Clone BS09047 Report

Search the DGRC for BS09047

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:90
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptFic-RA
Protein status:BS09047.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09047.3prime Sequence

894 bp (771 high quality bases) assembled on 2006-01-24

> BS09047.3prime
ATGGTCTAGAAAGCTTTCACGGTAGATCTCCAGATCCGGATTCGTAGAAT
TCTAATATTGATGACCTTTGTGCCACGTTGGGAGACTGCATTTGCGCCAG
ACGCTCACCGGCCTCGCTTTCCGTCTGGATGAGCATAGGGATCTGTTGCG
GCAGATCGCTTGTGGCCCACAGATAAAGGTCTAGCGTCTTCTCCGTGCAG
TCAGCGATGAACCGCACAAAGGGGCGAATATCGCCCTCGTTGGCTAACTT
GAGGAAATGATAGTACTTGCTACGCTGTTGCTTTGGAATTATCACTGGTG
GGTAGCCTGCTCGCATCAACAGCGTGTTCATCAGCAGACGTGAGGTGCGT
CCATTTCCATCGACGAATGGGTGAATATGGACCAACTTGTAGTGTGCAAG
GGCTGCATAGTTGACAGGATGCAGTGTGCTACTGTGCTCCGAGTTTAGCC
ACCGTTCGAAACGCTGCATTAGCAGCGCGAGATCGCCGGGACCTGGCGGT
ATGTGACCTCCAACATACACCTGGTTACGTCGGAACTCGCCCCCTTCAAT
TGGGTCCACATGCCCCAGAACTCTGCGATGCAGCTCGAGGATGTCCTTAA
TAGTGATATCGATTTTTTGCACCAGACTAGCGTTTATGTACTTCATAGCC
AGATCCATGCCCAAGATCTCGTTGTGCTCGTCAATGGATTTGCCGTCTAC
GGCCATGCGGGTCTCTAGGATAGACCTCGTCTGTGCCAGCGTCATGGTGT
TGCCCTCAATGCCTACTGAGTGGTAAATGTGCTGGAAGTAGGCTTCTTTC
TTTGCCCGTCGCAGGGCTCCGTTGGACTCGTGAATGGCGGAGAGGGCGTC
TCGTTTGGAGTCCAGCGATTCCAGGCGGCGTTCGTCCAGACTCT

BS09047.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:19:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG9523-PA 1479 CG9523-RA 602..1479 894..17 4390 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:28:23
Subject Length Description Subject Range Query Range Score Percent Strand
Fic-RA 1918 CG9523-RA 792..1669 894..17 4390 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:28:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6425725..6426122 414..17 1975 99.7 Minus
2L 23513712 2L 6425127..6425406 894..615 1400 100 Minus
2L 23513712 2L 6425466..6425669 614..411 1020 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:28:19 has no hits.

BS09047.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:57:39 Download gff for BS09047.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9523-PA 602..1479 17..894 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:03:21 Download gff for BS09047.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9523-PA 602..1479 17..894 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:56:32 Download gff for BS09047.3prime
Subject Subject Range Query Range Percent Splice Strand
Fic-RA 792..1669 17..894 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:59:48 Download gff for BS09047.3prime
Subject Subject Range Query Range Percent Splice Strand
Fic-RA 792..1669 17..894 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:59:48 Download gff for BS09047.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6425127..6425406 615..894 100 -> Minus
2L 6425466..6425669 411..614 100 -> Minus
2L 6425729..6426122 17..410 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:56:32 Download gff for BS09047.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6425127..6425406 615..894 100 -> Minus
arm_2L 6425466..6425669 411..614 100 -> Minus
arm_2L 6425729..6426122 17..410 100   Minus

BS09047.5prime Sequence

916 bp (806 high quality bases) assembled on 2006-01-24

> BS09047.5prime
GAAGTTATCAGTCGACATGGGCACGGAAGCAGAACAACCGAGTCCACCTG
CTCAGCAGCAAGATCAAGAGAATCCGCCTCTCTGTAAGGCACAAAATCCG
AAGCCTGCCCGCCTCTATCGCTTTGTACTGATCTTCGTCGCTGGCAGCCT
GGCGGCCTGGACGTTTCATGCCCTAAGCTCAACGAATCTGGTCTGGAAAC
TGCGGCAGCTCCATCATCTGCCGACCGCCCACTACTTGCAGACGCGTGAC
GAGTTCGCACTGTACTCCGTGGAGGAGCTAAATGCCTTCAAAGAATTCTA
CGACAAGAGCGTCAGCGACAGTGTCGGCGCCAGCTACACGGAGGCGGAGC
AGACGAACATCAAGGAGGCGCTGGGGGCACTGCGAATGGCCCAGGACTTG
TACCTGGCGGGGAAGGATGACAAGGCGGCGCGTCTATTCGAACATGCTCT
CGCTCTAGCGCCCCGACACCCGGAAGTCCTACTGCGCTACGGCGAGTTCC
TTGAGCACAACCAGCGCAACATTGTGCTGGCGGATCAGTACTACTTTCAG
GCTCTGACCATCAGCCCGAGCAACTCCGAGGCACTAGCCAACCGTCAGCG
CACGGCAGACGTGGTGCAGAGTCTGGACGAACGCCGCCTGGAATCGCTGG
ACTCCAAACGAGACGCCCTCTCCGCCATTCACGAGTCCAACGGAGCCCTG
CGACGGGCAAAGAAAGAAGCCTACTTCCAGCACATTTACCACTCAGTAGG
CATTGAGGGCAACACCATGACGCTGGCACAGACGAGGTCTATCCTAGAGA
CCCGCATGGCCGTAGACGGCAAATCCATTGACGAGCACAACGAGATCTTG
GGCATGGATCTGGCTATGAAGTACATAAACGCTAGTCTGGGTGCAAAAAT
CGATATCACTATAAAG

BS09047.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:19:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG9523-PA 1479 CG9523-RA 1..874 17..890 4370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:42:22
Subject Length Description Subject Range Query Range Score Percent Strand
Fic-RA 1918 CG9523-RA 190..1090 16..916 4445 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:42:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6424525..6425399 16..890 4375 100 Plus
Blast to na_te.dros performed on 2015-02-13 02:42:20 has no hits.

BS09047.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:57:40 Download gff for BS09047.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9523-PA 1..900 17..916 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:03:22 Download gff for BS09047.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9523-PA 1..900 17..916 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:15:21 Download gff for BS09047.5prime
Subject Subject Range Query Range Percent Splice Strand
Fic-RA 183..1090 9..916 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:04:17 Download gff for BS09047.5prime
Subject Subject Range Query Range Percent Splice Strand
Fic-RA 183..1090 9..916 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:04:17 Download gff for BS09047.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6424518..6425406 9..897 99 -> Plus
2L 6425466..6425484 898..916 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:15:21 Download gff for BS09047.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6424518..6425406 9..897 99 -> Plus
arm_2L 6425466..6425484 898..916 94   Plus

BS09047.complete Sequence

1511 bp (1511 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636342

> BS09047.complete
GAAGTTATCAGTCGACATGGGCACGGAAGCAGAACAACCGAGTCCACCTG
CTCAGCAGCAAGATCAAGAGAATCCGCCTCTCTGTAAGGCACAAAATCCG
AAGCCTGCCCGCCTCTATCGCTTTGTACTGATCTTCGTCGCTGGCAGCCT
GGCGGCCTGGACGTTTCATGCCCTAAGCTCAACGAATCTGGTCTGGAAAC
TGCGGCAGCTCCATCATCTGCCGACCGCCCACTACTTGCAGACGCGTGAC
GAGTTCGCACTGTACTCCGTGGAGGAGCTAAATGCCTTCAAAGAATTCTA
CGACAAGAGCGTCAGCGACAGTGTCGGCGCCAGCTACACGGAGGCGGAGC
AGACGAACATCAAGGAGGCGCTGGGGGCACTGCGAATGGCCCAGGACTTG
TACCTGGCGGGGAAGGATGACAAGGCGGCGCGTCTATTCGAACATGCTCT
CGCTCTAGCGCCCCGACACCCGGAAGTCCTACTGCGCTACGGCGAGTTCC
TTGAGCACAACCAGCGCAACATTGTGCTGGCGGATCAGTACTACTTTCAG
GCTCTGACCATCAGCCCGAGCAACTCCGAGGCACTAGCCAACCGTCAGCG
CACGGCAGACGTGGTGCAGAGTCTGGACGAACGCCGCCTGGAATCGCTGG
ACTCCAAACGAGACGCCCTCTCCGCCATTCACGAGTCCAACGGAGCCCTG
CGACGGGCAAAGAAAGAAGCCTACTTCCAGCACATTTACCACTCAGTAGG
CATTGAGGGCAACACCATGACGCTGGCACAGACGAGGTCTATCCTAGAGA
CCCGCATGGCCGTAGACGGCAAATCCATTGACGAGCACAACGAGATCTTG
GGCATGGATCTGGCTATGAAGTACATAAACGCTAGTCTGGTGCAAAAAAT
CGATATCACTATTAAGGACATCCTCGAGCTGCATCGCAGAGTTCTGGGGC
ATGTGGACCCAATTGAAGGGGGCGAGTTCCGACGTAACCAGGTGTATGTT
GGAGGTCACATACCGCCAGGTCCCGGCGATCTCGCGCTGCTAATGCAGCG
TTTCGAACGGTGGCTAAACTCGGAGCACAGTAGCACACTGCATCCTGTCA
ACTATGCAGCCCTTGCACACTACAAGTTGGTCCATATTCACCCATTCGTC
GATGGAAATGGACGCACCTCACGTCTGCTGATGAACACGCTGTTGATGCG
AGCAGGCTACCCACCAGTGATAATTCCAAAGCAACAGCGTAGCAAGTACT
ATCATTTCCTCAAGTTAGCCAACGAGGGCGATATTCGCCCCTTTGTGCGG
TTCATCGCTGACTGCACGGAGAAGACGCTAGACCTTTATCTGTGGGCCAC
AAGCGATCTGCCGCAACAGATCCCTATGCTCATCCAGACGGAAAGCGAGG
CCGGTGAGCGTCTGGCGCAAATGCAGTCTCCCAACGTGGCACAAAGGTCA
TCAATATTAGAATTCTACGAATCCGGATCTGGAGATCTACCGTGAAAGCT
TTCTAGACCAT

BS09047.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:07:20
Subject Length Description Subject Range Query Range Score Percent Strand
Fic-RA 1479 CG9523-PA 1..1479 17..1495 7395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:07:21
Subject Length Description Subject Range Query Range Score Percent Strand
Fic-RA 1918 CG9523-RA 190..1669 16..1495 7400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6424525..6425406 16..897 4410 100 Plus
2L 23513712 2L 6425725..6426122 1098..1495 1975 99.7 Plus
2L 23513712 2L 6425466..6425669 898..1101 1020 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:07:19 has no hits.

BS09047.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:16 Download gff for BS09047.complete
Subject Subject Range Query Range Percent Splice Strand
CG9523-RA 1..1479 17..1495 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:01 Download gff for BS09047.complete
Subject Subject Range Query Range Percent Splice Strand
CG9523-RA 182..1668 9..1495 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:55 Download gff for BS09047.complete
Subject Subject Range Query Range Percent Splice Strand
Fic-RA 191..1668 17..1494 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:18 Download gff for BS09047.complete
Subject Subject Range Query Range Percent Splice Strand
CG9523-RA 182..1668 9..1495 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:46 Download gff for BS09047.complete
Subject Subject Range Query Range Percent Splice Strand
Fic-RA 191..1668 17..1494 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:46 Download gff for BS09047.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6424526..6425406 17..897 100 -> Plus
2L 6425466..6425669 898..1101 100 -> Plus
2L 6425729..6426121 1102..1494 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:55 Download gff for BS09047.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6424526..6425406 17..897 100 -> Plus
arm_2L 6425466..6425669 898..1101 100 -> Plus
arm_2L 6425729..6426121 1102..1494 100   Plus

BS09047.pep Sequence

Translation from 16 to 1494

> BS09047.pep
MGTEAEQPSPPAQQQDQENPPLCKAQNPKPARLYRFVLIFVAGSLAAWTF
HALSSTNLVWKLRQLHHLPTAHYLQTRDEFALYSVEELNAFKEFYDKSVS
DSVGASYTEAEQTNIKEALGALRMAQDLYLAGKDDKAARLFEHALALAPR
HPEVLLRYGEFLEHNQRNIVLADQYYFQALTISPSNSEALANRQRTADVV
QSLDERRLESLDSKRDALSAIHESNGALRRAKKEAYFQHIYHSVGIEGNT
MTLAQTRSILETRMAVDGKSIDEHNEILGMDLAMKYINASLVQKIDITIK
DILELHRRVLGHVDPIEGGEFRRNQVYVGGHIPPGPGDLALLMQRFERWL
NSEHSSTLHPVNYAALAHYKLVHIHPFVDGNGRTSRLLMNTLLMRAGYPP
VIIPKQQRSKYYHFLKLANEGDIRPFVRFIADCTEKTLDLYLWATSDLPQ
QIPMLIQTESEAGERLAQMQSPNVAQRSSILEFYESGSGDLP*

BS09047.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
Fic-PA 492 CG9523-PA 1..492 1..492 2542 100 Plus