTGGTAACAGGCGGCATCGAATCGCGCTGCA
TGGCGAACATGCAACGCTTGATCTTGACGAGGTCATCCTTCTGAAGCAGA
TCATCGGCATTGGGTATGTTGCCCTGCAGACAAGTGTCGAACATCCGCTT
GCCCACGGCCTGCTGGACGTTGTTGATCGTATCGCGCAACTGCTTGATCA
CGGCATGTCCT
BS09016.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6904-PC | 2070 | CG6904-RC | 1176..2070 | 911..17 | 4475 | 100 | Minus |
| CG6904-PB | 2070 | CG6904-RB | 1176..2070 | 911..17 | 4475 | 100 | Minus |
| CG6904-PA | 2130 | CG6904-RA | 1236..2130 | 911..17 | 4475 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:20:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GlyS-RD | 2473 | CG6904-RD | 1219..2114 | 911..16 | 4480 | 100 | Minus |
| GlyS-RA | 2584 | CG6904-RA | 1330..2225 | 911..16 | 4480 | 100 | Minus |
| GlyS-RB | 3129 | CG6904-RB | 1875..2770 | 911..16 | 4480 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:19:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15142959..15143625 | 245..911 | 3335 | 100 | Plus |
| 3R | 32079331 | 3R | 15142728..15142864 | 108..244 | 685 | 100 | Plus |
| 3R | 32079331 | 3R | 15142202..15142294 | 16..108 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:20:01 has no hits.
BS09016.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:56:39 Download gff for
BS09016.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6904-PB | 1176..2070 | 17..911 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:01:58 Download gff for
BS09016.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6904-PA | 1236..2130 | 17..911 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:56:00 Download gff for
BS09016.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GlyS-RB | 1875..2781 | 2..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:30 Download gff for
BS09016.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GlyS-RB | 1875..2781 | 2..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:30 Download gff for
BS09016.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15142191..15142294 | 2..108 | 95 | <- | Plus |
| 3R | 15142729..15142864 | 109..244 | 100 | <- | Plus |
| 3R | 15142959..15143625 | 245..911 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:56:00 Download gff for
BS09016.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10967913..10968016 | 2..108 | 95 | <- | Plus |
| arm_3R | 10968451..10968586 | 109..244 | 100 | <- | Plus |
| arm_3R | 10968681..10969347 | 245..911 | 100 | | Plus |
BS09016.5prime Sequence
923 bp (785 high quality bases) assembled on 2006-01-24
> BS09016.5prime
GAAGTTATCAGTCGACATGAATCGTCGCTTTTCGAGAGTGGAGTCCGGGG
CGGACCTTAAGGATTATTTCGATCGGGGTGATATCGCTTCCCGGGAGAAC
CGCTGGAACTTCGAGGTGGCATGGGAGGTGGCCAACAAGGTGGGCGGTAT
TTACACGGTGATCCGGTCGAAGGCATATGTCTCCACCGAGGAGATGGGCG
AGCAGTTGTGTATGATGGGTCCCTACAAGGAGCACTGTGCCCGCACCGAG
ATGGAGGAGATGGAGTTCCCCAGGGGAAACCCCCTACTAGACGCTGTCAA
CTCATTGCGCTCGCGAGGCTATAAAATCCACACCGGTCGCTGGCTGGTGG
ACGGAAATCCTCAATTAATCCTGTTCGATATTGGATCAGCCGCTTGGAAG
CTGGATCAGTTCAAATCGGAGATGTGGGAGAAGTGCCATATTGGAATACC
TCATTTGGATATCGAGACGAACGATGCCATTATCCTTGGCTTTATGATTG
CCGAGTTCCTGGAGGAGTTCCGCAACTTTGCCGTGACTTATTCGCAGAAC
AACGAATTGAGCGCTCCGAGGATTGTCGCCCACTTCCACGAATGGCAAGC
TGGCGTGGGTCTCATTGTCCTACGTACTCGTCTGGTGGAGATCGCCACTG
TGTTCACTACCCACGCCACATTGTTGGGTCGTTACTTGTGCGCCGGCAAC
ACCGATTTCTACAACAATCTGGACAAGTTCGCCGTGGACGAAGAGGCGGG
CAAGCGCCAAATCTATCATCGTTATTGCCTGGAGCGAGGTGCCACCCACT
TGGCTCATGTGTTCACCACCGTCTCCGAGATTACNGGCTACGAGGCAGAG
CATCTGCTCAGGCGCAAACCGGACATCATCACGCCCAAGGGACTGAACGT
GAAGAAGTTCTCGGGCATCCACG
BS09016.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6904-PC | 2070 | CG6904-RC | 1..907 | 17..923 | 4441 | 99.5 | Plus |
| CG6904-PB | 2070 | CG6904-RB | 1..907 | 17..923 | 4441 | 99.5 | Plus |
| CG6904-PA | 2130 | CG6904-RA | 61..967 | 17..923 | 4441 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:04:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GlyS-RD | 2473 | CG6904-RD | 44..950 | 17..923 | 4479 | 99.6 | Plus |
| GlyS-RA | 2584 | CG6904-RA | 155..1061 | 17..923 | 4479 | 99.6 | Plus |
| GlyS-RB | 3129 | CG6904-RB | 700..1606 | 17..923 | 4479 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:04:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15144333..15145239 | 923..17 | 4479 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:04:43 has no hits.
BS09016.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:56:40 Download gff for
BS09016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6904-PB | 1..907 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:02:00 Download gff for
BS09016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6904-PA | 61..967 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:46:19 Download gff for
BS09016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GlyS-RB | 694..1606 | 12..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:54:52 Download gff for
BS09016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GlyS-RB | 694..1606 | 12..923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:54:52 Download gff for
BS09016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15144333..15145248 | 8..923 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:46:19 Download gff for
BS09016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10970055..10970970 | 8..923 | 99 | | Minus |
BS09016.pep Sequence
Translation from 16 to 2085
> BS09016.pep
MNRRFSRVESGADLKDYFDRGDIASRENRWNFEVAWEVANKVGGIYTVIR
SKAYVSTEEMGEQLCMMGPYKEHCARTEMEEMEFPRGNPLLDAVNSLRSR
GYKIHTGRWLVDGNPQLILFDIGSAAWKLDQFKSEMWEKCHIGIPHLDIE
TNDAIILGFMIAEFLEEFRNFAVTYSQNNELSAPRIVAHFHEWQAGVGLI
VLRTRLVEIATVFTTHATLLGRYLCAGNTDFYNNLDKFAVDEEAGKRQIY
HRYCLERGATHLAHVFTTVSEITGYEAEHLLKRKPDIITPNGLNVKKFSA
IHEFQNLHAVAKEKINEFVRGHFYGHIDFDLDKTLYFFIAGRYEFGNKGA
DIFIEALARLNAMLKHEKPDTTVVAFLIFPTKTNNFNVDSLRGHAVIKQL
RDTINNVQQAVGKRMFDTCLQGNIPNADDLLQKDDLVKIKRCMFAMQRDS
MPPVTTHNVADDWNDPVLSSIRRCHLFNSRHDRVKMVFHPEFLTSTNPLF
GIDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNLSGFGCFME
EHISDPKSYGIYIVDRRYIGLENSVQQLSSFMMEFSRLNRRQRIIQRNRT
ERLSDLLDWRTLGIYYRQARVKALQAVYPDYVDELSLYGSKNNLIFSRPH
SEPPSPTSSRHTTPAPSVHGSDDEDSVDEETELKELGIK*
BS09016.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:23:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GlyS-PD | 689 | CG6904-PD | 1..689 | 1..689 | 3667 | 100 | Plus |
| GlyS-PA | 709 | CG6904-PA | 21..709 | 1..689 | 3667 | 100 | Plus |
| GlyS-PB | 689 | CG6904-PB | 1..689 | 1..689 | 3667 | 100 | Plus |
| GlyS-PC | 689 | CG6904-PC | 1..689 | 1..689 | 3667 | 100 | Plus |
