Clone BS09023 Report

Search the DGRC for BS09023

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:90
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptCG11367-RA
Protein status:BS09023.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09023.3prime Sequence

907 bp (809 high quality bases) assembled on 2006-01-24

> BS09023.3prime
ATGGTCTAGAAAGCTTTTAAACTTGTACGTCGGGATGCTTGCCCTCGTTA
TTGTAATCAGCGCTCAGCAACGTCTCAGACAGCTCCTTTCTGGCCTTCTG
CAATACCCAGAACATCAAGGCCACGCCGCAAATTACCTCAAACAGGAAGC
TGATATACCCCGTCAGTTTGGTATCGTTATCACTGAGCACTTCATGCATG
GACCTTAGCGTGGAACCCAAGTAAACATTGATGGTTTGGGCTGGCAGCAA
ACCAATCAGCGTGGCCACATGGTAGTCTCTTGTGTTGATGGAACTGATTC
CGAATATCACATTCTGCACTCCGAAGGGAATGGGGGTAAGTCGGGTAAAG
AGAACGACTCGAAATGCCTTTGGGCCAGAAATGACGCGAAGAATGGCTCG
TCCCGTATCATTCTTGATCAGCCTTTGGACGGGAATGCGGTGCCGGCAGC
TGCGAATGGTGGCATGGGCCACGGCTATGCCGATATTGGCGCCCAGGATC
ACGGTGACCCAACCGCGCAGGCAGCCGAACAGGTAACCGGCGGTGATGAG
CAGAACGAAGTAGCCCACCACCACGGGGAAGCTGACAAGAGCGAAGAGCC
CCATGTAGACGGCAAATGTTATCCAGGCGTTCTGCATTTCGATCCAAAAG
AGCAATTGGCGAGCATAGTCCCGCGTCGCCCATCCGATGAAGACGAGGGC
GCCTAGAATGGTGGCGGGCACTAAGCAGCCCAGGTACCAGTTGCGGGTGA
GAAAGCTGTGGGCTCGTCCCCAACACGAGTTGCGCTTCCGGTTGTGTAGC
ACAGAGGTGGTGGCGGAGGAGCGGGTAGCTCTCCGACTGGCTAGAAACGG
GTCACATTCGCTGTCCTCCGACGTGTCGGGTGTGCGCTGGGCGGCGAAGA
GAGCTTC

BS09023.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG11367-PA 1089 CG11367-RA 199..1089 907..17 4430 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG11367-RA 1796 CG11367-RA 499..1389 907..17 4440 99.9 Minus
CG11241-RC 3149 CG11241-RC 2417..2581 134..298 825 100 Plus
CG11241-RC 3149 CG11241-RC 3022..3147 299..424 630 100 Plus
CG11241-RC 3149 CG11241-RC 2123..2248 17..142 615 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22728609..22729094 907..422 2415 99.8 Minus
3L 28110227 3L 22732581..22732745 298..134 825 100 Minus
3L 28110227 3L 22732015..22732140 424..299 630 100 Minus
3L 28110227 3L 22732914..22733039 142..17 615 99.2 Minus
Blast to na_te.dros performed on 2015-02-10 17:47:01 has no hits.

BS09023.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:56:54 Download gff for BS09023.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11367-PA 199..1089 17..907 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:02:18 Download gff for BS09023.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11367-PA 199..1089 17..907 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:15:15 Download gff for BS09023.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11367-RA 499..1392 14..907 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:37 Download gff for BS09023.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11367-RA 499..1392 14..907 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:37 Download gff for BS09023.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 22728609..22729093 423..907 99 -> Minus
3L 22732017..22732140 299..422 100 -> Minus
3L 22732581..22732742 137..298 100 -> Minus
3L 22732920..22733042 14..136 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:15:15 Download gff for BS09023.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22721709..22722193 423..907 99 -> Minus
arm_3L 22725117..22725240 299..422 100 -> Minus
arm_3L 22725681..22725842 137..298 100 -> Minus
arm_3L 22726020..22726142 14..136 99   Minus

BS09023.5prime Sequence

914 bp (836 high quality bases) assembled on 2006-01-24

> BS09023.5prime
GAAGTTATCAGTCGACATGTCATGCAACAATAACAACAACTATAAAAACA
AAACCACGTACGGCTATTCGAACAACAATGATACCAACTGCATCATGCAG
AAGCCAGTGCCCGCCTCCACCGCACCCGCCTTCCCTCAGCTGATCCAGGC
CAGCTGTTCCAACGCCGTGGAGGTGGATCCACCAGACAGCATTGTGGGGG
CTGCCGGCAACTCCGAAGCTCTCTTCGCCGCCCAGCGCACACCGGACACG
TCGGAGGACAGCGAATGTGACCCGTTTCTAGCCAGTCGGAGAGCTACCCG
CTCCTCCGCCACCACCTCTGTGCTACACAACCGGAAGCGCAACTCGTGTT
GGGGACGAGCCCACAGCTTTCTCACCCGCAACTGGTACCTGGGCTGCTTA
GTGCCCGCCACCATTCTAGGCGCCCTCGTCTTCATCGGATGGGCGACGCG
GGACTATGCTCGCCAATTGCTCTTTTGGATCGAAATGCAGAACGCCTGGA
TAACATTTGCCGTCTACATGGGGCTCTTCGCTCTTGTCAGCTTCCCCGTG
GTGGTGGGCTACTTCGTTCTGCTCATCACCGCCGGTTACCTGTTCGGCTG
CCTGCGCGGTTGGGTCACCGTGATCCTGGGCGCCAATATCGGCATAGCCG
TGGCCCATGCCACCATTCGCAGCTGCCGGCACCGCATTCCCGTCCAAAGG
CTGATCAAGAATGATACGGGACGAGCCATTCTTCGCGTCATTTCTGGCCC
AAAGGCATTTCGAGTCGTTCTCTTTACCCGACTTACCCCCATTCCCTTCG
GAGTGCAGAATGTGATATTCGGAATCAGTTCCATCAACACAAGAGACTAC
CATGTGGCCACGCTGATTGGTTTGCTGCCAGCCCAAACCATCAATGTTTA
CTGGGGTTCACGCT

BS09023.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG11367-PA 1089 CG11367-RA 1..893 17..909 4440 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:29:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11367-RA 1796 CG11367-RA 300..1199 16..914 4460 99.8 Plus
CG11241-RC 3149 CG11241-RC 3022..3147 823..698 630 100 Minus
CG11241-RC 3149 CG11241-RC 2490..2581 914..824 420 97.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22728410..22729094 16..700 3425 100 Plus
3L 28110227 3L 22732015..22732140 698..823 630 100 Plus
3L 28110227 3L 22732581..22732666 824..909 415 98.8 Plus
Blast to na_te.dros performed on 2015-02-12 11:29:12 has no hits.

BS09023.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:56:55 Download gff for BS09023.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11367-PA 1..899 17..914 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:02:19 Download gff for BS09023.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11367-PA 1..899 17..914 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:24:14 Download gff for BS09023.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11367-RA 292..1199 7..914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:46:33 Download gff for BS09023.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11367-RA 292..1199 7..914 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:46:33 Download gff for BS09023.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22728402..22729093 7..699 99 -> Plus
3L 22732017..22732140 700..823 100 -> Plus
3L 22732581..22732672 824..914 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:24:14 Download gff for BS09023.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22721502..22722193 7..699 99 -> Plus
arm_3L 22725117..22725240 700..823 100 -> Plus
arm_3L 22725681..22725772 824..914 97   Plus

BS09023.complete Sequence

1121 bp (1121 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636338

> BS09023.complete
GAAGTTATCAGTCGACATGTCATGCAACAATAACAACAACTATAAAAACA
AAACCACGTACGGCTATTCGAACAACAATGATACCAACTGCATCATGCAG
AAGCCAGTGCCCGCCTCCACCGCACCCGCCTTCCCTCAGCTGATCCAGGC
CAGCTGTTCCAACGCCGTGGAGGTGGATCCACCAGACAGCATTGTGGGGG
CTGCCGGCAACTCCGAAGCTCTCTTCGCCGCCCAGCGCACACCGGACACG
TCGGAGGACAGCGAATGTGACCCGTTTCTAGCCAGTCGGAGAGCTACCCG
CTCCTCCGCCACCACCTCTGTGCTACACAACCGGAAGCGCAACTCGTGTT
GGGGACGAGCCCACAGCTTTCTCACCCGCAACTGGTACCTGGGCTGCTTA
GTGCCCGCCACCATTCTAGGCGCCCTCGTCTTCATCGGATGGGCGACGCG
GGACTATGCTCGCCAATTGCTCTTTTGGATCGAAATGCAGAACGCCTGGA
TAACATTTGCCGTCTACATGGGGCTCTTCGCTCTTGTCAGCTTCCCCGTG
GTGGTGGGCTACTTCGTTCTGCTCATCACCGCCGGTTACCTGTTCGGCTG
CCTGCGCGGTTGGGTCACCGTGATCCTGGGCGCCAATATCGGCATAGCCG
TGGCCCATGCCACCATTCGCAGCTGCCGGCACCGCATTCCCGTCCAAAGG
CTGATCAAGAATGATACGGGACGAGCCATTCTTCGCGTCATTTCTGGCCC
AAAGGCATTTCGAGTCGTTCTCTTTACCCGACTTACCCCCATTCCCTTCG
GAGTGCAGAATGTGATATTCGGAATCAGTTCCATCAACACAAGAGACTAC
CATGTGGCCACGCTGATTGGTTTGCTGCCAGCCCAAACCATCAATGTTTA
CTTGGGTTCCACGCTAAGGTCCATGCATGAAGTGCTCAGTGATAACGATA
CCAAACTGACGGGGTATATCAGCTTCCTGTTTGAGGTAATTTGCGGCGTG
GCCTTGATGTTCTGGGTATTGCAGAAGGCCAGAAAGGAGCTGTCTGAGAC
GTTGCTGAGCGCTGATTACAATAACGAGGGCAAGCATCCCGACGTACAAG
TTTAAAAGCTTTCTAGACCAT

BS09023.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG11367-RA 1089 CG11367-PA 1..1089 17..1105 5445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:06:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG11367-RA 1796 CG11367-RA 300..1389 16..1105 5450 100 Plus
CG11241-RC 3149 CG11241-RC 2417..2581 988..824 825 100 Minus
CG11241-RC 3149 CG11241-RC 3022..3147 823..698 630 100 Minus
CG11241-RC 3149 CG11241-RC 2123..2248 1105..980 615 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22728410..22729094 16..700 3425 100 Plus
3L 28110227 3L 22732581..22732745 824..988 825 100 Plus
3L 28110227 3L 22732015..22732140 698..823 630 100 Plus
3L 28110227 3L 22732914..22733039 980..1105 615 99.2 Plus
Blast to na_te.dros performed on 2014-11-28 00:06:32 has no hits.

BS09023.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:51:03 Download gff for BS09023.complete
Subject Subject Range Query Range Percent Splice Strand
CG11367-RA 1..1089 17..1105 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:47 Download gff for BS09023.complete
Subject Subject Range Query Range Percent Splice Strand
CG11367-RA 296..1396 7..1108 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:55 Download gff for BS09023.complete
Subject Subject Range Query Range Percent Splice Strand
CG11367-RA 301..1387 17..1103 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:51:04 Download gff for BS09023.complete
Subject Subject Range Query Range Percent Splice Strand
CG11367-RA 296..1396 7..1108 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:25 Download gff for BS09023.complete
Subject Subject Range Query Range Percent Splice Strand
CG11367-RA 301..1387 17..1103 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:25 Download gff for BS09023.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22728411..22729093 17..699 100 -> Plus
3L 22732017..22732140 700..823 100 -> Plus
3L 22732581..22732742 824..985 100 -> Plus
3L 22732920..22733037 986..1103 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:55 Download gff for BS09023.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22721511..22722193 17..699 100 -> Plus
arm_3L 22725117..22725240 700..823 100 -> Plus
arm_3L 22725681..22725842 824..985 100 -> Plus
arm_3L 22726020..22726137 986..1103 100   Plus

BS09023.pep Sequence

Translation from 16 to 1104

> BS09023.pep
MSCNNNNNYKNKTTYGYSNNNDTNCIMQKPVPASTAPAFPQLIQASCSNA
VEVDPPDSIVGAAGNSEALFAAQRTPDTSEDSECDPFLASRRATRSSATT
SVLHNRKRNSCWGRAHSFLTRNWYLGCLVPATILGALVFIGWATRDYARQ
LLFWIEMQNAWITFAVYMGLFALVSFPVVVGYFVLLITAGYLFGCLRGWV
TVILGANIGIAVAHATIRSCRHRIPVQRLIKNDTGRAILRVISGPKAFRV
VLFTRLTPIPFGVQNVIFGISSINTRDYHVATLIGLLPAQTINVYLGSTL
RSMHEVLSDNDTKLTGYISFLFEVICGVALMFWVLQKARKELSETLLSAD
YNNEGKHPDVQV*

BS09023.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:48:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG11367-PA 362 CG11367-PA 1..362 1..362 1895 100 Plus