Clone BS09020 Report

Search the DGRC for BS09020

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:90
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG5044-RA
Protein status:BS09020.pep: full length peptide match
Sequenced Size:1190

Clone Sequence Records

BS09020.3prime Sequence

965 bp (830 high quality bases) assembled on 2006-01-24

> BS09020.3prime
ATGGTCTAGAAAGCTTTTACAGCTTGAGTTCCTCGGTGTCCGGTAGCTTG
CGGAAAAACCACTGCACATGTTCCTCAGTGACATCGGCCAGCTTGGTTGG
CTGCCACTGGGGCTTCTGATCCTTGTCGATGAGTAGGGCGCGCACTCCCT
CCTTGAAATCACTTCGCTCCAGATGACGCACGGCCAGACGATATTCCATA
ATAAGACACTGAGCCAGCGACAGCTGTGATCCGAGCTCCAACTGACGGAA
CGTAACCTTCATCGAGGTGGGAGACATCTTCGAGAGCGTCTCAAGCGTCT
TCTTGGCCCATTCACTGCCATCGTTCTGCAGATTCTCTAGAATCCCCTCC
ACCGAGTCCGCTGAAAAGTTCTTGTTGATCTGCTCCAGGACAGGCTGCAG
CGAGAAGGGCTTTTCTGGCGGGGAATGGTACTTCTGCAGCAGCTCAGGCA
CATCATCCGCATCCGGGCAGTTAAGGAGAGCCGTCTCCAGATCAGGGATC
TTGCTGCTCTCGCAGTAGTGCGTAGCAATGCCTGAGTAATAGACATCGGC
TCCGCGCAGTCGATATCCTGTGAGACCCAGATAGAGGCCCAGCTTTCCCT
GCAGTCGAGGCAGGAAGTATGATCCACCCACATCCGGGAAGAGGCCAATC
GCCGTCTCGGGCATGGCGAACAGTGTCCGATCGCTGGCCACCCGGTACTT
GCCATGCACACTCAGACCCACGCCACCGCCCATGGTAATACCGTCAATGA
TGGCGATGTAGGGAATCTTATAGTTTCCGATCAGGGCATTCGTGCTGTAC
TCCTCCCGGAAGAAGCTCTTCGACTCATCCGTAGGGCCAGCCTCGACCAG
AGCGCGCACATCTCCACCGGCGCAGAAGGCCTTGTCACCTGTGCCCTTGA
TGATCACCAGCGACTTGGACTTCTCGCACTTCTTCAGGTGCTTGTAGATC
TTGCGTACCATCTCC

BS09020.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5044-PA 1158 CG5044-RA 210..1158 965..17 4745 100 Minus
CG5044-PB 1161 CG5044-RB 213..1161 965..17 4745 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:32:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5044-RB 1702 CG5044-RB 302..1250 965..17 4745 100 Minus
CG5044-RA 1699 CG5044-RA 299..1247 965..17 4745 100 Minus
ldlCp-RA 3015 CG6177-RA 2685..2959 17..291 1375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15357599..15358274 965..290 3380 100 Minus
3R 32079331 3R 15358537..15358811 291..17 1375 100 Minus
Blast to na_te.dros performed on 2015-02-03 08:32:40 has no hits.

BS09020.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:56:48 Download gff for BS09020.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5044-PB 213..1161 17..965 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:02:10 Download gff for BS09020.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5044-PB 213..1161 17..965 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:39:43 Download gff for BS09020.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5044-RA 299..1247 17..965 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:54:11 Download gff for BS09020.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5044-RA 299..1247 17..965 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:54:11 Download gff for BS09020.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15357599..15358274 290..965 100 -> Minus
3R 15358539..15358811 17..289 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:39:43 Download gff for BS09020.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11183321..11183996 290..965 100 -> Minus
arm_3R 11184261..11184533 17..289 100   Minus

BS09020.5prime Sequence

885 bp (765 high quality bases) assembled on 2006-01-24

> BS09020.5prime
GAAGTTATCAGTCGACATGGGCCCTATTCAAAGGTTGGTGTACACATTTG
GTCATCGCACCTGTAGCCAATTGCCGATGATCGGCGGAGCAACGATATCC
CAAACAAAACCAACAACAATGGCTCTCTCCGTTCGCCAATCCTCCTCCTC
CGTGCTGGCCACGGAGTCCTCTAACAAGGGAATGATTATTCTGAACCGGC
CCAAGGCGCTTAACGCCATCAACTTGGAGATGGTACGCAAGATCTACAAG
CACCTGAAGAAGTGCGAGAAGTCCAAGTCGCTGGTGATCATCAAGGGCAC
AGGTGACAAGGCCTTCTGCGCCGGTGGAGATGTGCGCGCTCTGGTCGAGG
CTGGCCCTACGGATGAGTCGAAGAGCTTCTTCCGGGAGGAGTACAGCACG
AATGCCCTGATCGGAAACTATAAGATTCCCTACATCGCCATCATTGACGG
TATTACCATGGGCGGTGGCGTGGGTCTGAGTGTGCATGGCAAGTACCGGG
TGGCCAGCGATCGGACACTGTTCGCCATGCCCGAGACGGCGATTGGCCTC
TTCCCGGATGTGGGTGGATCATACTTCCTGCCTCGACTGCAGGGAAAGCT
GGGCCTCTATCTGGGTCTCACAGGATATCGACTGCGCGGAGCCGATGTCT
ATTACTCAGGCATTGCTACGCACTACTGCGAGAGCAGCAAGATCCCTGAT
CTGGAGACGGCTCTCCTTAACTGCCCGGATGCGGATGATGTGCCTGAGCT
GCTGCAGAAGTACCATTCCCCGCCAGAAAAGCCCTTCTCGCTGCAGCCTG
TCCTGGAGCAGATCAACAAGAACTTTTCAGCGGACTCGGTGGAGGGGATT
CTAGAGAATCTGCAGAACGATGGCAGTGAATGGGC

BS09020.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5044-PA 1158 CG5044-RA 1..869 17..885 4320 99.8 Plus
CG5044-PB 1161 CG5044-RB 6..872 19..885 4310 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:03:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5044-RA 1699 CG5044-RA 90..958 17..885 4330 99.9 Plus
CG5044-RB 1702 CG5044-RB 95..961 19..885 4320 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:03:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15357392..15358258 19..885 4320 99.9 Plus
Blast to na_te.dros performed on 2015-02-11 12:03:26 has no hits.

BS09020.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:56:49 Download gff for BS09020.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5044-PB 1..872 17..885 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:02:11 Download gff for BS09020.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5044-PA 1..869 17..885 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:08:12 Download gff for BS09020.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5044-RA 85..958 12..885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:44:35 Download gff for BS09020.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5044-RA 85..958 12..885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:44:35 Download gff for BS09020.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15357384..15358258 11..885 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:08:12 Download gff for BS09020.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11183106..11183980 11..885 99   Plus

BS09020.complete Sequence

1190 bp assembled on 2009-02-12

> BS09020.complete
GAAGTTATCAGTCGACATGGGCCCTATTCAAAGGTTGGTGTACACATTTG
GTCATCGCACCTGTAGCCAATTGCCGATGATCGGCGGAGCAACGATATCC
CAAACAAAACCAACAACAATGGCTCTCTCCGTTCGCCAATCCTCCTCCTC
CGTGCTGGCCACGGAGTCCTCTAACAAGGGAATGATTATTCTGAACCGGC
CCAAGGCGCTTAACGCCATCAACTTGGAGATGGTACGCAAGATCTACAAG
CACCTGAAGAAGTGCGAGAAGTCCAAGTCGCTGGTGATCATCAAGGGCAC
AGGTGACAAGGCCTTCTGCGCCGGTGGAGATGTGCGCGCTCTGGTCGAGG
CTGGCCCTACGGATGAGTCGAAGAGCTTCTTCCGGGAGGAGTACAGCACG
AATGCCCTGATCGGAAACTATAAGATTCCCTACATCGCCATCATTGACGG
TATTACCATGGGCGGTGGCGTGGGTCTGAGTGTGCATGGCAAGTACCGGG
TGGCCAGCGATCGGACACTGTTCGCCATGCCCGAGACGGCGATTGGCCTC
TTCCCGGATGTGGGTGGATCATACTTCCTGCCTCGACTGCAGGGAAAGCT
GGGCCTCTATCTGGGTCTCACAGGATATCGACTGCGCGGAGCCGATGTCT
ATTACTCAGGCATTGCTACGCACTACTGCGAGAGCAGCAAGATCCCTGAT
CTGGAGACGGCTCTCCTTAACTGCCCGGATGCGGATGATGTGCCTGAGCT
GCTGCAGAAGTACCATTCCCCGCCAGAAAAGCCCTTCTCGCTGCAGCCTG
TCCTGGAGCAGATCAACAAGAACTTTTCAGCGGACTCGGTGGAGGGGATT
CTAGAGAATCTGCAGAACGATGGCAGTGAATGGGCCAAGAAGACGCTTGA
GACGCTCTCGAAGATGTCTCCCACCTCGATGAAGGTTACGTTCCGTCAGT
TGGAGCTCGGATCACAGCTGTCGCTGGCTCAGTGTCTTATTATGGAATAT
CGTCTGGCCGTGCGTCATCTGGAGCGAAGTGATTTCAAGGAGGGAGTGCG
CGCCCTACTCATCGACAAGGATCAGAAGCCCCAGTGGCAGCCAACCAAGC
TGGCCGATGTCACTGAGGAACATGTGCAGTGGTTTTTCCGCAAGCTACCG
GACACCGAGGAACTCAAGCTGTAAAAGCTTTCTAGACCAT

BS09020.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5044-RA 1158 CG5044-PA 1..1158 17..1174 5775 99.9 Plus
CG5044-RB 1161 CG5044-PB 6..1161 19..1174 5765 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5044-RA 1699 CG5044-RA 90..1247 17..1174 5775 99.9 Plus
CG5044-RB 1702 CG5044-RB 95..1250 19..1174 5765 99.9 Plus
ldlCp-RA 3015 CG6177-RA 2685..2959 1174..900 1375 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:48:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15357392..15358274 19..901 4400 99.9 Plus
3R 32079331 3R 15358537..15358811 900..1174 1375 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:48:05 has no hits.

BS09020.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:46 Download gff for BS09020.complete
Subject Subject Range Query Range Percent Splice Strand
CG5044-RA 74..1229 17..1172 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:33:14 Download gff for BS09020.complete
Subject Subject Range Query Range Percent Splice Strand
CG5044-RA 90..1245 17..1172 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:49 Download gff for BS09020.complete
Subject Subject Range Query Range Percent Splice Strand
CG5044-RA 90..1245 17..1172 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:49 Download gff for BS09020.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15358539..15358809 902..1172 100   Plus
3R 15357391..15358274 17..901 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:33:14 Download gff for BS09020.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11183113..11183996 17..901 99 -> Plus
arm_3R 11184261..11184531 902..1172 100   Plus

BS09020.pep Sequence

Translation from 16 to 1173

> BS09020.pep
MGPIQRLVYTFGHRTCSQLPMIGGATISQTKPTTMALSVRQSSSSVLATE
SSNKGMIILNRPKALNAINLEMVRKIYKHLKKCEKSKSLVIIKGTGDKAF
CAGGDVRALVEAGPTDESKSFFREEYSTNALIGNYKIPYIAIIDGITMGG
GVGLSVHGKYRVASDRTLFAMPETAIGLFPDVGGSYFLPRLQGKLGLYLG
LTGYRLRGADVYYSGIATHYCESSKIPDLETALLNCPDADDVPELLQKYH
SPPEKPFSLQPVLEQINKNFSADSVEGILENLQNDGSEWAKKTLETLSKM
SPTSMKVTFRQLELGSQLSLAQCLIMEYRLAVRHLERSDFKEGVRALLID
KDQKPQWQPTKLADVTEEHVQWFFRKLPDTEELKL*

BS09020.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5044-PA 385 CG5044-PA 1..385 1..385 1986 100 Plus
CG5044-PB 386 CG5044-PB 3..386 2..385 1981 100 Plus
CG6543-PA 295 CG6543-PA 45..215 47..218 205 31.6 Plus
CG6543-PB 295 CG6543-PB 45..215 47..218 205 31.6 Plus
CG8778-PA 299 CG8778-PA 51..225 56..228 174 28.4 Plus