Clone Sequence Records
BS09023.3prime Sequence
907 bp (809 high quality bases) assembled on 2006-01-24
> BS09023.3prime
ATGGTCTAGAAAGCTTTTAAACTTGTACGTCGGGATGCTTGCCCTCGTTA
TTGTAATCAGCGCTCAGCAACGTCTCAGACAGCTCCTTTCTGGCCTTCTG
CAATACCCAGAACATCAAGGCCACGCCGCAAATTACCTCAAACAGGAAGC
TGATATACCCCGTCAGTTTGGTATCGTTATCACTGAGCACTTCATGCATG
GACCTTAGCGTGGAACCCAAGTAAACATTGATGGTTTGGGCTGGCAGCAA
ACCAATCAGCGTGGCCACATGGTAGTCTCTTGTGTTGATGGAACTGATTC
CGAATATCACATTCTGCACTCCGAAGGGAATGGGGGTAAGTCGGGTAAAG
AGAACGACTCGAAATGCCTTTGGGCCAGAAATGACGCGAAGAATGGCTCG
TCCCGTATCATTCTTGATCAGCCTTTGGACGGGAATGCGGTGCCGGCAGC
TGCGAATGGTGGCATGGGCCACGGCTATGCCGATATTGGCGCCCAGGATC
ACGGTGACCCAACCGCGCAGGCAGCCGAACAGGTAACCGGCGGTGATGAG
CAGAACGAAGTAGCCCACCACCACGGGGAAGCTGACAAGAGCGAAGAGCC
CCATGTAGACGGCAAATGTTATCCAGGCGTTCTGCATTTCGATCCAAAAG
AGCAATTGGCGAGCATAGTCCCGCGTCGCCCATCCGATGAAGACGAGGGC
GCCTAGAATGGTGGCGGGCACTAAGCAGCCCAGGTACCAGTTGCGGGTGA
GAAAGCTGTGGGCTCGTCCCCAACACGAGTTGCGCTTCCGGTTGTGTAGC
ACAGAGGTGGTGGCGGAGGAGCGGGTAGCTCTCCGACTGGCTAGAAACGG
GTCACATTCGCTGTCCTCCGACGTGTCGGGTGTGCGCTGGGCGGCGAAGA
GAGCTTC
BS09023.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11367-PA | 1089 | CG11367-RA | 199..1089 | 907..17 | 4430 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:47:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11367-RA | 1796 | CG11367-RA | 499..1389 | 907..17 | 4440 | 99.9 | Minus |
CG11241-RC | 3149 | CG11241-RC | 2417..2581 | 134..298 | 825 | 100 | Plus |
CG11241-RC | 3149 | CG11241-RC | 3022..3147 | 299..424 | 630 | 100 | Plus |
CG11241-RC | 3149 | CG11241-RC | 2123..2248 | 17..142 | 615 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:46:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22728609..22729094 | 907..422 | 2415 | 99.8 | Minus |
3L | 28110227 | 3L | 22732581..22732745 | 298..134 | 825 | 100 | Minus |
3L | 28110227 | 3L | 22732015..22732140 | 424..299 | 630 | 100 | Minus |
3L | 28110227 | 3L | 22732914..22733039 | 142..17 | 615 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:47:01 has no hits.
BS09023.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:56:54 Download gff for
BS09023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11367-PA | 199..1089 | 17..907 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:02:18 Download gff for
BS09023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11367-PA | 199..1089 | 17..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:15:15 Download gff for
BS09023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11367-RA | 499..1392 | 14..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:37 Download gff for
BS09023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11367-RA | 499..1392 | 14..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:37 Download gff for
BS09023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22728609..22729093 | 423..907 | 99 | -> | Minus |
3L | 22732017..22732140 | 299..422 | 100 | -> | Minus |
3L | 22732581..22732742 | 137..298 | 100 | -> | Minus |
3L | 22732920..22733042 | 14..136 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:15:15 Download gff for
BS09023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22721709..22722193 | 423..907 | 99 | -> | Minus |
arm_3L | 22725117..22725240 | 299..422 | 100 | -> | Minus |
arm_3L | 22725681..22725842 | 137..298 | 100 | -> | Minus |
arm_3L | 22726020..22726142 | 14..136 | 99 | | Minus |
BS09023.5prime Sequence
914 bp (836 high quality bases) assembled on 2006-01-24
> BS09023.5prime
GAAGTTATCAGTCGACATGTCATGCAACAATAACAACAACTATAAAAACA
AAACCACGTACGGCTATTCGAACAACAATGATACCAACTGCATCATGCAG
AAGCCAGTGCCCGCCTCCACCGCACCCGCCTTCCCTCAGCTGATCCAGGC
CAGCTGTTCCAACGCCGTGGAGGTGGATCCACCAGACAGCATTGTGGGGG
CTGCCGGCAACTCCGAAGCTCTCTTCGCCGCCCAGCGCACACCGGACACG
TCGGAGGACAGCGAATGTGACCCGTTTCTAGCCAGTCGGAGAGCTACCCG
CTCCTCCGCCACCACCTCTGTGCTACACAACCGGAAGCGCAACTCGTGTT
GGGGACGAGCCCACAGCTTTCTCACCCGCAACTGGTACCTGGGCTGCTTA
GTGCCCGCCACCATTCTAGGCGCCCTCGTCTTCATCGGATGGGCGACGCG
GGACTATGCTCGCCAATTGCTCTTTTGGATCGAAATGCAGAACGCCTGGA
TAACATTTGCCGTCTACATGGGGCTCTTCGCTCTTGTCAGCTTCCCCGTG
GTGGTGGGCTACTTCGTTCTGCTCATCACCGCCGGTTACCTGTTCGGCTG
CCTGCGCGGTTGGGTCACCGTGATCCTGGGCGCCAATATCGGCATAGCCG
TGGCCCATGCCACCATTCGCAGCTGCCGGCACCGCATTCCCGTCCAAAGG
CTGATCAAGAATGATACGGGACGAGCCATTCTTCGCGTCATTTCTGGCCC
AAAGGCATTTCGAGTCGTTCTCTTTACCCGACTTACCCCCATTCCCTTCG
GAGTGCAGAATGTGATATTCGGAATCAGTTCCATCAACACAAGAGACTAC
CATGTGGCCACGCTGATTGGTTTGCTGCCAGCCCAAACCATCAATGTTTA
CTGGGGTTCACGCT
BS09023.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11367-PA | 1089 | CG11367-RA | 1..893 | 17..909 | 4440 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:29:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11367-RA | 1796 | CG11367-RA | 300..1199 | 16..914 | 4460 | 99.8 | Plus |
CG11241-RC | 3149 | CG11241-RC | 3022..3147 | 823..698 | 630 | 100 | Minus |
CG11241-RC | 3149 | CG11241-RC | 2490..2581 | 914..824 | 420 | 97.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:29:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22728410..22729094 | 16..700 | 3425 | 100 | Plus |
3L | 28110227 | 3L | 22732015..22732140 | 698..823 | 630 | 100 | Plus |
3L | 28110227 | 3L | 22732581..22732666 | 824..909 | 415 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:29:12 has no hits.
BS09023.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:56:55 Download gff for
BS09023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11367-PA | 1..899 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:02:19 Download gff for
BS09023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11367-PA | 1..899 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:24:14 Download gff for
BS09023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11367-RA | 292..1199 | 7..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:46:33 Download gff for
BS09023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11367-RA | 292..1199 | 7..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:46:33 Download gff for
BS09023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22728402..22729093 | 7..699 | 99 | -> | Plus |
3L | 22732017..22732140 | 700..823 | 100 | -> | Plus |
3L | 22732581..22732672 | 824..914 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:24:14 Download gff for
BS09023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22721502..22722193 | 7..699 | 99 | -> | Plus |
arm_3L | 22725117..22725240 | 700..823 | 100 | -> | Plus |
arm_3L | 22725681..22725772 | 824..914 | 97 | | Plus |
BS09023.complete Sequence
1121 bp (1121 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636338
> BS09023.complete
GAAGTTATCAGTCGACATGTCATGCAACAATAACAACAACTATAAAAACA
AAACCACGTACGGCTATTCGAACAACAATGATACCAACTGCATCATGCAG
AAGCCAGTGCCCGCCTCCACCGCACCCGCCTTCCCTCAGCTGATCCAGGC
CAGCTGTTCCAACGCCGTGGAGGTGGATCCACCAGACAGCATTGTGGGGG
CTGCCGGCAACTCCGAAGCTCTCTTCGCCGCCCAGCGCACACCGGACACG
TCGGAGGACAGCGAATGTGACCCGTTTCTAGCCAGTCGGAGAGCTACCCG
CTCCTCCGCCACCACCTCTGTGCTACACAACCGGAAGCGCAACTCGTGTT
GGGGACGAGCCCACAGCTTTCTCACCCGCAACTGGTACCTGGGCTGCTTA
GTGCCCGCCACCATTCTAGGCGCCCTCGTCTTCATCGGATGGGCGACGCG
GGACTATGCTCGCCAATTGCTCTTTTGGATCGAAATGCAGAACGCCTGGA
TAACATTTGCCGTCTACATGGGGCTCTTCGCTCTTGTCAGCTTCCCCGTG
GTGGTGGGCTACTTCGTTCTGCTCATCACCGCCGGTTACCTGTTCGGCTG
CCTGCGCGGTTGGGTCACCGTGATCCTGGGCGCCAATATCGGCATAGCCG
TGGCCCATGCCACCATTCGCAGCTGCCGGCACCGCATTCCCGTCCAAAGG
CTGATCAAGAATGATACGGGACGAGCCATTCTTCGCGTCATTTCTGGCCC
AAAGGCATTTCGAGTCGTTCTCTTTACCCGACTTACCCCCATTCCCTTCG
GAGTGCAGAATGTGATATTCGGAATCAGTTCCATCAACACAAGAGACTAC
CATGTGGCCACGCTGATTGGTTTGCTGCCAGCCCAAACCATCAATGTTTA
CTTGGGTTCCACGCTAAGGTCCATGCATGAAGTGCTCAGTGATAACGATA
CCAAACTGACGGGGTATATCAGCTTCCTGTTTGAGGTAATTTGCGGCGTG
GCCTTGATGTTCTGGGTATTGCAGAAGGCCAGAAAGGAGCTGTCTGAGAC
GTTGCTGAGCGCTGATTACAATAACGAGGGCAAGCATCCCGACGTACAAG
TTTAAAAGCTTTCTAGACCAT
BS09023.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:06:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11367-RA | 1089 | CG11367-PA | 1..1089 | 17..1105 | 5445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:06:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11367-RA | 1796 | CG11367-RA | 300..1389 | 16..1105 | 5450 | 100 | Plus |
CG11241-RC | 3149 | CG11241-RC | 2417..2581 | 988..824 | 825 | 100 | Minus |
CG11241-RC | 3149 | CG11241-RC | 3022..3147 | 823..698 | 630 | 100 | Minus |
CG11241-RC | 3149 | CG11241-RC | 2123..2248 | 1105..980 | 615 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:06:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22728410..22729094 | 16..700 | 3425 | 100 | Plus |
3L | 28110227 | 3L | 22732581..22732745 | 824..988 | 825 | 100 | Plus |
3L | 28110227 | 3L | 22732015..22732140 | 698..823 | 630 | 100 | Plus |
3L | 28110227 | 3L | 22732914..22733039 | 980..1105 | 615 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:06:32 has no hits.
BS09023.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:51:03 Download gff for
BS09023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11367-RA | 1..1089 | 17..1105 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:47 Download gff for
BS09023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11367-RA | 296..1396 | 7..1108 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:55 Download gff for
BS09023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11367-RA | 301..1387 | 17..1103 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:51:04 Download gff for
BS09023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11367-RA | 296..1396 | 7..1108 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:25 Download gff for
BS09023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11367-RA | 301..1387 | 17..1103 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:25 Download gff for
BS09023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22728411..22729093 | 17..699 | 100 | -> | Plus |
3L | 22732017..22732140 | 700..823 | 100 | -> | Plus |
3L | 22732581..22732742 | 824..985 | 100 | -> | Plus |
3L | 22732920..22733037 | 986..1103 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:55 Download gff for
BS09023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22721511..22722193 | 17..699 | 100 | -> | Plus |
arm_3L | 22725117..22725240 | 700..823 | 100 | -> | Plus |
arm_3L | 22725681..22725842 | 824..985 | 100 | -> | Plus |
arm_3L | 22726020..22726137 | 986..1103 | 100 | | Plus |
BS09023.pep Sequence
Translation from 16 to 1104
> BS09023.pep
MSCNNNNNYKNKTTYGYSNNNDTNCIMQKPVPASTAPAFPQLIQASCSNA
VEVDPPDSIVGAAGNSEALFAAQRTPDTSEDSECDPFLASRRATRSSATT
SVLHNRKRNSCWGRAHSFLTRNWYLGCLVPATILGALVFIGWATRDYARQ
LLFWIEMQNAWITFAVYMGLFALVSFPVVVGYFVLLITAGYLFGCLRGWV
TVILGANIGIAVAHATIRSCRHRIPVQRLIKNDTGRAILRVISGPKAFRV
VLFTRLTPIPFGVQNVIFGISSINTRDYHVATLIGLLPAQTINVYLGSTL
RSMHEVLSDNDTKLTGYISFLFEVICGVALMFWVLQKARKELSETLLSAD
YNNEGKHPDVQV*
BS09023.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:48:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11367-PA | 362 | CG11367-PA | 1..362 | 1..362 | 1895 | 100 | Plus |