Clone Sequence Records
BS09020.3prime Sequence
965 bp (830 high quality bases) assembled on 2006-01-24
> BS09020.3prime
ATGGTCTAGAAAGCTTTTACAGCTTGAGTTCCTCGGTGTCCGGTAGCTTG
CGGAAAAACCACTGCACATGTTCCTCAGTGACATCGGCCAGCTTGGTTGG
CTGCCACTGGGGCTTCTGATCCTTGTCGATGAGTAGGGCGCGCACTCCCT
CCTTGAAATCACTTCGCTCCAGATGACGCACGGCCAGACGATATTCCATA
ATAAGACACTGAGCCAGCGACAGCTGTGATCCGAGCTCCAACTGACGGAA
CGTAACCTTCATCGAGGTGGGAGACATCTTCGAGAGCGTCTCAAGCGTCT
TCTTGGCCCATTCACTGCCATCGTTCTGCAGATTCTCTAGAATCCCCTCC
ACCGAGTCCGCTGAAAAGTTCTTGTTGATCTGCTCCAGGACAGGCTGCAG
CGAGAAGGGCTTTTCTGGCGGGGAATGGTACTTCTGCAGCAGCTCAGGCA
CATCATCCGCATCCGGGCAGTTAAGGAGAGCCGTCTCCAGATCAGGGATC
TTGCTGCTCTCGCAGTAGTGCGTAGCAATGCCTGAGTAATAGACATCGGC
TCCGCGCAGTCGATATCCTGTGAGACCCAGATAGAGGCCCAGCTTTCCCT
GCAGTCGAGGCAGGAAGTATGATCCACCCACATCCGGGAAGAGGCCAATC
GCCGTCTCGGGCATGGCGAACAGTGTCCGATCGCTGGCCACCCGGTACTT
GCCATGCACACTCAGACCCACGCCACCGCCCATGGTAATACCGTCAATGA
TGGCGATGTAGGGAATCTTATAGTTTCCGATCAGGGCATTCGTGCTGTAC
TCCTCCCGGAAGAAGCTCTTCGACTCATCCGTAGGGCCAGCCTCGACCAG
AGCGCGCACATCTCCACCGGCGCAGAAGGCCTTGTCACCTGTGCCCTTGA
TGATCACCAGCGACTTGGACTTCTCGCACTTCTTCAGGTGCTTGTAGATC
TTGCGTACCATCTCC
BS09020.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5044-PA | 1158 | CG5044-RA | 210..1158 | 965..17 | 4745 | 100 | Minus |
CG5044-PB | 1161 | CG5044-RB | 213..1161 | 965..17 | 4745 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:32:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5044-RB | 1702 | CG5044-RB | 302..1250 | 965..17 | 4745 | 100 | Minus |
CG5044-RA | 1699 | CG5044-RA | 299..1247 | 965..17 | 4745 | 100 | Minus |
ldlCp-RA | 3015 | CG6177-RA | 2685..2959 | 17..291 | 1375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:32:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15357599..15358274 | 965..290 | 3380 | 100 | Minus |
3R | 32079331 | 3R | 15358537..15358811 | 291..17 | 1375 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 08:32:40 has no hits.
BS09020.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:56:48 Download gff for
BS09020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5044-PB | 213..1161 | 17..965 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:02:10 Download gff for
BS09020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5044-PB | 213..1161 | 17..965 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:39:43 Download gff for
BS09020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5044-RA | 299..1247 | 17..965 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:54:11 Download gff for
BS09020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5044-RA | 299..1247 | 17..965 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:54:11 Download gff for
BS09020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15357599..15358274 | 290..965 | 100 | -> | Minus |
3R | 15358539..15358811 | 17..289 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:39:43 Download gff for
BS09020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11183321..11183996 | 290..965 | 100 | -> | Minus |
arm_3R | 11184261..11184533 | 17..289 | 100 | | Minus |
BS09020.5prime Sequence
885 bp (765 high quality bases) assembled on 2006-01-24
> BS09020.5prime
GAAGTTATCAGTCGACATGGGCCCTATTCAAAGGTTGGTGTACACATTTG
GTCATCGCACCTGTAGCCAATTGCCGATGATCGGCGGAGCAACGATATCC
CAAACAAAACCAACAACAATGGCTCTCTCCGTTCGCCAATCCTCCTCCTC
CGTGCTGGCCACGGAGTCCTCTAACAAGGGAATGATTATTCTGAACCGGC
CCAAGGCGCTTAACGCCATCAACTTGGAGATGGTACGCAAGATCTACAAG
CACCTGAAGAAGTGCGAGAAGTCCAAGTCGCTGGTGATCATCAAGGGCAC
AGGTGACAAGGCCTTCTGCGCCGGTGGAGATGTGCGCGCTCTGGTCGAGG
CTGGCCCTACGGATGAGTCGAAGAGCTTCTTCCGGGAGGAGTACAGCACG
AATGCCCTGATCGGAAACTATAAGATTCCCTACATCGCCATCATTGACGG
TATTACCATGGGCGGTGGCGTGGGTCTGAGTGTGCATGGCAAGTACCGGG
TGGCCAGCGATCGGACACTGTTCGCCATGCCCGAGACGGCGATTGGCCTC
TTCCCGGATGTGGGTGGATCATACTTCCTGCCTCGACTGCAGGGAAAGCT
GGGCCTCTATCTGGGTCTCACAGGATATCGACTGCGCGGAGCCGATGTCT
ATTACTCAGGCATTGCTACGCACTACTGCGAGAGCAGCAAGATCCCTGAT
CTGGAGACGGCTCTCCTTAACTGCCCGGATGCGGATGATGTGCCTGAGCT
GCTGCAGAAGTACCATTCCCCGCCAGAAAAGCCCTTCTCGCTGCAGCCTG
TCCTGGAGCAGATCAACAAGAACTTTTCAGCGGACTCGGTGGAGGGGATT
CTAGAGAATCTGCAGAACGATGGCAGTGAATGGGC
BS09020.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5044-PA | 1158 | CG5044-RA | 1..869 | 17..885 | 4320 | 99.8 | Plus |
CG5044-PB | 1161 | CG5044-RB | 6..872 | 19..885 | 4310 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:03:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5044-RA | 1699 | CG5044-RA | 90..958 | 17..885 | 4330 | 99.9 | Plus |
CG5044-RB | 1702 | CG5044-RB | 95..961 | 19..885 | 4320 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:03:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15357392..15358258 | 19..885 | 4320 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:03:26 has no hits.
BS09020.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:56:49 Download gff for
BS09020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5044-PB | 1..872 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:02:11 Download gff for
BS09020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5044-PA | 1..869 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:08:12 Download gff for
BS09020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5044-RA | 85..958 | 12..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:44:35 Download gff for
BS09020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5044-RA | 85..958 | 12..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:44:35 Download gff for
BS09020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15357384..15358258 | 11..885 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:08:12 Download gff for
BS09020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11183106..11183980 | 11..885 | 99 | | Plus |
BS09020.complete Sequence
1190 bp assembled on 2009-02-12
> BS09020.complete
GAAGTTATCAGTCGACATGGGCCCTATTCAAAGGTTGGTGTACACATTTG
GTCATCGCACCTGTAGCCAATTGCCGATGATCGGCGGAGCAACGATATCC
CAAACAAAACCAACAACAATGGCTCTCTCCGTTCGCCAATCCTCCTCCTC
CGTGCTGGCCACGGAGTCCTCTAACAAGGGAATGATTATTCTGAACCGGC
CCAAGGCGCTTAACGCCATCAACTTGGAGATGGTACGCAAGATCTACAAG
CACCTGAAGAAGTGCGAGAAGTCCAAGTCGCTGGTGATCATCAAGGGCAC
AGGTGACAAGGCCTTCTGCGCCGGTGGAGATGTGCGCGCTCTGGTCGAGG
CTGGCCCTACGGATGAGTCGAAGAGCTTCTTCCGGGAGGAGTACAGCACG
AATGCCCTGATCGGAAACTATAAGATTCCCTACATCGCCATCATTGACGG
TATTACCATGGGCGGTGGCGTGGGTCTGAGTGTGCATGGCAAGTACCGGG
TGGCCAGCGATCGGACACTGTTCGCCATGCCCGAGACGGCGATTGGCCTC
TTCCCGGATGTGGGTGGATCATACTTCCTGCCTCGACTGCAGGGAAAGCT
GGGCCTCTATCTGGGTCTCACAGGATATCGACTGCGCGGAGCCGATGTCT
ATTACTCAGGCATTGCTACGCACTACTGCGAGAGCAGCAAGATCCCTGAT
CTGGAGACGGCTCTCCTTAACTGCCCGGATGCGGATGATGTGCCTGAGCT
GCTGCAGAAGTACCATTCCCCGCCAGAAAAGCCCTTCTCGCTGCAGCCTG
TCCTGGAGCAGATCAACAAGAACTTTTCAGCGGACTCGGTGGAGGGGATT
CTAGAGAATCTGCAGAACGATGGCAGTGAATGGGCCAAGAAGACGCTTGA
GACGCTCTCGAAGATGTCTCCCACCTCGATGAAGGTTACGTTCCGTCAGT
TGGAGCTCGGATCACAGCTGTCGCTGGCTCAGTGTCTTATTATGGAATAT
CGTCTGGCCGTGCGTCATCTGGAGCGAAGTGATTTCAAGGAGGGAGTGCG
CGCCCTACTCATCGACAAGGATCAGAAGCCCCAGTGGCAGCCAACCAAGC
TGGCCGATGTCACTGAGGAACATGTGCAGTGGTTTTTCCGCAAGCTACCG
GACACCGAGGAACTCAAGCTGTAAAAGCTTTCTAGACCAT
BS09020.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:48:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5044-RA | 1158 | CG5044-PA | 1..1158 | 17..1174 | 5775 | 99.9 | Plus |
CG5044-RB | 1161 | CG5044-PB | 6..1161 | 19..1174 | 5765 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:48:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5044-RA | 1699 | CG5044-RA | 90..1247 | 17..1174 | 5775 | 99.9 | Plus |
CG5044-RB | 1702 | CG5044-RB | 95..1250 | 19..1174 | 5765 | 99.9 | Plus |
ldlCp-RA | 3015 | CG6177-RA | 2685..2959 | 1174..900 | 1375 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:48:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15357392..15358274 | 19..901 | 4400 | 99.9 | Plus |
3R | 32079331 | 3R | 15358537..15358811 | 900..1174 | 1375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:48:05 has no hits.
BS09020.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:46 Download gff for
BS09020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5044-RA | 74..1229 | 17..1172 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:33:14 Download gff for
BS09020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5044-RA | 90..1245 | 17..1172 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:49 Download gff for
BS09020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5044-RA | 90..1245 | 17..1172 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:49 Download gff for
BS09020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15358539..15358809 | 902..1172 | 100 | | Plus |
3R | 15357391..15358274 | 17..901 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:33:14 Download gff for
BS09020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11183113..11183996 | 17..901 | 99 | -> | Plus |
arm_3R | 11184261..11184531 | 902..1172 | 100 | | Plus |
BS09020.pep Sequence
Translation from 16 to 1173
> BS09020.pep
MGPIQRLVYTFGHRTCSQLPMIGGATISQTKPTTMALSVRQSSSSVLATE
SSNKGMIILNRPKALNAINLEMVRKIYKHLKKCEKSKSLVIIKGTGDKAF
CAGGDVRALVEAGPTDESKSFFREEYSTNALIGNYKIPYIAIIDGITMGG
GVGLSVHGKYRVASDRTLFAMPETAIGLFPDVGGSYFLPRLQGKLGLYLG
LTGYRLRGADVYYSGIATHYCESSKIPDLETALLNCPDADDVPELLQKYH
SPPEKPFSLQPVLEQINKNFSADSVEGILENLQNDGSEWAKKTLETLSKM
SPTSMKVTFRQLELGSQLSLAQCLIMEYRLAVRHLERSDFKEGVRALLID
KDQKPQWQPTKLADVTEEHVQWFFRKLPDTEELKL*
BS09020.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5044-PA | 385 | CG5044-PA | 1..385 | 1..385 | 1986 | 100 | Plus |
CG5044-PB | 386 | CG5044-PB | 3..386 | 2..385 | 1981 | 100 | Plus |
CG6543-PA | 295 | CG6543-PA | 45..215 | 47..218 | 205 | 31.6 | Plus |
CG6543-PB | 295 | CG6543-PB | 45..215 | 47..218 | 205 | 31.6 | Plus |
CG8778-PA | 299 | CG8778-PA | 51..225 | 56..228 | 174 | 28.4 | Plus |