Clone Sequence Records
BS09030.3prime Sequence
953 bp (814 high quality bases) assembled on 2006-01-24
> BS09030.3prime
ATGGTCTAGAAAGCTTTTAATTAGGTGGCGCTCGCATCGAACTTCCATTG
GTGGTCATGCGATAGTAGAGATTGAATTCGGACTCGTAGTCCGCGAAACT
GCCATTGTTGTATCGTTTACTGGGTGGAACGTAGCGTCGCAATGGATTCT
CAAGCAGGAACTGATAGATGCGCTCGGCCTTTTCCAGCTGCAACTGAGTC
TTCACCCCAATGGCCATCAGGTTGTCCAGCAATTGGTCAATTTCCTCGTG
CTGACGACTCGCCTTCAGTCTCAAATCGTGCGGATCAACAATTAACGGCT
GCAAATTCAATTTCAACTCAGACGTGTGTGCGGCAATTGCTGACGCCCAC
AAAATGCGTTTTCGGACTTCCTGCAGAGCGCCGAAGGGTGTTAGCAAATA
GCCTGGTGCCAGTTGAACGGTGGAGGCCAACTCCTGGGCCTCGACGATGA
GTGGATTGGCCGACAACAGGAAGGAGCAGGCGCGCGGCGTACAGCTAAAT
TTTTCCAGCGGTATTTCCAAAAATGTATTGAATTCCAGCAAATGCGATGG
TAGCGTGGCTCCGGATGCAGCCATCAGTGTGGTAGATGCTGCTCCGCCCG
GCACTAGCGTTTTGTTGTCAAAACTGCGACGCATCGTTGAGTTTATTGCG
CTGCAGTTGCCATCGAACTCCACCTTGGTGCTGGAGAACACACTATCATT
GGCCAGGCAAAAACTCTCCGCACCCAACATGGACATATTGCTGACTTTTA
GCTTAGTGCTCATCAGCTGGGACTTGGCGTTTTGTTTCTGTGTGGCCGCT
TGCATATCGTCCAGCAGGTTCTTCATCATATTTCGCGAAAACAGGATCTT
CTCCTTGATCTGTGACAGCTGCACCATATCTTGCTGGATGCGATTGATGC
TGGAGTTAATGTCGCCGTATACTTGTTTCACAGAGCCTAGCTTTAGATCG
TGA
BS09030.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8828-PA | 2058 | CG8828-RA | 1122..2058 | 953..17 | 4685 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:13:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dgt5-RB | 2213 | CG8828-RB | 1202..2138 | 953..17 | 4685 | 100 | Minus |
dgt5-RA | 2300 | CG8828-RA | 1289..2225 | 953..17 | 4685 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:13:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12466345..12466821 | 477..953 | 2385 | 100 | Plus |
2R | 25286936 | 2R | 12465753..12466025 | 17..289 | 1365 | 100 | Plus |
2R | 25286936 | 2R | 12466091..12466279 | 289..477 | 945 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:13:56 has no hits.
BS09030.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:57:09 Download gff for
BS09030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8828-PA | 1123..2058 | 17..952 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:02:39 Download gff for
BS09030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8828-PA | 1123..2058 | 17..952 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:25:42 Download gff for
BS09030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgt5-RA | 1290..2225 | 17..952 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:36:10 Download gff for
BS09030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgt5-RA | 1290..2225 | 17..952 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:36:10 Download gff for
BS09030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12465753..12466024 | 17..288 | 100 | <- | Plus |
2R | 12466091..12466278 | 289..476 | 100 | <- | Plus |
2R | 12466345..12466820 | 477..952 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:25:42 Download gff for
BS09030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8353258..8353529 | 17..288 | 100 | <- | Plus |
arm_2R | 8353596..8353783 | 289..476 | 100 | <- | Plus |
arm_2R | 8353850..8354325 | 477..952 | 100 | | Plus |
BS09030.5prime Sequence
884 bp (876 high quality bases) assembled on 2006-01-24
> BS09030.5prime
GAAGTTATCAGTCGACATGGCATACCAGGAGAAAATAACAGAATTTAAGA
ACTGGGCCACTAATCTTGGCTGCCCGCCCACTGCCCTGCCCACCGATGAT
GCACTCCGAAGAATTTTTAAGTCCGGCTCCAGTTTACTTTTGAACCAGCT
GCAATCCCGCATCCAGCCGGTGGATTACGTGCGGGAGGTGCGCGAGAACC
TGCTGATTGCCCAAGTGGCTCGCTACAAGGACAAAATGGTGCCGCTGGCC
TCTAGGAGTTTCCAGCCACCGGAGCTCCAGAGGTACCAAAAAATACAGGA
GCTAAAGAAGCACAAGGAGAAGGCGAACCAACAGCTTACGGAGGCCCGAA
AAGAGTACCAAAAGCTATCTGCCGGCATCAAGACCAAGAACATTCAAACC
ATCAGTGCTGAGAACCGGAAGCAACTACTTGAATCCAAATGCAATATCCT
TGACCTGAAGCTGGAGTCGCTGAATAAGAACTACGACCAGGAGTTGAAGA
ACAAGATCCAAATCTTGGGCACCACGCCCGTGAAGCTGAGTGCTAGAAAT
GCCAGCGAGGCGCAGGCAACAAGGGCTGTGGAGCAGGCTCTCAAGCAGCT
GGAGACCTTCTATGGAATGTGTGACGATGGCAATGCGGTGAACAATTTAG
CCGAGGCCAAGCAGCGATTATGGGATCAGATGCGGAGCACCTTTGCGGAT
ATTCCCAACTCCCTGCTTCTGAACGTGGTAATGAAGATCAAAGAGGAGCA
GCTGCAGCACATCATGAAGCTGAATGAATCCAGAGGCGAATGCACAAATG
ATAAGCCACCGCTGAATAACTATGAGGTCAAGTTACTAAAGACCAAGGCC
GATATGCTGGGTCTGGCGGCCAAATATTTCGCGG
BS09030.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8828-PA | 2058 | CG8828-RA | 1..868 | 17..884 | 4340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:56:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dgt5-RB | 2213 | CG8828-RB | 80..948 | 16..884 | 4345 | 100 | Plus |
dgt5-RA | 2300 | CG8828-RA | 167..1035 | 16..884 | 4345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:56:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12467075..12467569 | 884..390 | 2475 | 100 | Minus |
2R | 25286936 | 2R | 12467633..12467912 | 389..110 | 1400 | 100 | Minus |
2R | 25286936 | 2R | 12467978..12468073 | 111..16 | 480 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 04:56:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 1224..1384 | 447..606 | 136 | 57.3 | Plus |
BS09030.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:57:11 Download gff for
BS09030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8828-PA | 1..868 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:02:41 Download gff for
BS09030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8828-PA | 1..868 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:53:14 Download gff for
BS09030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgt5-RA | 167..1035 | 16..884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:10 Download gff for
BS09030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgt5-RA | 167..1035 | 16..884 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:10 Download gff for
BS09030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12467075..12467569 | 390..884 | 100 | <- | Minus |
2R | 12467633..12467910 | 112..389 | 100 | <- | Minus |
2R | 12467978..12468073 | 16..111 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:53:14 Download gff for
BS09030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8354580..8355074 | 390..884 | 100 | <- | Minus |
arm_2R | 8355138..8355415 | 112..389 | 100 | <- | Minus |
arm_2R | 8355483..8355578 | 16..111 | 100 | | Minus |
BS09030.complete Sequence
2090 bp assembled on 2008-08-14
GenBank Submission: FJ636340
> BS09030.complete
GAAGTTATCAGTCGACATGGCATACCAGGAGAAAATAACAGAATTTAAGA
ACTGGGCCACTAATCTTGGCTGCCCGCCCACTGCCCTGCCCACCGATGAT
GCACTCCGAAGAATTTTTAAGTCCGGCTCCAGTTTACTTTTGAACCAGCT
GCAATCCCGCATCCAGCCGGTGGATTACGTGCGGGAGGTGCGCGAGAACC
TGCTGATTGCCCAAGTGGCTCGCTACAAGGACAAAATGGTGCCGCTGGCC
TCTAGGAGTTTCCAGCCACCGGAGCTCCAGAGGTACCAAAAAATACAGGA
GCTAAAGAAGCACAAGGAGAAGGCGAACCAACAGCTTACGGAGGCCCGAA
AAGAGTACCAAAAGCTATCTGCCGGCATCAAGACCAAGAACATTCAAACC
ATCAGTGCTGAGAACCGGAAGCAACTACTTGAATCCAAATGCAATATCCT
TGACCTGAAGCTGGAGTCGCTGAATAAGAACTACGACCAGGAGTTGAAGA
ACAAGATCCAAATCTTGGGCACCACGCCCGTGAAGCTGAGTGCTAGAAAT
GCCAGCGAGGCGCAGGCAACAAGGGCTGTGGAGCAGGCTCTCAAGCAGCT
GGAGACCTTCTATGGAATGTGTGACGATGGCAATGCGGTGAACAATTTAG
CCGAGGCCAAGCAGCGATTATGGGATCAGATGCGGAGCACCTTTGCGGAT
ATTCCCAACTCCCTGCTTCTGAACGTGGTAATGAAGATCAAAGAGGAGCA
GCTGCAGCACATCATGAAGCTGAATGAATCCAGAGGCGAATGCACAAATG
ATAAGCCACCGCTGAATAACTATGAGGTCAAGTTACTAAAGACCAAGGCC
GATATGCTGGGTCTGGCGGCCAAATATTTCGCGGCCCAAAAGGAGCTGGA
ACTGAAGGAGGAACGCTTTTGCCAAGACTACAGCGTCTTTGTGGACAAAC
TGCAATCAAAGGTATACAGATTTAATGGCATAAGTTTGGGCGACGAGGAA
AATGCGGATGAACTGATTAGCGACTATCTGGTGCAGTACAACATGCGCAA
TTTTAATCGCTCCCAAAACGAATTCCTTCGTGAGCAGATTGAGCAACTGC
GTCTGGAGCTAGATGCGGGCGCCAAGCAGCTGGAGAATCACGATCTAAAG
CTAGGCTCTGTGAAACAAGTATACGGCGACATTAACTCCAGCATCAATCG
CATCCAGCAAGATATGGTGCAGCTGTCACAGATCAAGGAGAAGATCCTGT
TTTCGCGAAATATGATGAAGAACCTGCTGGACGATATGCAAGCGGCCACA
CAGAAACAAAACGCCAAGTCCCAGCTGATGAGCACTAAGCTAAAAGTCAG
CAATATGTCCATGTTGGGTGCGGAGAGTTTTTGCCTGGCCAATGATAGTG
TGTTCTCCAGCACCAAGGTGGAGTTCGATGGCAACTGCAGCGCAATAAAC
TCAACGATGCGTCGCAGTTTTGACAACAAAACGCTAGTGCCGGGCGGAGC
AGCATCTACCACACTGATGGCTGCATCCGGAGCCACGCTACCATCGCATT
TGCTGGAATTCAATACATTTTTGGAAATACCGCTGGAAAAATTTAGCTGT
ACGCCGCGCGCCTGCTCCTTCCTGTTGTCGGCCAATCCACTCATCGTCGA
GGCCCAGGAGTTGGCCTCCACCGTTCAACTGGCACCAGGCTATTTGCTAA
CACCCTTCGGCGCTCTGCAGGAAGTCCGAAAACGCATTTTGTGGGCGTCA
GCAATTGCCGCACACACGTCTGAGTTGAAATTGAATTTGCAGCCGTTAAT
TGTTGATCCGCACGATTTGAGACTGAAGGCGAGTCGTCAGCACGAGGAAA
TTGACCAATTGCTGGACAACCTGATGGCCATTGGGGTGAAGACTCAGTTG
CAGCTGGAAAAGGCCGAGCGCATCTATCAGTTCCTGCTTGAGAATCCATT
GCGACGCTACGTTCCACCCAGTAAACGATACAACAATGGCAGTTTCGCGG
ACTACGAGTCCGAATTCAATCTCTACTATCGCATGACCACCAATGGAAGT
TCGATGCGAGCGCCACCTAATTAAAAGCTTTCTAGACCAT
BS09030.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:33:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dgt5-RB | 2058 | CG8828-PB | 1..2058 | 17..2074 | 10290 | 100 | Plus |
dgt5-RA | 2058 | CG8828-PA | 1..2058 | 17..2074 | 10290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:33:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dgt5-RB | 2213 | CG8828-RB | 80..2138 | 16..2074 | 10295 | 100 | Plus |
dgt5-RA | 2300 | CG8828-RA | 167..2225 | 16..2074 | 10295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:33:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12466345..12467569 | 1614..390 | 6125 | 100 | Minus |
2R | 25286936 | 2R | 12467633..12467912 | 389..110 | 1400 | 100 | Minus |
2R | 25286936 | 2R | 12465753..12466025 | 2074..1802 | 1365 | 100 | Minus |
2R | 25286936 | 2R | 12466091..12466279 | 1802..1614 | 945 | 100 | Minus |
2R | 25286936 | 2R | 12467978..12468073 | 111..16 | 480 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:33:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rooA | 7621 | rooA ROOA_LTR 7621bp | 3303..3402 | 907..1006 | 122 | 60.8 | Plus |
BS09030.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:45:52 Download gff for
BS09030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgt5-RA | 167..2225 | 16..2074 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:00 Download gff for
BS09030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgt5-RA | 168..2223 | 17..2072 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:09 Download gff for
BS09030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgt5-RA | 168..2223 | 17..2072 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:59 Download gff for
BS09030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgt5-RA | 168..2223 | 17..2072 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:59 Download gff for
BS09030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12467633..12467910 | 112..389 | 100 | <- | Minus |
2R | 12467978..12468072 | 17..111 | 100 | | Minus |
2R | 12465755..12466024 | 1803..2072 | 100 | <- | Minus |
2R | 12466091..12466278 | 1615..1802 | 100 | <- | Minus |
2R | 12466345..12467569 | 390..1614 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:00 Download gff for
BS09030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8353260..8353529 | 1803..2072 | 100 | <- | Minus |
arm_2R | 8353596..8353783 | 1615..1802 | 100 | <- | Minus |
arm_2R | 8353850..8355074 | 390..1614 | 100 | <- | Minus |
arm_2R | 8355138..8355415 | 112..389 | 100 | <- | Minus |
arm_2R | 8355483..8355577 | 17..111 | 100 | | Minus |
BS09030.pep Sequence
Translation from 16 to 2073
> BS09030.pep
MAYQEKITEFKNWATNLGCPPTALPTDDALRRIFKSGSSLLLNQLQSRIQ
PVDYVREVRENLLIAQVARYKDKMVPLASRSFQPPELQRYQKIQELKKHK
EKANQQLTEARKEYQKLSAGIKTKNIQTISAENRKQLLESKCNILDLKLE
SLNKNYDQELKNKIQILGTTPVKLSARNASEAQATRAVEQALKQLETFYG
MCDDGNAVNNLAEAKQRLWDQMRSTFADIPNSLLLNVVMKIKEEQLQHIM
KLNESRGECTNDKPPLNNYEVKLLKTKADMLGLAAKYFAAQKELELKEER
FCQDYSVFVDKLQSKVYRFNGISLGDEENADELISDYLVQYNMRNFNRSQ
NEFLREQIEQLRLELDAGAKQLENHDLKLGSVKQVYGDINSSINRIQQDM
VQLSQIKEKILFSRNMMKNLLDDMQAATQKQNAKSQLMSTKLKVSNMSML
GAESFCLANDSVFSSTKVEFDGNCSAINSTMRRSFDNKTLVPGGAASTTL
MAASGATLPSHLLEFNTFLEIPLEKFSCTPRACSFLLSANPLIVEAQELA
STVQLAPGYLLTPFGALQEVRKRILWASAIAAHTSELKLNLQPLIVDPHD
LRLKASRQHEEIDQLLDNLMAIGVKTQLQLEKAERIYQFLLENPLRRYVP
PSKRYNNGSFADYESEFNLYYRMTTNGSSMRAPPN*
BS09030.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:12:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dgt5-PB | 685 | CG8828-PB | 1..685 | 1..685 | 3464 | 100 | Plus |
dgt5-PA | 685 | CG8828-PA | 1..685 | 1..685 | 3464 | 100 | Plus |