Clone BS09025 Report

Search the DGRC for BS09025

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:90
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptCG9705-RA
Protein status:BS09025.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09025.5prime Sequence

462 bp (461 high quality bases) assembled on 2006-01-24

> BS09025.5prime
GAAGTTATCAGTCGACATGACCGAACCAAGGACGCCCGAGAAGCTGCTGG
CCGCCAAGCCGCCGGTTTTACACCACAACAGCCATAGTCCCAATGCCTCG
CTGCAGCTGCCCAGTCCCATCATCACGAGGCGCACTCGCACGGCCTCGAC
CTCCGCTCGGGCCTTGGAAAATCCGGTTGTGACCGGTATGGTGAAATCCT
TCAGCCGCACCAAAGGACACGGCTTCATTACACCCAACGCCGGCGGAGAG
GACGTTTTTTGCCACGTTTCCGACATCGAAGGTGAATATGTGCCCATGCC
CGGGGACGAGGTCAAATACCGTCTGTGCGCCATTCCGCCCAAGTATGAGA
AGCACCAGGCCGTGCACGTGCAGATTAGCCACCTGACGCCGGAGGTGCAC
CACAAGTGGGAGGAGCCATTCTATGGTGGCTCCTCGCCCGCTAAGTAAAA
GCTTTCTAGACC

BS09025.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG9705-PB 432 CG9705-RB 1..432 17..448 2160 100 Plus
CG9705-PA 432 CG9705-RA 1..432 17..448 2160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:46:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG9705-RC 1035 CG9705-RC 22..455 16..449 2170 100 Plus
CG9705-RA 1570 CG9705-RA 557..990 16..449 2170 100 Plus
CG9705-RB 1486 CG9705-RB 473..906 16..449 2170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:46:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16781664..16781839 274..449 880 100 Plus
3L 28110227 3L 16780656..16780790 16..150 675 100 Plus
3L 28110227 3L 16781463..16781585 151..273 615 100 Plus
Blast to na_te.dros performed on 2015-02-12 13:46:53 has no hits.

BS09025.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:57:00 Download gff for BS09025.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9705-PB 1..432 17..448 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:02:25 Download gff for BS09025.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9705-PA 1..432 17..448 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 12:36:22 Download gff for BS09025.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9705-RB 470..909 10..453 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:06:20 Download gff for BS09025.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9705-RB 470..909 10..453 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:06:20 Download gff for BS09025.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16780653..16780790 10..150 97 -> Plus
3L 16781463..16781585 151..273 100 -> Plus
3L 16781664..16781842 274..453 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 12:36:22 Download gff for BS09025.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16773753..16773890 10..150 97 -> Plus
arm_3L 16774563..16774685 151..273 100 -> Plus
arm_3L 16774764..16774942 274..453 99   Plus

BS09025.3prime Sequence

462 bp (461 high quality bases) assembled on 2006-01-24

> BS09025.3prime
ATGGTCTAGAAAGCTTTTACTTAGCGGGCGAGGAGCCACCATAGAATGGC
TCCTCCCACTTGTGGTGCACCTCCGGCGTCAGGTGGCTAATCTGCACGTG
CACGGCCTGGTGCTTCTCATACTTGGGCGGAATGGCGCACAGACGGTATT
TGACCTCGTCCCCGGGCATGGGCACATATTCACCTTCGATGTCGGAAACG
TGGCAAAAAACGTCCTCTCCGCCGGCGTTGGGTGTAATGAAGCCGTGTCC
TTTGGTGCGGCTGAAGGATTTCACCATACCGGTCACAACCGGATTTTCCA
AGGCCCGAGCGGAGGTCGAGGCCGTGCGAGTGCGCCTCGTGATGATGGGA
CTGGGCAGCTGCAGCGAGGCATTGGGACTATGGCTGTTGTGGTGTAAAAC
CGGCGGCTTGGCGGCCAGCAGCTTCTCGGGCGTCCTTGGTTCGGTCATGT
CGACTGATAACT

BS09025.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG9705-PB 432 CG9705-RB 1..432 448..17 2160 100 Minus
CG9705-PA 432 CG9705-RA 1..432 448..17 2160 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:45:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9705-RC 1035 CG9705-RC 22..455 449..16 2170 100 Minus
CG9705-RA 1570 CG9705-RA 557..990 449..16 2170 100 Minus
CG9705-RB 1486 CG9705-RB 473..906 449..16 2170 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16781664..16781839 191..16 880 100 Minus
3L 28110227 3L 16780656..16780790 449..315 675 100 Minus
3L 28110227 3L 16781463..16781585 314..192 615 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:45:22 has no hits.

BS09025.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:56:59 Download gff for BS09025.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9705-PB 1..432 17..448 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:02:23 Download gff for BS09025.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9705-PA 1..432 17..448 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-14 14:56:53 Download gff for BS09025.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9705-RB 470..909 12..455 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:15 Download gff for BS09025.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9705-RB 470..909 12..455 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:15 Download gff for BS09025.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16780653..16780790 315..455 97 -> Minus
3L 16781463..16781585 192..314 100 -> Minus
3L 16781664..16781842 12..191 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-14 14:56:53 Download gff for BS09025.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16773753..16773890 315..455 97 -> Minus
arm_3L 16774563..16774685 192..314 100 -> Minus
arm_3L 16774764..16774942 12..191 99   Minus

BS09025.complete Sequence

464 bp (464 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636339

> BS09025.complete
GAAGTTATCAGTCGACATGACCGAACCAAGGACGCCCGAGAAGCTGCTGG
CCGCCAAGCCGCCGGTTTTACACCACAACAGCCATAGTCCCAATGCCTCG
CTGCAGCTGCCCAGTCCCATCATCACGAGGCGCACTCGCACGGCCTCGAC
CTCCGCTCGGGCCTTGGAAAATCCGGTTGTGACCGGTATGGTGAAATCCT
TCAGCCGCACCAAAGGACACGGCTTCATTACACCCAACGCCGGCGGAGAG
GACGTTTTTTGCCACGTTTCCGACATCGAAGGTGAATATGTGCCCATGCC
CGGGGACGAGGTCAAATACCGTCTGTGCGCCATTCCGCCCAAGTATGAGA
AGCACCAGGCCGTGCACGTGCAGATTAGCCACCTGACGCCGGAGGTGCAC
CACAAGTGGGAGGAGCCATTCTATGGTGGCTCCTCGCCCGCTAAGTAAAA
GCTTTCTAGACCAT

BS09025.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG9705-RC 432 CG9705-PC 1..432 17..448 2160 100 Plus
CG9705-RA 432 CG9705-PA 1..432 17..448 2160 100 Plus
CG9705-RB 432 CG9705-PB 1..432 17..448 2160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG9705-RC 1035 CG9705-RC 22..455 16..449 2170 100 Plus
CG9705-RA 1570 CG9705-RA 557..990 16..449 2170 100 Plus
CG9705-RB 1486 CG9705-RB 473..906 16..449 2170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:50:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16781664..16781839 274..449 880 100 Plus
3L 28110227 3L 16780656..16780790 16..150 675 100 Plus
3L 28110227 3L 16781463..16781585 151..273 615 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:50:18 has no hits.

BS09025.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:52 Download gff for BS09025.complete
Subject Subject Range Query Range Percent Splice Strand
CG9705-RA 1..432 17..448 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:15:58 Download gff for BS09025.complete
Subject Subject Range Query Range Percent Splice Strand
CG9705-RA 543..982 10..453 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:00 Download gff for BS09025.complete
Subject Subject Range Query Range Percent Splice Strand
CG9705-RB 474..903 17..446 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:53 Download gff for BS09025.complete
Subject Subject Range Query Range Percent Splice Strand
CG9705-RA 543..982 10..453 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:18 Download gff for BS09025.complete
Subject Subject Range Query Range Percent Splice Strand
CG9705-RB 474..903 17..446 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:18 Download gff for BS09025.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16780657..16780790 17..150 100 -> Plus
3L 16781463..16781585 151..273 100 -> Plus
3L 16781664..16781836 274..446 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:00 Download gff for BS09025.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16773757..16773890 17..150 100 -> Plus
arm_3L 16774563..16774685 151..273 100 -> Plus
arm_3L 16774764..16774936 274..446 100   Plus

BS09025.pep Sequence

Translation from 16 to 447

> BS09025.pep
MTEPRTPEKLLAAKPPVLHHNSHSPNASLQLPSPIITRRTRTASTSARAL
ENPVVTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDIEGEYVPMPGDEVK
YRLCAIPPKYEKHQAVHVQISHLTPEVHHKWEEPFYGGSSPAK*

BS09025.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG9705-PC 143 CG9705-PC 1..143 1..143 772 100 Plus
CG9705-PA 143 CG9705-PA 1..143 1..143 772 100 Plus
CG9705-PB 143 CG9705-PB 1..143 1..143 772 100 Plus