Clone Sequence Records
BS09018.3prime Sequence
937 bp (899 high quality bases) assembled on 2006-01-24
> BS09018.3prime
ATGGTCTAGAAAGCTTTTACCGCTGATTGATACCCTGGAAACCGTACTCC
TCGTAGTCGTCTTGCGTGTAAACAAACTCTTCAAAGTTGGGGCTGGTCGC
AACCTCCTTGCCGCCGTACCACGCGTACCGCACCGGATCCTCGGGACAGA
TGAGTGACACTTCAAGATCGTCGGGCACCAGGGCACGTAAATCGCGCTTT
AGGCGCGGCAGAAATCCCGGAAACTGGGCACTGCCGCCCACAATAAGGAT
GTTGAGCAGGAGTTCGCGGTGCGCTTCCCAGGGGCAAGCCTTCAGACAAT
CGGCCACCGCTTCCGGAATGCCCACCTGTTGCACACCAATGTCCGAGGGA
TTGAAGAGCAGCTCGGGCACGGTGAAACGTTCATTGCACAGCGACACCAT
TTGCTGTTGCTCCTCATCCTCGCGCGGCTTTCCGGGAACACGAACATAGC
CCCGTTTGACGGTGGTGAAGTCTGGAAGGACATAATCAACTGTGACTTCG
CGTCGCTTCTCCTCCGAATAATGCACCTGCATCGCCTGCTTGAAGTCCTC
CGCCACAAAGCAGACATCTTCCTTGATCTGGTTAACTACATGACTCTCGT
CCATGACGTTTAGGTGGCGATAAGAGATTAGCTCCTTTAGCTGGTTGGTC
AGCGCCTTCCCGCCCATGTCGATGCGTCGTATGCCTTGGAGAACGCGCCG
TCCCAGCACAAAAGGAACAACGTGGGTGAAACTGTAGCCTACATCGATGA
TGATGCAGTTAAGCGATTCCATTGTAGTCCGCTCCTCGCTGTCAGCCACA
TAGTTAAAGGCAGCCAGATCGGCAGCAGTGGTCTTGTACACCCCATCAAC
CTTGTACTCCTCAAACAGAATCTCCAGCGTTGCCTCCTGGATGCTCTGGA
AAGTCATCTGCGGCTCAGTGATGACCATATTGCCGGT
BS09018.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11678-PA | 1197 | Actr13E-RA | 281..1197 | 933..17 | 4510 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:35:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp6-RA | 1347 | CG11678-RA | 368..1284 | 933..17 | 4540 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:35:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15735837..15736753 | 17..933 | 4540 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-03 08:35:12 has no hits.
BS09018.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:56:43 Download gff for
BS09018.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11678-PA | 278..1197 | 17..937 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:02:04 Download gff for
BS09018.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11678-PA | 278..1197 | 17..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:40:03 Download gff for
BS09018.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp6-RA | 365..1284 | 17..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:54:26 Download gff for
BS09018.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp6-RA | 365..1284 | 17..937 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:54:26 Download gff for
BS09018.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15735837..15736756 | 17..937 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:40:03 Download gff for
BS09018.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15629870..15630789 | 17..937 | 99 | | Plus |
BS09018.5prime Sequence
875 bp (795 high quality bases) assembled on 2006-01-24
> BS09018.5prime
GAAGTTATCAGTCGACATGGCCAACGCTGTGGTGGTGTTGGACAACGGAG
CGCATACGGCGAAAGTGGGCCTGGCCAATCAGGATGAGCCCCATGTGGTG
CCCAACTGCATCATGAAAGCAAAGAGCGAGCGGCGACGCGCTTTTGTGGG
AAATCAGATAGATGAATGCCGGGACACATCGGCGCTCTATTACATTCTGG
CGTTCCAGCGCGGCTACCTGCTCAACTGGCACACACAGAAAACGGTGTGG
GATTACATATTCAGCAAGGACGGCATTGGTTGTTCGCTGGAGAACCGCAA
TATTGTCATCACTGAGCCGCAGATGAACTTCCAGAGCATCCAGGAGGCAA
CGCTGGAGATTCTGTTTGAGGAGTACAAGGTTGATGGGGTGTACAAGACC
ACTGCTGCCGATCTGGCTGCCTTTAACTATGTGGCTGACAGCGAGGAGCG
GACTACAATGGAATCGCTTAACTGCATCATCATCGATGTAGGCTACAGTT
TCACCCACGTTGTTCCTTTTGTGCTGGGACGGCGCGTTCTCCAAGGCATA
CGACGCATCGACATGGGCGGGAAGGCGCTGACCAACCAGCTAAAGGAGCT
AATCTCTTATCGCCACCTAAACGTCATGGACGAGAGTCATGTAGTTAACC
AGATCAAGGAAGATGTCTGCTTTGTGGCGGAGGACTTCAAGCAGGCGATG
CAGGTGCATTATTCGGAGGAGAAGCGACGCGAAGTCACAGTTGATTATGT
CCTTCCAGACTTCACCACCGTCAAACGGGGCTATGTTCGTGTTCCCGGAA
AGCCGCGCGAGGATGAGGAGCAACAGCAAATGGTGTCGCTGTGCAATGAA
CGTTTTCACGTGCCCGAGCTGCTCT
BS09018.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11678-PA | 1197 | Actr13E-RA | 1..839 | 17..855 | 4195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:53:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp6-RA | 1347 | CG11678-RA | 88..946 | 17..875 | 4250 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:53:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15736175..15737033 | 875..17 | 4250 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:53:08 has no hits.
BS09018.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:56:44 Download gff for
BS09018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11678-PA | 1..859 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:02:05 Download gff for
BS09018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11678-PA | 1..859 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:22:11 Download gff for
BS09018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp6-RA | 85..946 | 10..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:01:36 Download gff for
BS09018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp6-RA | 85..946 | 10..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:01:36 Download gff for
BS09018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15736175..15737036 | 10..875 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:22:11 Download gff for
BS09018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15630208..15631069 | 10..875 | 99 | | Minus |
BS09018.complete Sequence
1229 bp (1229 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636336
> BS09018.complete
GAAGTTATCAGTCGACATGGCCAACGCTGTGGTGGTGTTGGACAACGGAG
CGCATACGGCGAAAGTGGGCCTGGCCAATCAGGATGAGCCCCATGTGGTG
CCCAACTGCATCATGAAAGCAAAGAGCGAGCGGCGACGCGCTTTTGTGGG
AAATCAGATAGATGAATGCCGGGACACATCGGCGCTCTATTACATTCTGG
CGTTCCAGCGCGGCTACCTGCTCAACTGGCACACACAGAAAACGGTGTGG
GATTACATATTCAGCAAGGACGGCATTGGTTGTTCGCTGGAGAACCGCAA
TATTGTCATCACTGAGCCGCAGATGAACTTCCAGAGCATCCAGGAGGCAA
CGCTGGAGATTCTGTTTGAGGAGTACAAGGTTGATGGGGTGTACAAGACC
ACTGCTGCCGATCTGGCTGCCTTTAACTATGTGGCTGACAGCGAGGAGCG
GACTACAATGGAATCGCTTAACTGCATCATCATCGATGTAGGCTACAGTT
TCACCCACGTTGTTCCTTTTGTGCTGGGACGGCGCGTTCTCCAAGGCATA
CGACGCATCGACATGGGCGGGAAGGCGCTGACCAACCAGCTAAAGGAGCT
AATCTCTTATCGCCACCTAAACGTCATGGACGAGAGTCATGTAGTTAACC
AGATCAAGGAAGATGTCTGCTTTGTGGCGGAGGACTTCAAGCAGGCGATG
CAGGTGCATTATTCGGAGGAGAAGCGACGCGAAGTCACAGTTGATTATGT
CCTTCCAGACTTCACCACCGTCAAACGGGGCTATGTTCGTGTTCCCGGAA
AGCCGCGCGAGGATGAGGAGCAACAGCAAATGGTGTCGCTGTGCAATGAA
CGTTTCACCGTGCCCGAGCTGCTCTTCAATCCCTCGGACATTGGTGTGCA
ACAGGTGGGCATTCCGGAAGCGGTGGCCGATTGTCTGAAGGCTTGCCCCT
GGGAAGCGCACCGCGAACTCCTGCTCAACATCCTTATTGTGGGCGGCAGT
GCCCAGTTTCCGGGATTTCTGCCGCGCCTAAAGCGCGATTTACGTGCCCT
GGTGCCCGACGATCTTGAAGTGTCACTCATCTGTCCCGAGGATCCGGTGC
GGTACGCGTGGTACGGCGGCAAGGAGGTTGCGACCAGCCCCAACTTTGAA
GAGTTTGTTTACACGCAAGACGACTACGAGGAGTACGGTTTCCAGGGTAT
CAATCAGCGGTAAAAGCTTTCTAGACCAT
BS09018.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:28:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp6-RA | 1197 | CG11678-PA | 1..1197 | 17..1213 | 5985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:28:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp6-RA | 1347 | CG11678-RA | 88..1284 | 17..1213 | 5985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:28:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15735837..15737033 | 1213..17 | 5985 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:28:56 has no hits.
BS09018.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:13 Download gff for
BS09018.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Actr13E-RA | 1..1197 | 17..1213 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:55 Download gff for
BS09018.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Actr13E-RA | 41..1240 | 10..1213 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:16:10 Download gff for
BS09018.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp6-RA | 88..1282 | 17..1211 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:13 Download gff for
BS09018.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Actr13E-RA | 41..1240 | 10..1213 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:31 Download gff for
BS09018.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp6-RA | 88..1282 | 17..1211 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:31 Download gff for
BS09018.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15735839..15737033 | 17..1211 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:16:10 Download gff for
BS09018.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15629872..15631066 | 17..1211 | 100 | | Minus |
BS09018.pep Sequence
Translation from 16 to 1212
> BS09018.pep
MANAVVVLDNGAHTAKVGLANQDEPHVVPNCIMKAKSERRRAFVGNQIDE
CRDTSALYYILAFQRGYLLNWHTQKTVWDYIFSKDGIGCSLENRNIVITE
PQMNFQSIQEATLEILFEEYKVDGVYKTTAADLAAFNYVADSEERTTMES
LNCIIIDVGYSFTHVVPFVLGRRVLQGIRRIDMGGKALTNQLKELISYRH
LNVMDESHVVNQIKEDVCFVAEDFKQAMQVHYSEEKRREVTVDYVLPDFT
TVKRGYVRVPGKPREDEEQQQMVSLCNERFTVPELLFNPSDIGVQQVGIP
EAVADCLKACPWEAHRELLLNILIVGGSAQFPGFLPRLKRDLRALVPDDL
EVSLICPEDPVRYAWYGGKEVATSPNFEEFVYTQDDYEEYGFQGINQR*
BS09018.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:40:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp6-PA | 398 | CG11678-PA | 1..398 | 1..398 | 2091 | 100 | Plus |
| Act87E-PC | 376 | CG18290-PC | 7..367 | 4..391 | 421 | 26.4 | Plus |
| Act87E-PB | 376 | CG18290-PB | 7..367 | 4..391 | 421 | 26.4 | Plus |
| Act87E-PA | 376 | CG18290-PA | 7..367 | 4..391 | 421 | 26.4 | Plus |
| Act57B-PA | 376 | CG10067-PA | 7..367 | 4..391 | 418 | 26.1 | Plus |
