Clone Sequence Records
BS09019.3prime Sequence
940 bp (839 high quality bases) assembled on 2006-01-24
> BS09019.3prime
ATGGTCTAGAAAGCTTTTAGATGTTTATCACGCGGCTCAACTTCTGGATG
CGGTTGAGCAGCAGATCGCCCTGCTTGATGGTCGCCTGGTACTGCCAGTT
CTTGTTGTCAGGCCGATTGGTCTCCACAATGCCGCCAACGCGATCCACCT
TGGCATGCAGCCGTCCGGCGGCGATGAAGCGTGCCAGCTCCTGGTCAATG
TATTCCACTGTTACGCCGAACGACTCGGCCATATACTGCAGGGTGAGGGA
GCGATACGACTCCAGCAACTGGGTGTAGCCCAGAATGCGCATCTCGCGCA
CGTAGTAGCGGTAGTGGGGATGAATGAGGTAGTCCAAGCGCAATTGCTTC
TCTACGCCGGCCAGGTGTACGTAGAAGTTCTCATATTGGCAGTTGTACAA
GGAAAACAGGAACTGTTTCACGTCGGGCAGGCCATGGAGCACCTCCTGGA
TTTCGGAGCCCTTGATCACTTTGTCGCGCAGCTCATTGCGCGGCAGGGCA
ATCATGGCCACGTAAACGGTGTAACGCACGAAGGTGGGGTAGTCCATCAG
TTCGTATGAGGTGAAGGTGCTTACGGTGTCCAGGAAGAACGTGGCCGCCG
CCTTGAAGTCACGCACCGCCACCGAGTAAACACCCTGGTAGACCTTCAAC
CGGTTGCGTCGGTCCCAATCGCCGCCTTCCTCGATCAGATACTTGGCCTT
GTCGATGTTGCGAGTGATGAGATCGTGGTCAAGGTAAAACAGTCCCAAGC
GGATCAGATGGAACACGATGTCCAGGCGGTGACCCAGGGAAACGGTCTTC
TCGTANGTCTTGCGGAAGGCAGTCTCTGCGGCAGCCTTGTCGCCGATGCG
GCACAAGTACTCTGACTTCTTAAGATTCGCTCGCGCACTTCCATCTCGCC
CAGATTCTTCTCCGCATCCTCGATTGCCGCATCTAGCTGC
BS09019.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5378-PA | 1170 | Rpn7-RA | 307..1170 | 880..17 | 4301 | 99.8 | Minus |
| CG5378-PA | 1170 | Rpn7-RA | 246..306 | 940..880 | 305 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:39:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn7-RA | 1393 | CG5378-RA | 378..1302 | 940..17 | 4589 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:39:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22460753..22461677 | 17..940 | 4564 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-03 08:39:51 has no hits.
BS09019.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:56:45 Download gff for
BS09019.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn7-PA | 246..1170 | 17..940 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:02:07 Download gff for
BS09019.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5378-PA | 246..1170 | 17..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:40:35 Download gff for
BS09019.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn7-RA | 378..1302 | 17..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:54:58 Download gff for
BS09019.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn7-RA | 378..1302 | 17..940 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:54:58 Download gff for
BS09019.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22460753..22461677 | 17..940 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:40:35 Download gff for
BS09019.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18286475..18287399 | 17..940 | 99 | | Plus |
BS09019.5prime Sequence
940 bp (804 high quality bases) assembled on 2006-01-24
> BS09019.5prime
GAAGTTATCAGTCGACATGCCTGCCGAAAACTTGGAGGAGCAGGGTCTGG
AGAAGAACCCGAACCTGGAGCTGGCCCAGACGAAGTTCCTGCTTACCCTG
GCGGAATACAAGCAGGATGCGGCATTGAAGGCGAAGCTTCTGGAGGCGAT
TCGCACGGAGAATATGGCCCCGTGGTACGAGCACATCTGCTCGGAACTCG
GCTGGACCGTAGACAAGGATCTGCTGGCGCGAATGAAGGAGAACAACCGC
GTAGAGGTGGAGCAGCTAGATGCGGCAATCGAGGATGCGGAGAAGAATCT
GGGCGAGATGGAAGTGCGCGAGGCGAATCTTAAGAAGTCAGAGTACTTGT
GCCGCATCGGCGACAAGGCTGCCGCAGAGACTGCCTTCCGCAAGACCTAC
GAGAAGACCGTTTCCCTGGGTCACCGCCTGGACATCGTGTTCCATCTGAT
CCGCTTGGGACTGTTTTACCTTGACCACGATCTCATCACTCGCAACATCG
ACAAGGCCAAGTATCTGATCGAGGAAGGCGGCGATTGGGACCGACGCAAC
CGGTTGAAGGTCTACCAGGGTGTTTACTCGGTGGCGGTGCGTGACTTCAA
GGCGGCGGCCACGTTCTTCCTGGACACCGTAAGCACCTTCACCTCATACG
AACTGATGGACTACCCCACCTTCGTGCGTTACACCGTTTACGTGGCCATG
ATTGCCCTGCCGCGCAATGAGCTGCGCGACAAAGTGATCAAGGGCTCCGA
AATCCAGGAGGTGCTCCATGGCCTGCCCGACGTGAAACAGTTCCTGTTTT
CCTTGTANCACTGCCCATATGAGAACTTCTACGTACACCTGGCCGGCGTA
GAGAAGCAATTGCGCTTGGACTACCTCATTCATCCCCACTACCGCTACTA
CGTGCGCGAGATGCGCATTCTGGGCTACACCAGTTGCTGG
BS09019.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5378-PA | 1170 | Rpn7-RA | 1..915 | 17..931 | 4506 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:37:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn7-RA | 1393 | CG5378-RA | 133..1057 | 17..940 | 4559 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:37:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22461008..22461922 | 931..17 | 4534 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-09 09:37:48 has no hits.
BS09019.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:56:46 Download gff for
BS09019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn7-PA | 1..925 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:02:08 Download gff for
BS09019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5378-PA | 1..925 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:21:35 Download gff for
BS09019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn7-RA | 133..1057 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:51:09 Download gff for
BS09019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn7-RA | 133..1057 | 17..940 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:51:09 Download gff for
BS09019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22460998..22461922 | 17..940 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:21:35 Download gff for
BS09019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18286720..18287644 | 17..940 | 99 | | Minus |
BS09019.complete Sequence
1202 bp (1202 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636337
> BS09019.complete
GAAGTTATCAGTCGACATGCCTGCCGAAAACTTGGAGGAGCAGGGTCTGG
AGAAGAACCCGAACCTGGAGCTGGCCCAGACGAAGTTCCTGCTTACCCTG
GCGGAATACAAGCAGGATGCGGCATTGAAGGCGAAGCTTCTGGAGGCGAT
TCGCACGGAGAATATGGCCCCGTGGTACGAGCACATCTGCTCGGAACTCG
GCTGGACCGTAGACAAGGATCTGCTGGCGCGAATGAAGGAGAACAACCGC
GTAGAGGTGGAGCAGCTAGATGCGGCAATCGAGGATGCGGAGAAGAATCT
GGGCGAGATGGAAGTGCGCGAGGCGAATCTTAAGAAGTCAGAGTACTTGT
GCCGCATCGGCGACAAGGCTGCCGCAGAGACTGCCTTCCGCAAGACCTAC
GAGAAGACCGTTTCCCTGGGTCACCGCCTGGACATCGTGTTCCATCTGAT
CCGCTTGGGACTGTTTTACCTTGACCACGATCTCATCACTCGCAACATCG
ACAAGGCCAAGTATCTGATCGAGGAAGGCGGCGATTGGGACCGACGCAAC
CGGTTGAAGGTCTACCAGGGTGTTTACTCGGTGGCGGTGCGTGACTTCAA
GGCGGCGGCCACGTTCTTCCTGGACACCGTAAGCACCTTCACCTCATACG
AACTGATGGACTACCCCACCTTCGTGCGTTACACCGTTTACGTGGCCATG
ATTGCCCTGCCGCGCAATGAGCTGCGCGACAAAGTGATCAAGGGCTCCGA
AATCCAGGAGGTGCTCCATGGCCTGCCCGACGTGAAACAGTTCCTGTTTT
CCTTGTACAACTGCCAATATGAGAACTTCTACGTACACCTGGCCGGCGTA
GAGAAGCAATTGCGCTTGGACTACCTCATTCATCCCCACTACCGCTACTA
CGTGCGCGAGATGCGCATTCTGGGCTACACCCAGTTGCTGGAGTCGTATC
GCTCCCTCACCCTGCAGTATATGGCCGAGTCGTTCGGCGTAACAGTGGAA
TACATTGACCAGGAGCTGGCACGCTTCATCGCCGCCGGACGGCTGCATGC
CAAGGTGGATCGCGTTGGCGGCATTGTGGAGACCAATCGGCCTGACAACA
AGAACTGGCAGTACCAGGCGACCATCAAGCAGGGCGATCTGCTGCTCAAC
CGCATCCAGAAGTTGAGCCGCGTGATAAACATCTAAAAGCTTTCTAGACC
AT
BS09019.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:05:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn7-RA | 1170 | CG5378-PA | 1..1170 | 17..1186 | 5850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn7-RA | 1393 | CG5378-RA | 133..1302 | 17..1186 | 5850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22460753..22461922 | 1186..17 | 5850 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:05:31 has no hits.
BS09019.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:14 Download gff for
BS09019.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn7-RA | 1..1170 | 17..1186 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:57 Download gff for
BS09019.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn7-RA | 129..1298 | 17..1186 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:37:08 Download gff for
BS09019.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn7-RA | 133..1300 | 17..1184 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:14 Download gff for
BS09019.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn7-RA | 129..1298 | 17..1186 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:48 Download gff for
BS09019.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn7-RA | 133..1300 | 17..1184 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:48 Download gff for
BS09019.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22460755..22461922 | 17..1184 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:37:08 Download gff for
BS09019.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18286477..18287644 | 17..1184 | 100 | | Minus |
BS09019.pep Sequence
Translation from 16 to 1185
> BS09019.pep
MPAENLEEQGLEKNPNLELAQTKFLLTLAEYKQDAALKAKLLEAIRTENM
APWYEHICSELGWTVDKDLLARMKENNRVEVEQLDAAIEDAEKNLGEMEV
REANLKKSEYLCRIGDKAAAETAFRKTYEKTVSLGHRLDIVFHLIRLGLF
YLDHDLITRNIDKAKYLIEEGGDWDRRNRLKVYQGVYSVAVRDFKAAATF
FLDTVSTFTSYELMDYPTFVRYTVYVAMIALPRNELRDKVIKGSEIQEVL
HGLPDVKQFLFSLYNCQYENFYVHLAGVEKQLRLDYLIHPHYRYYVREMR
ILGYTQLLESYRSLTLQYMAESFGVTVEYIDQELARFIAAGRLHAKVDRV
GGIVETNRPDNKNWQYQATIKQGDLLLNRIQKLSRVINI*
BS09019.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:45:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn7-PA | 389 | CG5378-PA | 1..389 | 1..389 | 2005 | 100 | Plus |
| CSN1b-PA | 525 | CG3889-PA | 172..472 | 79..373 | 187 | 20.6 | Plus |
