Clone Sequence Records
BS09034.3prime Sequence
947 bp (905 high quality bases) assembled on 2006-01-24
> BS09034.3prime
ATGGTCTAGAAAGCTTCTACTCGTTGAGCAGGCAGGTGCGAACAATGGCG
TTGCACACGGCGTAGGGATCACAGTTGGAGCTTGGCCGCCGGTCTTCGAG
GTATCCTTTGCCGGCCGTCGCAACGCCACGCGGCACTCGCACACTTACGG
CCCGGTTGGCCACGCCCCAAGAAAACTTATCGATGCTAGAAGTCTCAAGA
CGTCCCACGAGGCGCCGTTCATTGTCTTTGCCTTCCTTGGGGTCGTATGC
CTTGATGTGCCGCTCGTGGCGCTTGCTCAGCTTCTCGATAGCTTCCTCGA
TGGCCTTGATTCCGCCATCAGCACGCATCTCCTTTGTGGAAAAGTTGGTA
TGCGCGCCGGCTCCGTTCCACTGACCCTCCATCGGTTTGGGGTCAAAGGT
GACCACTACGCCATACTCCTCAGCTATGCGCTGCAAAATATATCGCGACA
CCCATAAATCGTCACATGCCTTAATCCCGGCTGGACCAATTTGGAACTCC
CACTGCGCGGGCATTACCTCGGCATTGGTGCCGGCGAAGTCGATCCCAGC
ATACAGGCAGGCCACGACGTGGGCCTCCACAAGATCGCGAGCGTACACAC
GGTCAGCTCCCACGCCGCAGTAGTAAGGACCTTGTGGGGCTGGGAAACCG
TTCTCCGGCCAGCCGAAGGGACGTCCGTCCACGTCTAATAAAGTGTATTC
TTGCTCAATGCCGAACCAGGGCTCCTGATCGCTAATTAGGTCAATGGCTG
CCTGGAACGCGGCACGCTTGTTGGACGCCGTCGGCTTGCCGTCGGCGCTG
TAGGTGTCGCACAGGACAATTACGTCGTTCTTTCCCGGCTTAAAGGGATC
GCGATATATGGCGCGTGGCTTGAGCGTGGTGTCCGAGTTCTCGCCATGGG
CCTGGTAGGTGGAACTGCCGTCGTACTGCCAATCCGGCAAGTCCTCC
BS09034.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2718-PC | 1200 | Gs1-RC | 270..1200 | 947..17 | 4655 | 100 | Minus |
CG2718-PB | 1200 | Gs1-RB | 270..1200 | 947..17 | 4655 | 100 | Minus |
CG1743-PA | 801 | Gs2-RA | 281..323 | 534..492 | 165 | 95.3 | Minus |
CG1743-PB | 1110 | Gs2-RB | 590..632 | 534..492 | 165 | 95.3 | Minus |
CG1743-PC | 1110 | Gs2-RC | 590..632 | 534..492 | 165 | 95.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:08:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gs1-RD | 1699 | CG2718-RD | 456..1386 | 947..17 | 4655 | 100 | Minus |
Gs1-RB | 2176 | CG2718-RB | 456..1386 | 947..17 | 4655 | 100 | Minus |
Gs1-RC | 2396 | CG2718-RC | 676..1606 | 947..17 | 4655 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:08:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 132752..133682 | 947..17 | 4655 | 100 | Minus |
X | 23542271 | X | 11428742..11428856 | 726..612 | 215 | 79.1 | Minus |
X | 23542271 | X | 11428985..11429088 | 595..492 | 205 | 79.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:08:48 has no hits.
BS09034.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:57:15 Download gff for
BS09034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1-PC | 270..1200 | 17..947 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:02:48 Download gff for
BS09034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2718-PB | 270..1200 | 17..947 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:04:57 Download gff for
BS09034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1-RC | 676..1614 | 6..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:11:48 Download gff for
BS09034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1-RC | 676..1614 | 6..947 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:11:48 Download gff for
BS09034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 132752..133690 | 6..947 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:04:57 Download gff for
BS09034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 132752..133690 | 6..947 | 99 | | Minus |
BS09034.5prime Sequence
915 bp (809 high quality bases) assembled on 2006-01-24
> BS09034.5prime
GAAGTTATCAGTCGACATGGCACTACGCGTGGCAGGACTCTTCCTGAAGA
AGGAGCTGGTGGCTCCCGCAACACAGCAGCTGCGTCTGCTGCGTACTGGC
AATACCACCCGCTCCCAGTTCTTGGCCAACTCCCCCAACACGGCTCTAGA
CAAGAGCATTCTGCAGAGGTACCGCAACCTGGAAACGCCGGCCAATCGAG
TGCAGGCTACTTACTTATGGATCGACGGTACCGGCGAGAACATTCGCCTC
AAGGATCGCGTTTTGGACAAAGTACCCAGCTCCGTGGAGGACTTGCCGGA
TTGGCAGTACGACGGCAGTTCCACCTACCAGGCCCATGGCGAGAACTCGG
ACACCACGCTCAAGCCACGCGCCATATATCGCGATCCCTTTAAGCCGGGA
AAGAACGACGTAATTGTCCTGTGCGACACCTACAGCGCCGACGGCAAGCC
GACGGCGTCCAACAAGCGTGCCGCGTTCCAGGCAGCCATTGACCTAATTA
GCGATCAGGAGCCCTGGTTCGGCATTGAGCAAGAATACACTTTATTAGAC
GTGGACGGACGTCCCTTCGGCTGGCCGGAGAACGGTTTCCCAGCCCCACA
AGGTCCTTACTACTGCGGCGTGGGAGCTGACCGTGTGTACGCTCGCGATC
TTGTGGAGGCCCACGTCGTGGCCTGCCTGTATGCTGGGATCGACTTCGCC
GGCACCAATGCCGAGGTAATGCCCGCGCAGTGGGAGTTCCAAATTGGTCC
AGCCGGGATTAAGGCATGTGACGATTTATGGGTGTCGCGATATATTTTGC
AGCGCATAGCTGAGGAGTATGGCGTAGTGGTCACCTTTGACCCCAAACCG
ATGGAGGGTCAGTGGAACGGAGCCGGCGCGCATACCACTTTTCCACAAAG
GAGATGCGTGCTGAA
BS09034.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2718-PC | 1200 | Gs1-RC | 1..871 | 17..887 | 4355 | 100 | Plus |
CG2718-PB | 1200 | Gs1-RB | 1..871 | 17..887 | 4355 | 100 | Plus |
CG1743-PA | 801 | Gs2-RA | 281..323 | 699..741 | 165 | 95.3 | Plus |
CG1743-PB | 1110 | Gs2-RB | 590..632 | 699..741 | 165 | 95.3 | Plus |
CG1743-PC | 1110 | Gs2-RC | 590..632 | 699..741 | 165 | 95.3 | Plus |
CG2718-PC | 1200 | Gs1-RC | 872..899 | 887..914 | 140 | 100 | Plus |
CG2718-PB | 1200 | Gs1-RB | 872..899 | 887..914 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:45:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gs1-RD | 1699 | CG2718-RD | 187..1085 | 17..914 | 4470 | 99.9 | Plus |
Gs1-RB | 2176 | CG2718-RB | 187..1085 | 17..914 | 4470 | 99.9 | Plus |
Gs1-RC | 2396 | CG2718-RC | 407..1305 | 17..914 | 4470 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:45:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 132483..133381 | 17..914 | 4445 | 99.9 | Plus |
X | 23542271 | X | 11428742..11428856 | 507..621 | 215 | 79.1 | Plus |
X | 23542271 | X | 11428985..11429088 | 638..741 | 205 | 79.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:45:07 has no hits.
BS09034.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:57:16 Download gff for
BS09034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1-PC | 1..898 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:02:49 Download gff for
BS09034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2718-PB | 1..898 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:51:54 Download gff for
BS09034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1-RC | 407..1305 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:58 Download gff for
BS09034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1-RC | 407..1305 | 17..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:58 Download gff for
BS09034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 132483..133381 | 17..915 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:51:54 Download gff for
BS09034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 132483..133381 | 17..915 | 99 | | Plus |
BS09034.complete Sequence
1232 bp (1232 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636341
> BS09034.complete
GAAGTTATCAGTCGACATGGCACTACGCGTGGCAGGACTCTTCCTGAAGA
AGGAGCTGGTGGCTCCCGCAACACAGCAGCTGCGTCTGCTGCGTACTGGC
AATACCACCCGCTCCCAGTTCTTGGCCAACTCCCCCAACACGGCTCTAGA
CAAGAGCATTCTGCAGAGGTACCGCAACCTGGAAACGCCGGCCAATCGAG
TGCAGGCTACTTACTTATGGATCGACGGTACCGGCGAGAACATTCGCCTC
AAGGATCGCGTTTTGGACAAAGTACCCAGCTCCGTGGAGGACTTGCCGGA
TTGGCAGTACGACGGCAGTTCCACCTACCAGGCCCATGGCGAGAACTCGG
ACACCACGCTCAAGCCACGCGCCATATATCGCGATCCCTTTAAGCCGGGA
AAGAACGACGTAATTGTCCTGTGCGACACCTACAGCGCCGACGGCAAGCC
GACGGCGTCCAACAAGCGTGCCGCGTTCCAGGCAGCCATTGACCTAATTA
GCGATCAGGAGCCCTGGTTCGGCATTGAGCAAGAATACACTTTATTAGAC
GTGGACGGACGTCCCTTCGGCTGGCCGGAGAACGGTTTCCCAGCCCCACA
AGGTCCTTACTACTGCGGCGTGGGAGCTGACCGTGTGTACGCTCGCGATC
TTGTGGAGGCCCACGTCGTGGCCTGCCTGTATGCTGGGATCGACTTCGCC
GGCACCAATGCCGAGGTAATGCCCGCGCAGTGGGAGTTCCAAATTGGTCC
AGCCGGGATTAAGGCATGTGACGATTTATGGGTGTCGCGATATATTTTGC
AGCGCATAGCTGAGGAGTATGGCGTAGTGGTCACCTTTGACCCCAAACCG
ATGGAGGGTCAGTGGAACGGAGCCGGCGCGCATACCAACTTTTCCACAAA
GGAGATGCGTGCTGATGGCGGAATCAAGGCCATCGAGGAAGCTATCGAGA
AGCTGAGCAAGCGCCACGAGCGGCACATCAAGGCATACGACCCCAAGGAA
GGCAAAGACAATGAACGGCGCCTCGTGGGACGTCTTGAGACTTCTAGCAT
CGATAAGTTTTCTTGGGGCGTGGCCAACCGGGCCGTAAGTGTGCGAGTGC
CGCGTGGCGTTGCGACGGCCGGCAAAGGATACCTCGAAGACCGGCGGCCA
AGCTCCAACTGTGATCCCTACGCCGTGTGCAACGCCATTGTTCGCACCTG
CCTGCTCAACGAGTAGAAGCTTTCTAGACCAT
BS09034.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:22:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gs1-RD | 1200 | CG2718-PD | 1..1200 | 17..1216 | 6000 | 100 | Plus |
Gs1-RB | 1200 | CG2718-PB | 1..1200 | 17..1216 | 6000 | 100 | Plus |
Gs1-RC | 1200 | CG2718-PC | 1..1200 | 17..1216 | 6000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:22:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gs1-RD | 1699 | CG2718-RD | 187..1386 | 17..1216 | 6000 | 100 | Plus |
Gs1-RB | 2176 | CG2718-RB | 187..1386 | 17..1216 | 6000 | 100 | Plus |
Gs1-RC | 2396 | CG2718-RC | 407..1606 | 17..1216 | 6000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:22:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 132483..133682 | 17..1216 | 6000 | 100 | Plus |
X | 23542271 | X | 11428742..11428856 | 507..621 | 215 | 79.1 | Plus |
X | 23542271 | X | 11428985..11429088 | 638..741 | 205 | 79.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:22:23 has no hits.
BS09034.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:15 Download gff for
BS09034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1-RB | 1..1200 | 17..1216 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:59 Download gff for
BS09034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1-RB | 204..1411 | 17..1227 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:49 Download gff for
BS09034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1-RC | 407..1606 | 17..1216 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:15 Download gff for
BS09034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1-RB | 204..1411 | 17..1227 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:01 Download gff for
BS09034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1-RC | 407..1606 | 17..1216 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:01 Download gff for
BS09034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 132483..133682 | 17..1216 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:49 Download gff for
BS09034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 132483..133682 | 17..1216 | 100 | | Plus |
BS09034.pep Sequence
Translation from 16 to 1215
> BS09034.pep
MALRVAGLFLKKELVAPATQQLRLLRTGNTTRSQFLANSPNTALDKSILQ
RYRNLETPANRVQATYLWIDGTGENIRLKDRVLDKVPSSVEDLPDWQYDG
SSTYQAHGENSDTTLKPRAIYRDPFKPGKNDVIVLCDTYSADGKPTASNK
RAAFQAAIDLISDQEPWFGIEQEYTLLDVDGRPFGWPENGFPAPQGPYYC
GVGADRVYARDLVEAHVVACLYAGIDFAGTNAEVMPAQWEFQIGPAGIKA
CDDLWVSRYILQRIAEEYGVVVTFDPKPMEGQWNGAGAHTNFSTKEMRAD
GGIKAIEEAIEKLSKRHERHIKAYDPKEGKDNERRLVGRLETSSIDKFSW
GVANRAVSVRVPRGVATAGKGYLEDRRPSSNCDPYAVCNAIVRTCLLNE*
BS09034.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:45:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gs1-PD | 399 | CG2718-PD | 1..399 | 1..399 | 2117 | 100 | Plus |
Gs1-PB | 399 | CG2718-PB | 1..399 | 1..399 | 2117 | 100 | Plus |
Gs1-PC | 399 | CG2718-PC | 1..399 | 1..399 | 2117 | 100 | Plus |
Gs2-PB | 369 | CG1743-PB | 3..369 | 33..399 | 1303 | 64.9 | Plus |
Gs2-PF | 369 | CG1743-PF | 3..369 | 33..399 | 1302 | 64.7 | Plus |