Clone Sequence Records
BS09025.5prime Sequence
462 bp (461 high quality bases) assembled on 2006-01-24
> BS09025.5prime
GAAGTTATCAGTCGACATGACCGAACCAAGGACGCCCGAGAAGCTGCTGG
CCGCCAAGCCGCCGGTTTTACACCACAACAGCCATAGTCCCAATGCCTCG
CTGCAGCTGCCCAGTCCCATCATCACGAGGCGCACTCGCACGGCCTCGAC
CTCCGCTCGGGCCTTGGAAAATCCGGTTGTGACCGGTATGGTGAAATCCT
TCAGCCGCACCAAAGGACACGGCTTCATTACACCCAACGCCGGCGGAGAG
GACGTTTTTTGCCACGTTTCCGACATCGAAGGTGAATATGTGCCCATGCC
CGGGGACGAGGTCAAATACCGTCTGTGCGCCATTCCGCCCAAGTATGAGA
AGCACCAGGCCGTGCACGTGCAGATTAGCCACCTGACGCCGGAGGTGCAC
CACAAGTGGGAGGAGCCATTCTATGGTGGCTCCTCGCCCGCTAAGTAAAA
GCTTTCTAGACC
BS09025.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9705-PB | 432 | CG9705-RB | 1..432 | 17..448 | 2160 | 100 | Plus |
CG9705-PA | 432 | CG9705-RA | 1..432 | 17..448 | 2160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:46:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9705-RC | 1035 | CG9705-RC | 22..455 | 16..449 | 2170 | 100 | Plus |
CG9705-RA | 1570 | CG9705-RA | 557..990 | 16..449 | 2170 | 100 | Plus |
CG9705-RB | 1486 | CG9705-RB | 473..906 | 16..449 | 2170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:46:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16781664..16781839 | 274..449 | 880 | 100 | Plus |
3L | 28110227 | 3L | 16780656..16780790 | 16..150 | 675 | 100 | Plus |
3L | 28110227 | 3L | 16781463..16781585 | 151..273 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:46:53 has no hits.
BS09025.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:57:00 Download gff for
BS09025.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9705-PB | 1..432 | 17..448 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:02:25 Download gff for
BS09025.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9705-PA | 1..432 | 17..448 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 12:36:22 Download gff for
BS09025.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9705-RB | 470..909 | 10..453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:06:20 Download gff for
BS09025.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9705-RB | 470..909 | 10..453 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:06:20 Download gff for
BS09025.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16780653..16780790 | 10..150 | 97 | -> | Plus |
3L | 16781463..16781585 | 151..273 | 100 | -> | Plus |
3L | 16781664..16781842 | 274..453 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 12:36:22 Download gff for
BS09025.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16773753..16773890 | 10..150 | 97 | -> | Plus |
arm_3L | 16774563..16774685 | 151..273 | 100 | -> | Plus |
arm_3L | 16774764..16774942 | 274..453 | 99 | | Plus |
BS09025.3prime Sequence
462 bp (461 high quality bases) assembled on 2006-01-24
> BS09025.3prime
ATGGTCTAGAAAGCTTTTACTTAGCGGGCGAGGAGCCACCATAGAATGGC
TCCTCCCACTTGTGGTGCACCTCCGGCGTCAGGTGGCTAATCTGCACGTG
CACGGCCTGGTGCTTCTCATACTTGGGCGGAATGGCGCACAGACGGTATT
TGACCTCGTCCCCGGGCATGGGCACATATTCACCTTCGATGTCGGAAACG
TGGCAAAAAACGTCCTCTCCGCCGGCGTTGGGTGTAATGAAGCCGTGTCC
TTTGGTGCGGCTGAAGGATTTCACCATACCGGTCACAACCGGATTTTCCA
AGGCCCGAGCGGAGGTCGAGGCCGTGCGAGTGCGCCTCGTGATGATGGGA
CTGGGCAGCTGCAGCGAGGCATTGGGACTATGGCTGTTGTGGTGTAAAAC
CGGCGGCTTGGCGGCCAGCAGCTTCTCGGGCGTCCTTGGTTCGGTCATGT
CGACTGATAACT
BS09025.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9705-PB | 432 | CG9705-RB | 1..432 | 448..17 | 2160 | 100 | Minus |
CG9705-PA | 432 | CG9705-RA | 1..432 | 448..17 | 2160 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:45:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9705-RC | 1035 | CG9705-RC | 22..455 | 449..16 | 2170 | 100 | Minus |
CG9705-RA | 1570 | CG9705-RA | 557..990 | 449..16 | 2170 | 100 | Minus |
CG9705-RB | 1486 | CG9705-RB | 473..906 | 449..16 | 2170 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:45:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16781664..16781839 | 191..16 | 880 | 100 | Minus |
3L | 28110227 | 3L | 16780656..16780790 | 449..315 | 675 | 100 | Minus |
3L | 28110227 | 3L | 16781463..16781585 | 314..192 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:45:22 has no hits.
BS09025.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:56:59 Download gff for
BS09025.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9705-PB | 1..432 | 17..448 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:02:23 Download gff for
BS09025.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9705-PA | 1..432 | 17..448 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-14 14:56:53 Download gff for
BS09025.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9705-RB | 470..909 | 12..455 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:15 Download gff for
BS09025.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9705-RB | 470..909 | 12..455 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:15 Download gff for
BS09025.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16780653..16780790 | 315..455 | 97 | -> | Minus |
3L | 16781463..16781585 | 192..314 | 100 | -> | Minus |
3L | 16781664..16781842 | 12..191 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-14 14:56:53 Download gff for
BS09025.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16773753..16773890 | 315..455 | 97 | -> | Minus |
arm_3L | 16774563..16774685 | 192..314 | 100 | -> | Minus |
arm_3L | 16774764..16774942 | 12..191 | 99 | | Minus |
BS09025.complete Sequence
464 bp (464 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636339
> BS09025.complete
GAAGTTATCAGTCGACATGACCGAACCAAGGACGCCCGAGAAGCTGCTGG
CCGCCAAGCCGCCGGTTTTACACCACAACAGCCATAGTCCCAATGCCTCG
CTGCAGCTGCCCAGTCCCATCATCACGAGGCGCACTCGCACGGCCTCGAC
CTCCGCTCGGGCCTTGGAAAATCCGGTTGTGACCGGTATGGTGAAATCCT
TCAGCCGCACCAAAGGACACGGCTTCATTACACCCAACGCCGGCGGAGAG
GACGTTTTTTGCCACGTTTCCGACATCGAAGGTGAATATGTGCCCATGCC
CGGGGACGAGGTCAAATACCGTCTGTGCGCCATTCCGCCCAAGTATGAGA
AGCACCAGGCCGTGCACGTGCAGATTAGCCACCTGACGCCGGAGGTGCAC
CACAAGTGGGAGGAGCCATTCTATGGTGGCTCCTCGCCCGCTAAGTAAAA
GCTTTCTAGACCAT
BS09025.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:50:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9705-RC | 432 | CG9705-PC | 1..432 | 17..448 | 2160 | 100 | Plus |
CG9705-RA | 432 | CG9705-PA | 1..432 | 17..448 | 2160 | 100 | Plus |
CG9705-RB | 432 | CG9705-PB | 1..432 | 17..448 | 2160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:50:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9705-RC | 1035 | CG9705-RC | 22..455 | 16..449 | 2170 | 100 | Plus |
CG9705-RA | 1570 | CG9705-RA | 557..990 | 16..449 | 2170 | 100 | Plus |
CG9705-RB | 1486 | CG9705-RB | 473..906 | 16..449 | 2170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:50:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16781664..16781839 | 274..449 | 880 | 100 | Plus |
3L | 28110227 | 3L | 16780656..16780790 | 16..150 | 675 | 100 | Plus |
3L | 28110227 | 3L | 16781463..16781585 | 151..273 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:50:18 has no hits.
BS09025.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:52 Download gff for
BS09025.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9705-RA | 1..432 | 17..448 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:15:58 Download gff for
BS09025.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9705-RA | 543..982 | 10..453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:00 Download gff for
BS09025.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9705-RB | 474..903 | 17..446 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:53 Download gff for
BS09025.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9705-RA | 543..982 | 10..453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:18 Download gff for
BS09025.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9705-RB | 474..903 | 17..446 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:18 Download gff for
BS09025.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16780657..16780790 | 17..150 | 100 | -> | Plus |
3L | 16781463..16781585 | 151..273 | 100 | -> | Plus |
3L | 16781664..16781836 | 274..446 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:00 Download gff for
BS09025.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16773757..16773890 | 17..150 | 100 | -> | Plus |
arm_3L | 16774563..16774685 | 151..273 | 100 | -> | Plus |
arm_3L | 16774764..16774936 | 274..446 | 100 | | Plus |
BS09025.pep Sequence
Translation from 16 to 447
> BS09025.pep
MTEPRTPEKLLAAKPPVLHHNSHSPNASLQLPSPIITRRTRTASTSARAL
ENPVVTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDIEGEYVPMPGDEVK
YRLCAIPPKYEKHQAVHVQISHLTPEVHHKWEEPFYGGSSPAK*
BS09025.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:40:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9705-PC | 143 | CG9705-PC | 1..143 | 1..143 | 772 | 100 | Plus |
CG9705-PA | 143 | CG9705-PA | 1..143 | 1..143 | 772 | 100 | Plus |
CG9705-PB | 143 | CG9705-PB | 1..143 | 1..143 | 772 | 100 | Plus |