Clone BS09034 Report

Search the DGRC for BS09034

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:90
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptGs1-RB
Protein status:BS09034.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09034.3prime Sequence

947 bp (905 high quality bases) assembled on 2006-01-24

> BS09034.3prime
ATGGTCTAGAAAGCTTCTACTCGTTGAGCAGGCAGGTGCGAACAATGGCG
TTGCACACGGCGTAGGGATCACAGTTGGAGCTTGGCCGCCGGTCTTCGAG
GTATCCTTTGCCGGCCGTCGCAACGCCACGCGGCACTCGCACACTTACGG
CCCGGTTGGCCACGCCCCAAGAAAACTTATCGATGCTAGAAGTCTCAAGA
CGTCCCACGAGGCGCCGTTCATTGTCTTTGCCTTCCTTGGGGTCGTATGC
CTTGATGTGCCGCTCGTGGCGCTTGCTCAGCTTCTCGATAGCTTCCTCGA
TGGCCTTGATTCCGCCATCAGCACGCATCTCCTTTGTGGAAAAGTTGGTA
TGCGCGCCGGCTCCGTTCCACTGACCCTCCATCGGTTTGGGGTCAAAGGT
GACCACTACGCCATACTCCTCAGCTATGCGCTGCAAAATATATCGCGACA
CCCATAAATCGTCACATGCCTTAATCCCGGCTGGACCAATTTGGAACTCC
CACTGCGCGGGCATTACCTCGGCATTGGTGCCGGCGAAGTCGATCCCAGC
ATACAGGCAGGCCACGACGTGGGCCTCCACAAGATCGCGAGCGTACACAC
GGTCAGCTCCCACGCCGCAGTAGTAAGGACCTTGTGGGGCTGGGAAACCG
TTCTCCGGCCAGCCGAAGGGACGTCCGTCCACGTCTAATAAAGTGTATTC
TTGCTCAATGCCGAACCAGGGCTCCTGATCGCTAATTAGGTCAATGGCTG
CCTGGAACGCGGCACGCTTGTTGGACGCCGTCGGCTTGCCGTCGGCGCTG
TAGGTGTCGCACAGGACAATTACGTCGTTCTTTCCCGGCTTAAAGGGATC
GCGATATATGGCGCGTGGCTTGAGCGTGGTGTCCGAGTTCTCGCCATGGG
CCTGGTAGGTGGAACTGCCGTCGTACTGCCAATCCGGCAAGTCCTCC

BS09034.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG2718-PC 1200 Gs1-RC 270..1200 947..17 4655 100 Minus
CG2718-PB 1200 Gs1-RB 270..1200 947..17 4655 100 Minus
CG1743-PA 801 Gs2-RA 281..323 534..492 165 95.3 Minus
CG1743-PB 1110 Gs2-RB 590..632 534..492 165 95.3 Minus
CG1743-PC 1110 Gs2-RC 590..632 534..492 165 95.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
Gs1-RD 1699 CG2718-RD 456..1386 947..17 4655 100 Minus
Gs1-RB 2176 CG2718-RB 456..1386 947..17 4655 100 Minus
Gs1-RC 2396 CG2718-RC 676..1606 947..17 4655 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 132752..133682 947..17 4655 100 Minus
X 23542271 X 11428742..11428856 726..612 215 79.1 Minus
X 23542271 X 11428985..11429088 595..492 205 79.8 Minus
Blast to na_te.dros performed on 2015-02-12 18:08:48 has no hits.

BS09034.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:57:15 Download gff for BS09034.3prime
Subject Subject Range Query Range Percent Splice Strand
Gs1-PC 270..1200 17..947 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:02:48 Download gff for BS09034.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2718-PB 270..1200 17..947 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:04:57 Download gff for BS09034.3prime
Subject Subject Range Query Range Percent Splice Strand
Gs1-RC 676..1614 6..947 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:11:48 Download gff for BS09034.3prime
Subject Subject Range Query Range Percent Splice Strand
Gs1-RC 676..1614 6..947 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:11:48 Download gff for BS09034.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 132752..133690 6..947 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:04:57 Download gff for BS09034.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 132752..133690 6..947 99   Minus

BS09034.5prime Sequence

915 bp (809 high quality bases) assembled on 2006-01-24

> BS09034.5prime
GAAGTTATCAGTCGACATGGCACTACGCGTGGCAGGACTCTTCCTGAAGA
AGGAGCTGGTGGCTCCCGCAACACAGCAGCTGCGTCTGCTGCGTACTGGC
AATACCACCCGCTCCCAGTTCTTGGCCAACTCCCCCAACACGGCTCTAGA
CAAGAGCATTCTGCAGAGGTACCGCAACCTGGAAACGCCGGCCAATCGAG
TGCAGGCTACTTACTTATGGATCGACGGTACCGGCGAGAACATTCGCCTC
AAGGATCGCGTTTTGGACAAAGTACCCAGCTCCGTGGAGGACTTGCCGGA
TTGGCAGTACGACGGCAGTTCCACCTACCAGGCCCATGGCGAGAACTCGG
ACACCACGCTCAAGCCACGCGCCATATATCGCGATCCCTTTAAGCCGGGA
AAGAACGACGTAATTGTCCTGTGCGACACCTACAGCGCCGACGGCAAGCC
GACGGCGTCCAACAAGCGTGCCGCGTTCCAGGCAGCCATTGACCTAATTA
GCGATCAGGAGCCCTGGTTCGGCATTGAGCAAGAATACACTTTATTAGAC
GTGGACGGACGTCCCTTCGGCTGGCCGGAGAACGGTTTCCCAGCCCCACA
AGGTCCTTACTACTGCGGCGTGGGAGCTGACCGTGTGTACGCTCGCGATC
TTGTGGAGGCCCACGTCGTGGCCTGCCTGTATGCTGGGATCGACTTCGCC
GGCACCAATGCCGAGGTAATGCCCGCGCAGTGGGAGTTCCAAATTGGTCC
AGCCGGGATTAAGGCATGTGACGATTTATGGGTGTCGCGATATATTTTGC
AGCGCATAGCTGAGGAGTATGGCGTAGTGGTCACCTTTGACCCCAAACCG
ATGGAGGGTCAGTGGAACGGAGCCGGCGCGCATACCACTTTTCCACAAAG
GAGATGCGTGCTGAA

BS09034.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG2718-PC 1200 Gs1-RC 1..871 17..887 4355 100 Plus
CG2718-PB 1200 Gs1-RB 1..871 17..887 4355 100 Plus
CG1743-PA 801 Gs2-RA 281..323 699..741 165 95.3 Plus
CG1743-PB 1110 Gs2-RB 590..632 699..741 165 95.3 Plus
CG1743-PC 1110 Gs2-RC 590..632 699..741 165 95.3 Plus
CG2718-PC 1200 Gs1-RC 872..899 887..914 140 100 Plus
CG2718-PB 1200 Gs1-RB 872..899 887..914 140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
Gs1-RD 1699 CG2718-RD 187..1085 17..914 4470 99.9 Plus
Gs1-RB 2176 CG2718-RB 187..1085 17..914 4470 99.9 Plus
Gs1-RC 2396 CG2718-RC 407..1305 17..914 4470 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 132483..133381 17..914 4445 99.9 Plus
X 23542271 X 11428742..11428856 507..621 215 79.1 Plus
X 23542271 X 11428985..11429088 638..741 205 79.8 Plus
Blast to na_te.dros performed on 2015-02-12 04:45:07 has no hits.

BS09034.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:57:16 Download gff for BS09034.5prime
Subject Subject Range Query Range Percent Splice Strand
Gs1-PC 1..898 17..913 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:02:49 Download gff for BS09034.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2718-PB 1..898 17..913 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:51:54 Download gff for BS09034.5prime
Subject Subject Range Query Range Percent Splice Strand
Gs1-RC 407..1305 17..915 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:58 Download gff for BS09034.5prime
Subject Subject Range Query Range Percent Splice Strand
Gs1-RC 407..1305 17..915 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:58 Download gff for BS09034.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 132483..133381 17..915 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:51:54 Download gff for BS09034.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 132483..133381 17..915 99   Plus

BS09034.complete Sequence

1232 bp (1232 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636341

> BS09034.complete
GAAGTTATCAGTCGACATGGCACTACGCGTGGCAGGACTCTTCCTGAAGA
AGGAGCTGGTGGCTCCCGCAACACAGCAGCTGCGTCTGCTGCGTACTGGC
AATACCACCCGCTCCCAGTTCTTGGCCAACTCCCCCAACACGGCTCTAGA
CAAGAGCATTCTGCAGAGGTACCGCAACCTGGAAACGCCGGCCAATCGAG
TGCAGGCTACTTACTTATGGATCGACGGTACCGGCGAGAACATTCGCCTC
AAGGATCGCGTTTTGGACAAAGTACCCAGCTCCGTGGAGGACTTGCCGGA
TTGGCAGTACGACGGCAGTTCCACCTACCAGGCCCATGGCGAGAACTCGG
ACACCACGCTCAAGCCACGCGCCATATATCGCGATCCCTTTAAGCCGGGA
AAGAACGACGTAATTGTCCTGTGCGACACCTACAGCGCCGACGGCAAGCC
GACGGCGTCCAACAAGCGTGCCGCGTTCCAGGCAGCCATTGACCTAATTA
GCGATCAGGAGCCCTGGTTCGGCATTGAGCAAGAATACACTTTATTAGAC
GTGGACGGACGTCCCTTCGGCTGGCCGGAGAACGGTTTCCCAGCCCCACA
AGGTCCTTACTACTGCGGCGTGGGAGCTGACCGTGTGTACGCTCGCGATC
TTGTGGAGGCCCACGTCGTGGCCTGCCTGTATGCTGGGATCGACTTCGCC
GGCACCAATGCCGAGGTAATGCCCGCGCAGTGGGAGTTCCAAATTGGTCC
AGCCGGGATTAAGGCATGTGACGATTTATGGGTGTCGCGATATATTTTGC
AGCGCATAGCTGAGGAGTATGGCGTAGTGGTCACCTTTGACCCCAAACCG
ATGGAGGGTCAGTGGAACGGAGCCGGCGCGCATACCAACTTTTCCACAAA
GGAGATGCGTGCTGATGGCGGAATCAAGGCCATCGAGGAAGCTATCGAGA
AGCTGAGCAAGCGCCACGAGCGGCACATCAAGGCATACGACCCCAAGGAA
GGCAAAGACAATGAACGGCGCCTCGTGGGACGTCTTGAGACTTCTAGCAT
CGATAAGTTTTCTTGGGGCGTGGCCAACCGGGCCGTAAGTGTGCGAGTGC
CGCGTGGCGTTGCGACGGCCGGCAAAGGATACCTCGAAGACCGGCGGCCA
AGCTCCAACTGTGATCCCTACGCCGTGTGCAACGCCATTGTTCGCACCTG
CCTGCTCAACGAGTAGAAGCTTTCTAGACCAT

BS09034.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
Gs1-RD 1200 CG2718-PD 1..1200 17..1216 6000 100 Plus
Gs1-RB 1200 CG2718-PB 1..1200 17..1216 6000 100 Plus
Gs1-RC 1200 CG2718-PC 1..1200 17..1216 6000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:22:26
Subject Length Description Subject Range Query Range Score Percent Strand
Gs1-RD 1699 CG2718-RD 187..1386 17..1216 6000 100 Plus
Gs1-RB 2176 CG2718-RB 187..1386 17..1216 6000 100 Plus
Gs1-RC 2396 CG2718-RC 407..1606 17..1216 6000 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:22:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 132483..133682 17..1216 6000 100 Plus
X 23542271 X 11428742..11428856 507..621 215 79.1 Plus
X 23542271 X 11428985..11429088 638..741 205 79.8 Plus
Blast to na_te.dros performed on 2014-11-27 16:22:23 has no hits.

BS09034.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:15 Download gff for BS09034.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1-RB 1..1200 17..1216 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:59 Download gff for BS09034.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1-RB 204..1411 17..1227 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:49 Download gff for BS09034.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1-RC 407..1606 17..1216 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:15 Download gff for BS09034.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1-RB 204..1411 17..1227 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:01 Download gff for BS09034.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1-RC 407..1606 17..1216 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:01 Download gff for BS09034.complete
Subject Subject Range Query Range Percent Splice Strand
2L 132483..133682 17..1216 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:49 Download gff for BS09034.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 132483..133682 17..1216 100   Plus

BS09034.pep Sequence

Translation from 16 to 1215

> BS09034.pep
MALRVAGLFLKKELVAPATQQLRLLRTGNTTRSQFLANSPNTALDKSILQ
RYRNLETPANRVQATYLWIDGTGENIRLKDRVLDKVPSSVEDLPDWQYDG
SSTYQAHGENSDTTLKPRAIYRDPFKPGKNDVIVLCDTYSADGKPTASNK
RAAFQAAIDLISDQEPWFGIEQEYTLLDVDGRPFGWPENGFPAPQGPYYC
GVGADRVYARDLVEAHVVACLYAGIDFAGTNAEVMPAQWEFQIGPAGIKA
CDDLWVSRYILQRIAEEYGVVVTFDPKPMEGQWNGAGAHTNFSTKEMRAD
GGIKAIEEAIEKLSKRHERHIKAYDPKEGKDNERRLVGRLETSSIDKFSW
GVANRAVSVRVPRGVATAGKGYLEDRRPSSNCDPYAVCNAIVRTCLLNE*

BS09034.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
Gs1-PD 399 CG2718-PD 1..399 1..399 2117 100 Plus
Gs1-PB 399 CG2718-PB 1..399 1..399 2117 100 Plus
Gs1-PC 399 CG2718-PC 1..399 1..399 2117 100 Plus
Gs2-PB 369 CG1743-PB 3..369 33..399 1303 64.9 Plus
Gs2-PF 369 CG1743-PF 3..369 33..399 1302 64.7 Plus