Clone BS09030 Report

Search the DGRC for BS09030

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:90
Well:30
Vector:pDNR-Dual
Associated Gene/Transcriptdgt5-RA
Protein status:BS09030.pep: full length peptide match
Sequenced Size:2090

Clone Sequence Records

BS09030.3prime Sequence

953 bp (814 high quality bases) assembled on 2006-01-24

> BS09030.3prime
ATGGTCTAGAAAGCTTTTAATTAGGTGGCGCTCGCATCGAACTTCCATTG
GTGGTCATGCGATAGTAGAGATTGAATTCGGACTCGTAGTCCGCGAAACT
GCCATTGTTGTATCGTTTACTGGGTGGAACGTAGCGTCGCAATGGATTCT
CAAGCAGGAACTGATAGATGCGCTCGGCCTTTTCCAGCTGCAACTGAGTC
TTCACCCCAATGGCCATCAGGTTGTCCAGCAATTGGTCAATTTCCTCGTG
CTGACGACTCGCCTTCAGTCTCAAATCGTGCGGATCAACAATTAACGGCT
GCAAATTCAATTTCAACTCAGACGTGTGTGCGGCAATTGCTGACGCCCAC
AAAATGCGTTTTCGGACTTCCTGCAGAGCGCCGAAGGGTGTTAGCAAATA
GCCTGGTGCCAGTTGAACGGTGGAGGCCAACTCCTGGGCCTCGACGATGA
GTGGATTGGCCGACAACAGGAAGGAGCAGGCGCGCGGCGTACAGCTAAAT
TTTTCCAGCGGTATTTCCAAAAATGTATTGAATTCCAGCAAATGCGATGG
TAGCGTGGCTCCGGATGCAGCCATCAGTGTGGTAGATGCTGCTCCGCCCG
GCACTAGCGTTTTGTTGTCAAAACTGCGACGCATCGTTGAGTTTATTGCG
CTGCAGTTGCCATCGAACTCCACCTTGGTGCTGGAGAACACACTATCATT
GGCCAGGCAAAAACTCTCCGCACCCAACATGGACATATTGCTGACTTTTA
GCTTAGTGCTCATCAGCTGGGACTTGGCGTTTTGTTTCTGTGTGGCCGCT
TGCATATCGTCCAGCAGGTTCTTCATCATATTTCGCGAAAACAGGATCTT
CTCCTTGATCTGTGACAGCTGCACCATATCTTGCTGGATGCGATTGATGC
TGGAGTTAATGTCGCCGTATACTTGTTTCACAGAGCCTAGCTTTAGATCG
TGA

BS09030.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8828-PA 2058 CG8828-RA 1122..2058 953..17 4685 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:13:59
Subject Length Description Subject Range Query Range Score Percent Strand
dgt5-RB 2213 CG8828-RB 1202..2138 953..17 4685 100 Minus
dgt5-RA 2300 CG8828-RA 1289..2225 953..17 4685 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:13:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12466345..12466821 477..953 2385 100 Plus
2R 25286936 2R 12465753..12466025 17..289 1365 100 Plus
2R 25286936 2R 12466091..12466279 289..477 945 100 Plus
Blast to na_te.dros performed on 2015-02-06 10:13:56 has no hits.

BS09030.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:57:09 Download gff for BS09030.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8828-PA 1123..2058 17..952 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:02:39 Download gff for BS09030.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8828-PA 1123..2058 17..952 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:25:42 Download gff for BS09030.3prime
Subject Subject Range Query Range Percent Splice Strand
dgt5-RA 1290..2225 17..952 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:36:10 Download gff for BS09030.3prime
Subject Subject Range Query Range Percent Splice Strand
dgt5-RA 1290..2225 17..952 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:36:10 Download gff for BS09030.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12465753..12466024 17..288 100 <- Plus
2R 12466091..12466278 289..476 100 <- Plus
2R 12466345..12466820 477..952 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:25:42 Download gff for BS09030.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8353258..8353529 17..288 100 <- Plus
arm_2R 8353596..8353783 289..476 100 <- Plus
arm_2R 8353850..8354325 477..952 100   Plus

BS09030.5prime Sequence

884 bp (876 high quality bases) assembled on 2006-01-24

> BS09030.5prime
GAAGTTATCAGTCGACATGGCATACCAGGAGAAAATAACAGAATTTAAGA
ACTGGGCCACTAATCTTGGCTGCCCGCCCACTGCCCTGCCCACCGATGAT
GCACTCCGAAGAATTTTTAAGTCCGGCTCCAGTTTACTTTTGAACCAGCT
GCAATCCCGCATCCAGCCGGTGGATTACGTGCGGGAGGTGCGCGAGAACC
TGCTGATTGCCCAAGTGGCTCGCTACAAGGACAAAATGGTGCCGCTGGCC
TCTAGGAGTTTCCAGCCACCGGAGCTCCAGAGGTACCAAAAAATACAGGA
GCTAAAGAAGCACAAGGAGAAGGCGAACCAACAGCTTACGGAGGCCCGAA
AAGAGTACCAAAAGCTATCTGCCGGCATCAAGACCAAGAACATTCAAACC
ATCAGTGCTGAGAACCGGAAGCAACTACTTGAATCCAAATGCAATATCCT
TGACCTGAAGCTGGAGTCGCTGAATAAGAACTACGACCAGGAGTTGAAGA
ACAAGATCCAAATCTTGGGCACCACGCCCGTGAAGCTGAGTGCTAGAAAT
GCCAGCGAGGCGCAGGCAACAAGGGCTGTGGAGCAGGCTCTCAAGCAGCT
GGAGACCTTCTATGGAATGTGTGACGATGGCAATGCGGTGAACAATTTAG
CCGAGGCCAAGCAGCGATTATGGGATCAGATGCGGAGCACCTTTGCGGAT
ATTCCCAACTCCCTGCTTCTGAACGTGGTAATGAAGATCAAAGAGGAGCA
GCTGCAGCACATCATGAAGCTGAATGAATCCAGAGGCGAATGCACAAATG
ATAAGCCACCGCTGAATAACTATGAGGTCAAGTTACTAAAGACCAAGGCC
GATATGCTGGGTCTGGCGGCCAAATATTTCGCGG

BS09030.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8828-PA 2058 CG8828-RA 1..868 17..884 4340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
dgt5-RB 2213 CG8828-RB 80..948 16..884 4345 100 Plus
dgt5-RA 2300 CG8828-RA 167..1035 16..884 4345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12467075..12467569 884..390 2475 100 Minus
2R 25286936 2R 12467633..12467912 389..110 1400 100 Minus
2R 25286936 2R 12467978..12468073 111..16 480 100 Minus
Blast to na_te.dros performed 2015-02-12 04:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
Doc3-element 4740 Doc3-element DOC3 4740bp 1224..1384 447..606 136 57.3 Plus

BS09030.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:57:11 Download gff for BS09030.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8828-PA 1..868 17..884 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:02:41 Download gff for BS09030.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8828-PA 1..868 17..884 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:53:14 Download gff for BS09030.5prime
Subject Subject Range Query Range Percent Splice Strand
dgt5-RA 167..1035 16..884 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:10 Download gff for BS09030.5prime
Subject Subject Range Query Range Percent Splice Strand
dgt5-RA 167..1035 16..884 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:10 Download gff for BS09030.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12467075..12467569 390..884 100 <- Minus
2R 12467633..12467910 112..389 100 <- Minus
2R 12467978..12468073 16..111 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:53:14 Download gff for BS09030.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8354580..8355074 390..884 100 <- Minus
arm_2R 8355138..8355415 112..389 100 <- Minus
arm_2R 8355483..8355578 16..111 100   Minus

BS09030.complete Sequence

2090 bp assembled on 2008-08-14

GenBank Submission: FJ636340

> BS09030.complete
GAAGTTATCAGTCGACATGGCATACCAGGAGAAAATAACAGAATTTAAGA
ACTGGGCCACTAATCTTGGCTGCCCGCCCACTGCCCTGCCCACCGATGAT
GCACTCCGAAGAATTTTTAAGTCCGGCTCCAGTTTACTTTTGAACCAGCT
GCAATCCCGCATCCAGCCGGTGGATTACGTGCGGGAGGTGCGCGAGAACC
TGCTGATTGCCCAAGTGGCTCGCTACAAGGACAAAATGGTGCCGCTGGCC
TCTAGGAGTTTCCAGCCACCGGAGCTCCAGAGGTACCAAAAAATACAGGA
GCTAAAGAAGCACAAGGAGAAGGCGAACCAACAGCTTACGGAGGCCCGAA
AAGAGTACCAAAAGCTATCTGCCGGCATCAAGACCAAGAACATTCAAACC
ATCAGTGCTGAGAACCGGAAGCAACTACTTGAATCCAAATGCAATATCCT
TGACCTGAAGCTGGAGTCGCTGAATAAGAACTACGACCAGGAGTTGAAGA
ACAAGATCCAAATCTTGGGCACCACGCCCGTGAAGCTGAGTGCTAGAAAT
GCCAGCGAGGCGCAGGCAACAAGGGCTGTGGAGCAGGCTCTCAAGCAGCT
GGAGACCTTCTATGGAATGTGTGACGATGGCAATGCGGTGAACAATTTAG
CCGAGGCCAAGCAGCGATTATGGGATCAGATGCGGAGCACCTTTGCGGAT
ATTCCCAACTCCCTGCTTCTGAACGTGGTAATGAAGATCAAAGAGGAGCA
GCTGCAGCACATCATGAAGCTGAATGAATCCAGAGGCGAATGCACAAATG
ATAAGCCACCGCTGAATAACTATGAGGTCAAGTTACTAAAGACCAAGGCC
GATATGCTGGGTCTGGCGGCCAAATATTTCGCGGCCCAAAAGGAGCTGGA
ACTGAAGGAGGAACGCTTTTGCCAAGACTACAGCGTCTTTGTGGACAAAC
TGCAATCAAAGGTATACAGATTTAATGGCATAAGTTTGGGCGACGAGGAA
AATGCGGATGAACTGATTAGCGACTATCTGGTGCAGTACAACATGCGCAA
TTTTAATCGCTCCCAAAACGAATTCCTTCGTGAGCAGATTGAGCAACTGC
GTCTGGAGCTAGATGCGGGCGCCAAGCAGCTGGAGAATCACGATCTAAAG
CTAGGCTCTGTGAAACAAGTATACGGCGACATTAACTCCAGCATCAATCG
CATCCAGCAAGATATGGTGCAGCTGTCACAGATCAAGGAGAAGATCCTGT
TTTCGCGAAATATGATGAAGAACCTGCTGGACGATATGCAAGCGGCCACA
CAGAAACAAAACGCCAAGTCCCAGCTGATGAGCACTAAGCTAAAAGTCAG
CAATATGTCCATGTTGGGTGCGGAGAGTTTTTGCCTGGCCAATGATAGTG
TGTTCTCCAGCACCAAGGTGGAGTTCGATGGCAACTGCAGCGCAATAAAC
TCAACGATGCGTCGCAGTTTTGACAACAAAACGCTAGTGCCGGGCGGAGC
AGCATCTACCACACTGATGGCTGCATCCGGAGCCACGCTACCATCGCATT
TGCTGGAATTCAATACATTTTTGGAAATACCGCTGGAAAAATTTAGCTGT
ACGCCGCGCGCCTGCTCCTTCCTGTTGTCGGCCAATCCACTCATCGTCGA
GGCCCAGGAGTTGGCCTCCACCGTTCAACTGGCACCAGGCTATTTGCTAA
CACCCTTCGGCGCTCTGCAGGAAGTCCGAAAACGCATTTTGTGGGCGTCA
GCAATTGCCGCACACACGTCTGAGTTGAAATTGAATTTGCAGCCGTTAAT
TGTTGATCCGCACGATTTGAGACTGAAGGCGAGTCGTCAGCACGAGGAAA
TTGACCAATTGCTGGACAACCTGATGGCCATTGGGGTGAAGACTCAGTTG
CAGCTGGAAAAGGCCGAGCGCATCTATCAGTTCCTGCTTGAGAATCCATT
GCGACGCTACGTTCCACCCAGTAAACGATACAACAATGGCAGTTTCGCGG
ACTACGAGTCCGAATTCAATCTCTACTATCGCATGACCACCAATGGAAGT
TCGATGCGAGCGCCACCTAATTAAAAGCTTTCTAGACCAT

BS09030.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:33:38
Subject Length Description Subject Range Query Range Score Percent Strand
dgt5-RB 2058 CG8828-PB 1..2058 17..2074 10290 100 Plus
dgt5-RA 2058 CG8828-PA 1..2058 17..2074 10290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:33:39
Subject Length Description Subject Range Query Range Score Percent Strand
dgt5-RB 2213 CG8828-RB 80..2138 16..2074 10295 100 Plus
dgt5-RA 2300 CG8828-RA 167..2225 16..2074 10295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12466345..12467569 1614..390 6125 100 Minus
2R 25286936 2R 12467633..12467912 389..110 1400 100 Minus
2R 25286936 2R 12465753..12466025 2074..1802 1365 100 Minus
2R 25286936 2R 12466091..12466279 1802..1614 945 100 Minus
2R 25286936 2R 12467978..12468073 111..16 480 100 Minus
Blast to na_te.dros performed 2014-11-28 00:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
rooA 7621 rooA ROOA_LTR 7621bp 3303..3402 907..1006 122 60.8 Plus

BS09030.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:45:52 Download gff for BS09030.complete
Subject Subject Range Query Range Percent Splice Strand
dgt5-RA 167..2225 16..2074 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:00 Download gff for BS09030.complete
Subject Subject Range Query Range Percent Splice Strand
dgt5-RA 168..2223 17..2072 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:09 Download gff for BS09030.complete
Subject Subject Range Query Range Percent Splice Strand
dgt5-RA 168..2223 17..2072 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:59 Download gff for BS09030.complete
Subject Subject Range Query Range Percent Splice Strand
dgt5-RA 168..2223 17..2072 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:59 Download gff for BS09030.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12467633..12467910 112..389 100 <- Minus
2R 12467978..12468072 17..111 100   Minus
2R 12465755..12466024 1803..2072 100 <- Minus
2R 12466091..12466278 1615..1802 100 <- Minus
2R 12466345..12467569 390..1614 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:00 Download gff for BS09030.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8353260..8353529 1803..2072 100 <- Minus
arm_2R 8353596..8353783 1615..1802 100 <- Minus
arm_2R 8353850..8355074 390..1614 100 <- Minus
arm_2R 8355138..8355415 112..389 100 <- Minus
arm_2R 8355483..8355577 17..111 100   Minus

BS09030.pep Sequence

Translation from 16 to 2073

> BS09030.pep
MAYQEKITEFKNWATNLGCPPTALPTDDALRRIFKSGSSLLLNQLQSRIQ
PVDYVREVRENLLIAQVARYKDKMVPLASRSFQPPELQRYQKIQELKKHK
EKANQQLTEARKEYQKLSAGIKTKNIQTISAENRKQLLESKCNILDLKLE
SLNKNYDQELKNKIQILGTTPVKLSARNASEAQATRAVEQALKQLETFYG
MCDDGNAVNNLAEAKQRLWDQMRSTFADIPNSLLLNVVMKIKEEQLQHIM
KLNESRGECTNDKPPLNNYEVKLLKTKADMLGLAAKYFAAQKELELKEER
FCQDYSVFVDKLQSKVYRFNGISLGDEENADELISDYLVQYNMRNFNRSQ
NEFLREQIEQLRLELDAGAKQLENHDLKLGSVKQVYGDINSSINRIQQDM
VQLSQIKEKILFSRNMMKNLLDDMQAATQKQNAKSQLMSTKLKVSNMSML
GAESFCLANDSVFSSTKVEFDGNCSAINSTMRRSFDNKTLVPGGAASTTL
MAASGATLPSHLLEFNTFLEIPLEKFSCTPRACSFLLSANPLIVEAQELA
STVQLAPGYLLTPFGALQEVRKRILWASAIAAHTSELKLNLQPLIVDPHD
LRLKASRQHEEIDQLLDNLMAIGVKTQLQLEKAERIYQFLLENPLRRYVP
PSKRYNNGSFADYESEFNLYYRMTTNGSSMRAPPN*

BS09030.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:12:51
Subject Length Description Subject Range Query Range Score Percent Strand
dgt5-PB 685 CG8828-PB 1..685 1..685 3464 100 Plus
dgt5-PA 685 CG8828-PA 1..685 1..685 3464 100 Plus