Clone Sequence Records
BS09047.3prime Sequence
894 bp (771 high quality bases) assembled on 2006-01-24
> BS09047.3prime
ATGGTCTAGAAAGCTTTCACGGTAGATCTCCAGATCCGGATTCGTAGAAT
TCTAATATTGATGACCTTTGTGCCACGTTGGGAGACTGCATTTGCGCCAG
ACGCTCACCGGCCTCGCTTTCCGTCTGGATGAGCATAGGGATCTGTTGCG
GCAGATCGCTTGTGGCCCACAGATAAAGGTCTAGCGTCTTCTCCGTGCAG
TCAGCGATGAACCGCACAAAGGGGCGAATATCGCCCTCGTTGGCTAACTT
GAGGAAATGATAGTACTTGCTACGCTGTTGCTTTGGAATTATCACTGGTG
GGTAGCCTGCTCGCATCAACAGCGTGTTCATCAGCAGACGTGAGGTGCGT
CCATTTCCATCGACGAATGGGTGAATATGGACCAACTTGTAGTGTGCAAG
GGCTGCATAGTTGACAGGATGCAGTGTGCTACTGTGCTCCGAGTTTAGCC
ACCGTTCGAAACGCTGCATTAGCAGCGCGAGATCGCCGGGACCTGGCGGT
ATGTGACCTCCAACATACACCTGGTTACGTCGGAACTCGCCCCCTTCAAT
TGGGTCCACATGCCCCAGAACTCTGCGATGCAGCTCGAGGATGTCCTTAA
TAGTGATATCGATTTTTTGCACCAGACTAGCGTTTATGTACTTCATAGCC
AGATCCATGCCCAAGATCTCGTTGTGCTCGTCAATGGATTTGCCGTCTAC
GGCCATGCGGGTCTCTAGGATAGACCTCGTCTGTGCCAGCGTCATGGTGT
TGCCCTCAATGCCTACTGAGTGGTAAATGTGCTGGAAGTAGGCTTCTTTC
TTTGCCCGTCGCAGGGCTCCGTTGGACTCGTGAATGGCGGAGAGGGCGTC
TCGTTTGGAGTCCAGCGATTCCAGGCGGCGTTCGTCCAGACTCT
BS09047.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:19:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9523-PA | 1479 | CG9523-RA | 602..1479 | 894..17 | 4390 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:28:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fic-RA | 1918 | CG9523-RA | 792..1669 | 894..17 | 4390 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:28:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6425725..6426122 | 414..17 | 1975 | 99.7 | Minus |
2L | 23513712 | 2L | 6425127..6425406 | 894..615 | 1400 | 100 | Minus |
2L | 23513712 | 2L | 6425466..6425669 | 614..411 | 1020 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:28:19 has no hits.
BS09047.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:57:39 Download gff for
BS09047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9523-PA | 602..1479 | 17..894 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:03:21 Download gff for
BS09047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9523-PA | 602..1479 | 17..894 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:56:32 Download gff for
BS09047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fic-RA | 792..1669 | 17..894 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:59:48 Download gff for
BS09047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fic-RA | 792..1669 | 17..894 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:59:48 Download gff for
BS09047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6425127..6425406 | 615..894 | 100 | -> | Minus |
2L | 6425466..6425669 | 411..614 | 100 | -> | Minus |
2L | 6425729..6426122 | 17..410 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:56:32 Download gff for
BS09047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6425127..6425406 | 615..894 | 100 | -> | Minus |
arm_2L | 6425466..6425669 | 411..614 | 100 | -> | Minus |
arm_2L | 6425729..6426122 | 17..410 | 100 | | Minus |
BS09047.5prime Sequence
916 bp (806 high quality bases) assembled on 2006-01-24
> BS09047.5prime
GAAGTTATCAGTCGACATGGGCACGGAAGCAGAACAACCGAGTCCACCTG
CTCAGCAGCAAGATCAAGAGAATCCGCCTCTCTGTAAGGCACAAAATCCG
AAGCCTGCCCGCCTCTATCGCTTTGTACTGATCTTCGTCGCTGGCAGCCT
GGCGGCCTGGACGTTTCATGCCCTAAGCTCAACGAATCTGGTCTGGAAAC
TGCGGCAGCTCCATCATCTGCCGACCGCCCACTACTTGCAGACGCGTGAC
GAGTTCGCACTGTACTCCGTGGAGGAGCTAAATGCCTTCAAAGAATTCTA
CGACAAGAGCGTCAGCGACAGTGTCGGCGCCAGCTACACGGAGGCGGAGC
AGACGAACATCAAGGAGGCGCTGGGGGCACTGCGAATGGCCCAGGACTTG
TACCTGGCGGGGAAGGATGACAAGGCGGCGCGTCTATTCGAACATGCTCT
CGCTCTAGCGCCCCGACACCCGGAAGTCCTACTGCGCTACGGCGAGTTCC
TTGAGCACAACCAGCGCAACATTGTGCTGGCGGATCAGTACTACTTTCAG
GCTCTGACCATCAGCCCGAGCAACTCCGAGGCACTAGCCAACCGTCAGCG
CACGGCAGACGTGGTGCAGAGTCTGGACGAACGCCGCCTGGAATCGCTGG
ACTCCAAACGAGACGCCCTCTCCGCCATTCACGAGTCCAACGGAGCCCTG
CGACGGGCAAAGAAAGAAGCCTACTTCCAGCACATTTACCACTCAGTAGG
CATTGAGGGCAACACCATGACGCTGGCACAGACGAGGTCTATCCTAGAGA
CCCGCATGGCCGTAGACGGCAAATCCATTGACGAGCACAACGAGATCTTG
GGCATGGATCTGGCTATGAAGTACATAAACGCTAGTCTGGGTGCAAAAAT
CGATATCACTATAAAG
BS09047.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:19:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9523-PA | 1479 | CG9523-RA | 1..874 | 17..890 | 4370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:42:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fic-RA | 1918 | CG9523-RA | 190..1090 | 16..916 | 4445 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:42:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6424525..6425399 | 16..890 | 4375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:42:20 has no hits.
BS09047.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:57:40 Download gff for
BS09047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9523-PA | 1..900 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:03:22 Download gff for
BS09047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9523-PA | 1..900 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:15:21 Download gff for
BS09047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fic-RA | 183..1090 | 9..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:04:17 Download gff for
BS09047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fic-RA | 183..1090 | 9..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:04:17 Download gff for
BS09047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6424518..6425406 | 9..897 | 99 | -> | Plus |
2L | 6425466..6425484 | 898..916 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:15:21 Download gff for
BS09047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6424518..6425406 | 9..897 | 99 | -> | Plus |
arm_2L | 6425466..6425484 | 898..916 | 94 | | Plus |
BS09047.complete Sequence
1511 bp (1511 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636342
> BS09047.complete
GAAGTTATCAGTCGACATGGGCACGGAAGCAGAACAACCGAGTCCACCTG
CTCAGCAGCAAGATCAAGAGAATCCGCCTCTCTGTAAGGCACAAAATCCG
AAGCCTGCCCGCCTCTATCGCTTTGTACTGATCTTCGTCGCTGGCAGCCT
GGCGGCCTGGACGTTTCATGCCCTAAGCTCAACGAATCTGGTCTGGAAAC
TGCGGCAGCTCCATCATCTGCCGACCGCCCACTACTTGCAGACGCGTGAC
GAGTTCGCACTGTACTCCGTGGAGGAGCTAAATGCCTTCAAAGAATTCTA
CGACAAGAGCGTCAGCGACAGTGTCGGCGCCAGCTACACGGAGGCGGAGC
AGACGAACATCAAGGAGGCGCTGGGGGCACTGCGAATGGCCCAGGACTTG
TACCTGGCGGGGAAGGATGACAAGGCGGCGCGTCTATTCGAACATGCTCT
CGCTCTAGCGCCCCGACACCCGGAAGTCCTACTGCGCTACGGCGAGTTCC
TTGAGCACAACCAGCGCAACATTGTGCTGGCGGATCAGTACTACTTTCAG
GCTCTGACCATCAGCCCGAGCAACTCCGAGGCACTAGCCAACCGTCAGCG
CACGGCAGACGTGGTGCAGAGTCTGGACGAACGCCGCCTGGAATCGCTGG
ACTCCAAACGAGACGCCCTCTCCGCCATTCACGAGTCCAACGGAGCCCTG
CGACGGGCAAAGAAAGAAGCCTACTTCCAGCACATTTACCACTCAGTAGG
CATTGAGGGCAACACCATGACGCTGGCACAGACGAGGTCTATCCTAGAGA
CCCGCATGGCCGTAGACGGCAAATCCATTGACGAGCACAACGAGATCTTG
GGCATGGATCTGGCTATGAAGTACATAAACGCTAGTCTGGTGCAAAAAAT
CGATATCACTATTAAGGACATCCTCGAGCTGCATCGCAGAGTTCTGGGGC
ATGTGGACCCAATTGAAGGGGGCGAGTTCCGACGTAACCAGGTGTATGTT
GGAGGTCACATACCGCCAGGTCCCGGCGATCTCGCGCTGCTAATGCAGCG
TTTCGAACGGTGGCTAAACTCGGAGCACAGTAGCACACTGCATCCTGTCA
ACTATGCAGCCCTTGCACACTACAAGTTGGTCCATATTCACCCATTCGTC
GATGGAAATGGACGCACCTCACGTCTGCTGATGAACACGCTGTTGATGCG
AGCAGGCTACCCACCAGTGATAATTCCAAAGCAACAGCGTAGCAAGTACT
ATCATTTCCTCAAGTTAGCCAACGAGGGCGATATTCGCCCCTTTGTGCGG
TTCATCGCTGACTGCACGGAGAAGACGCTAGACCTTTATCTGTGGGCCAC
AAGCGATCTGCCGCAACAGATCCCTATGCTCATCCAGACGGAAAGCGAGG
CCGGTGAGCGTCTGGCGCAAATGCAGTCTCCCAACGTGGCACAAAGGTCA
TCAATATTAGAATTCTACGAATCCGGATCTGGAGATCTACCGTGAAAGCT
TTCTAGACCAT
BS09047.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:07:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fic-RA | 1479 | CG9523-PA | 1..1479 | 17..1495 | 7395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:07:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fic-RA | 1918 | CG9523-RA | 190..1669 | 16..1495 | 7400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:07:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6424525..6425406 | 16..897 | 4410 | 100 | Plus |
2L | 23513712 | 2L | 6425725..6426122 | 1098..1495 | 1975 | 99.7 | Plus |
2L | 23513712 | 2L | 6425466..6425669 | 898..1101 | 1020 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:07:19 has no hits.
BS09047.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:16 Download gff for
BS09047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9523-RA | 1..1479 | 17..1495 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:01 Download gff for
BS09047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9523-RA | 182..1668 | 9..1495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:55 Download gff for
BS09047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fic-RA | 191..1668 | 17..1494 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:18 Download gff for
BS09047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9523-RA | 182..1668 | 9..1495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:46 Download gff for
BS09047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fic-RA | 191..1668 | 17..1494 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:46 Download gff for
BS09047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6424526..6425406 | 17..897 | 100 | -> | Plus |
2L | 6425466..6425669 | 898..1101 | 100 | -> | Plus |
2L | 6425729..6426121 | 1102..1494 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:55 Download gff for
BS09047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6424526..6425406 | 17..897 | 100 | -> | Plus |
arm_2L | 6425466..6425669 | 898..1101 | 100 | -> | Plus |
arm_2L | 6425729..6426121 | 1102..1494 | 100 | | Plus |
BS09047.pep Sequence
Translation from 16 to 1494
> BS09047.pep
MGTEAEQPSPPAQQQDQENPPLCKAQNPKPARLYRFVLIFVAGSLAAWTF
HALSSTNLVWKLRQLHHLPTAHYLQTRDEFALYSVEELNAFKEFYDKSVS
DSVGASYTEAEQTNIKEALGALRMAQDLYLAGKDDKAARLFEHALALAPR
HPEVLLRYGEFLEHNQRNIVLADQYYFQALTISPSNSEALANRQRTADVV
QSLDERRLESLDSKRDALSAIHESNGALRRAKKEAYFQHIYHSVGIEGNT
MTLAQTRSILETRMAVDGKSIDEHNEILGMDLAMKYINASLVQKIDITIK
DILELHRRVLGHVDPIEGGEFRRNQVYVGGHIPPGPGDLALLMQRFERWL
NSEHSSTLHPVNYAALAHYKLVHIHPFVDGNGRTSRLLMNTLLMRAGYPP
VIIPKQQRSKYYHFLKLANEGDIRPFVRFIADCTEKTLDLYLWATSDLPQ
QIPMLIQTESEAGERLAQMQSPNVAQRSSILEFYESGSGDLP*
BS09047.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:45:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fic-PA | 492 | CG9523-PA | 1..492 | 1..492 | 2542 | 100 | Plus |