Clone Sequence Records
BS09051.3prime Sequence
957 bp (845 high quality bases) assembled on 2006-01-24
> BS09051.3prime
ATGGTCTAGAAAGCTTCTAATTGAACAGATTCTCGTTCTCGTTGGCCAGG
ACGAGATCCTCCAGCGGCGGATGATCGTGGACATCCGGCTCGTGCTGTCC
TGAATCCGGCCCGCGATTAAATGCATTCTCCTCGCCCTTCTTCAAGCGCT
GGTAGACCAAAATGGAACGACCTGTGCGCGATTGGCGATTCTGCAAGAGA
GAAGCAAGATTAGGTGACTGGGCACCCAGTGCCTCCGACCACTGGTCCAC
CAGAGCCTGCGAGCCCTCCAGCCGTGTTACCTCTGCGTGCTCGATGCGAT
GGAGCAGCCGGTAGTTACGGAGGAACACGCTTATGTTCTCGGCCAGCGGA
TCGAACAGAACCACATGTGTGGGCAAAGCGGTGAGCGGATGCATAGGAAT
GTGCGAGTTAATCCAGTGCACGGGATCCTCAAAGAAGCGATCGGCCTCGT
CCTTATACTGCTCCTTCTTTTCCAGGTTCGGTTCGCAAGTCAAAAACCTC
ATGGTGACATTCTGGTGAATGTGACTATAGTATGGTGTGGAGTGGCAAGG
CATTAGGAAGAGAATATTCGCCTGGTGTTCGCGTTCATCTCTGTATTCCC
GAGCTATTTCTCTCAACTTGGGCATCAGTTCAATGGGTCCCTTCTGATGC
ACTGTGCTCAGATACCAGGCGGGCATAACATTGCCCACGAGAATGACCAA
AGCGGTGGTCCACAACATTGTGCTCGAGGCTCTGATGCTCCAACGCGATA
GGGCATCTGTGATAACGTACAAGCAGAGCGGCAGGAGCGGGGAAACAAAT
CGAAACTCCTTGTGCTCCACAGCACTCAGAACAACCAGAGTCAGGAAGAT
GGTGATCAGAAGCTGCTTGCTAACAGGGTACTTCTCCGACTTCTTCACAG
TTTCATCACGCCAAAGATGAAGGGCAAGGTGTTGATGCCCCAGACTGTTG
GGCAGCC
BS09051.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:19:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12006-PA | 1686 | CG12006-RA | 799..1686 | 904..17 | 4440 | 100 | Minus |
CG12006-PB | 1596 | CG12006-RB | 799..1422 | 904..281 | 3120 | 100 | Minus |
CG12006-PB | 1596 | CG12006-RB | 1421..1596 | 192..17 | 880 | 100 | Minus |
CG12006-PA | 1686 | CG12006-RA | 762..798 | 940..904 | 185 | 100 | Minus |
CG12006-PB | 1596 | CG12006-RB | 762..798 | 940..904 | 185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12006-RA | 2244 | CG12006-RA | 973..1911 | 954..16 | 4620 | 99.6 | Minus |
CG12006-RB | 2154 | CG12006-RB | 973..1646 | 954..281 | 3295 | 99.4 | Minus |
CG12006-RB | 2154 | CG12006-RB | 1645..1821 | 192..16 | 885 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:20:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3813114..3813625 | 527..16 | 2560 | 100 | Minus |
3L | 28110227 | 3L | 3812629..3813053 | 948..525 | 2045 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:21:01 has no hits.
BS09051.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:57:48 Download gff for
BS09051.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12006-PA | 745..1686 | 17..957 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:03:33 Download gff for
BS09051.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12006-PA | 745..1686 | 17..957 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:56:04 Download gff for
BS09051.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12006-RA | 969..1911 | 16..957 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:41 Download gff for
BS09051.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12006-RA | 969..1911 | 16..957 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:41 Download gff for
BS09051.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3812620..3813053 | 525..957 | 98 | -> | Minus |
3L | 3813117..3813625 | 16..524 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:56:04 Download gff for
BS09051.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3812620..3813053 | 525..957 | 98 | -> | Minus |
arm_3L | 3813117..3813625 | 16..524 | 100 | | Minus |
BS09051.5prime Sequence
879 bp (812 high quality bases) assembled on 2006-01-24
> BS09051.5prime
GAAGTTATCAGTCGACATGAAGCTGATCTACGTGTTTCTCCTAATCTTGG
CCGTGCGCTTGGCCTCTGTTTTCGTGGTCCAAACATATTACGTTCCGGAT
GAATACTGGCAGAGTTTAGAAGTGGCCCACAAACTGACCTTTGGCTATGG
CTACCTGACTTGGGAATGGGTTCAGGGCATTCGCAGCTATGTGTACCCCC
TGCTGATCGCCGGACTCTATAAAATCCTGGCCCTCCTGCAATTGGATAGT
GCCCACCTTCTGGTTGTGCTGCCAAGGATTGTACAGGCTCTGCTTTCGGC
CTACTCCGACTATCGCTTCTTTGTGTGGACGGGCAAGCGAAAGTGGGCGC
TGTTTCTGATCCTGGTCCCGTGGTTCTGGTTCTACACGGGCTCGCGCACT
CTGGCCAACACATTGGAAGCCTCCCTGACAACGATTGCGTTGAGCTACTT
CCCCTGGTATGGCGAATCCACTGCTTACCTGTGGCCAGCTGCCATCTGCT
GCTTCCTGAGACCTACGGCTGCTGTTATTTGGCTCCCATTATCCTTGTAT
CATCTGCGCAGAAGTCGCCAGAACGTGCTGGAGCTGATCCTGAAGCGATT
TGTGCTCATTGGTTTACTCGTTGCTGGTCTGGGAATAGCCATCGATACCT
ATTGGCATGGCCAGTTGATAGTGACTCCGTACGAGTTCCTCAAGTACAAC
ATATTTAACAACATCGGCAGCTTCTATGGCTCACACCCTTGGCACTGGTA
CTTCAGCGTGGGCTTGCCCACAGTCCTGGGCATCAACACCTTGCCCTTCA
TCTTTGGCGTGATGGAAACTGTGAAGAAGTCGGAGAAGTACCCTGTTAGC
AAGCAGCTTCTGATCACCATCTTCCTGAC
BS09051.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:19:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12006-PA | 1686 | CG12006-RA | 1..863 | 17..879 | 4315 | 100 | Plus |
CG12006-PB | 1596 | CG12006-RB | 1..863 | 17..879 | 4315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:29:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12006-RB | 2154 | CG12006-RB | 225..1087 | 17..879 | 4315 | 100 | Plus |
CG12006-RA | 2244 | CG12006-RA | 225..1087 | 17..879 | 4315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:29:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3811941..3812413 | 140..612 | 2350 | 99.8 | Plus |
3L | 28110227 | 3L | 3812471..3812738 | 612..879 | 1340 | 100 | Plus |
3L | 28110227 | 3L | 3811545..3811672 | 17..144 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:29:49 has no hits.
BS09051.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:57:49 Download gff for
BS09051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12006-PA | 1..863 | 17..879 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:03:35 Download gff for
BS09051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12006-PB | 1..863 | 17..879 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:24:21 Download gff for
BS09051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12006-RA | 225..1087 | 17..879 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:47:55 Download gff for
BS09051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12006-RA | 225..1087 | 17..879 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:47:55 Download gff for
BS09051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3811545..3811672 | 17..144 | 100 | -> | Plus |
3L | 3811946..3812413 | 145..612 | 100 | -> | Plus |
3L | 3812472..3812738 | 613..879 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:24:21 Download gff for
BS09051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3811545..3811672 | 17..144 | 100 | -> | Plus |
arm_3L | 3811946..3812413 | 145..612 | 100 | -> | Plus |
arm_3L | 3812472..3812738 | 613..879 | 100 | | Plus |
BS09051.complete Sequence
1718 bp assembled on 2007-10-17
GenBank Submission: FJ636343
> BS09051.complete
GAAGTTATCAGTCGACATGAAGCTGATCTACGTGTTTCTCCTAATCTTGG
CCGTGCGCTTGGCCTCTGTTTTCGTGGTCCAAACATATTACGTTCCGGAT
GAATACTGGCAGAGTTTAGAAGTGGCCCACAAACTGACCTTTGGCTATGG
CTACCTGACTTGGGAATGGGTTCAGGGCATTCGCAGCTATGTGTACCCCC
TGCTGATCGCCGGACTCTATAAAATCCTGGCCCTCCTGCAATTGGATAGT
GCCCACCTTCTGGTTGTGCTGCCAAGGATTGTACAGGCTCTGCTTTCGGC
CTACTCCGACTATCGCTTCTTTGTGTGGACGGGCAAGCGAAAGTGGGCGC
TGTTTCTGATCCTGGTCCCGTGGTTCTGGTTCTACACGGGCTCGCGCACT
CTGGCCAACACATTGGAAGCCTCCCTGACAACGATTGCGTTGAGCTACTT
CCCCTGGTATGGCGAATCCACTGCTTACCTGTGGCCAGCTGCCATCTGCT
GCTTCCTGAGACCTACGGCTGCTGTTATTTGGCTCCCATTATCCTTGTAT
CATCTGCGCAGAAGTCGCCAGAACGTGCTGGAGCTGATCCTGAAGCGATT
TGTGCTCATTGGTTTACTCGTTGCTGGTCTGGGAATAGCCATCGATACCT
ATTGGCATGGCCAGTTGATAGTGACTCCGTACGAGTTCCTCAAGTACAAC
ATATTTAACAACATCGGCAGCTTCTATGGCTCACACCCTTGGCACTGGTA
CTTCAGCGTGGGCTTGCCCACAGTCCTGGGCATCAACACCTTGCCCTTCA
TCTTTGGCGTGATGGAAACTGTGAAGAAGTCGGAGAAGTACCCTGTTAGC
AAGCAGCTTCTGATCACCATCTTCCTGACTCTGGTTGTTCTGAGTGCTGT
GGAGCACAAGGAGTTTCGATTTGTTTCCCCGCTCCTGCCGCTCTGCTTGT
ACGTTATCACAGATGCCCTATCGCGTTGGAGCATCAGAGCCTCGAGCACA
ATGTTGTGGACCACCGCTTTGGTCATTCTCGTGGGCAATGTTATGCCCGC
CTGGTATCTGAGCACAGTGCATCAGAAGGGACCCATTGAACTGATGCCCA
AGTTGAGAGAAATAGCTCGGGAATACAGAGATGAACGCGAACACCAGGCG
AATATTCTCTTCCTAATGCCTTGCCACTCCACACCATACTATAGTCACAT
TCACCAGAATGTCACCATGAGGTTTTTGACTTGCGAACCGAACCTGGAAA
AGAAGGAGCAGTATAAGGACGAGGCCGATCGCTTCTTTGAGGATCCCGTG
CACTGGATTAACTCGCACATTCCTATGCATCCGCTCACCGCTTTGCCCAC
ACATGTGGTTCTGTTCGATCCGCTGGCCGAGAACATAAGCGTGTTCCTCC
GTAACTACCGGCTGCTCCATCGCATCGAGCACGCAGAGGTAACACGGCTG
GAGGGCTCGCAGGCTCTGGTGGACCAGTGGTCGGAGGCACTGGGTGCCCA
GTCACCTAATCTTGCTTCTCTCTTGCAGAATCGCCAATCGCGCACAGGTC
GTTCCATTTTGGTCTACCAGCGCTTGAAGAAGGGCGAGGAGAATGCATTT
AATCGCGGGCCGGATTCAGGACAGCACGAGCCGGATGTCCACGATCATCC
GCCGCTGGAGGATCTCGTCCTGGCCAACGAGAACGAGAATCTGTTCAATT
AGAAGCTTTCTAGACCAT
BS09051.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:27:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12006-RA | 1686 | CG12006-PA | 1..1686 | 17..1702 | 8430 | 100 | Plus |
CG12006-RB | 1596 | CG12006-PB | 1..1422 | 17..1438 | 7110 | 100 | Plus |
CG12006-RB | 1596 | CG12006-PB | 1421..1596 | 1527..1702 | 880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:27:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12006-RA | 2244 | CG12006-RA | 225..1911 | 17..1703 | 8435 | 100 | Plus |
CG12006-RB | 2154 | CG12006-RB | 225..1646 | 17..1438 | 7110 | 100 | Plus |
CG12006-RB | 2154 | CG12006-RB | 1645..1821 | 1527..1703 | 885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:27:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3812471..3813053 | 612..1194 | 2915 | 100 | Plus |
3L | 28110227 | 3L | 3813114..3813625 | 1192..1703 | 2560 | 100 | Plus |
3L | 28110227 | 3L | 3811941..3812413 | 140..612 | 2350 | 99.8 | Plus |
3L | 28110227 | 3L | 3811545..3811672 | 17..144 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:27:50 has no hits.
BS09051.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:56 Download gff for
BS09051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12006-RA | 1..1686 | 17..1702 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:39:53 Download gff for
BS09051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12006-RA | 219..1905 | 17..1703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:12 Download gff for
BS09051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12006-RA | 225..1910 | 17..1702 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:52 Download gff for
BS09051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12006-RA | 219..1904 | 17..1702 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:19:23 Download gff for
BS09051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12006-RA | 225..1910 | 17..1702 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:19:23 Download gff for
BS09051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3811545..3811672 | 17..144 | 100 | -> | Plus |
3L | 3811946..3812413 | 145..612 | 100 | -> | Plus |
3L | 3812472..3813053 | 613..1194 | 100 | -> | Plus |
3L | 3813117..3813624 | 1195..1702 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:12 Download gff for
BS09051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3811545..3811672 | 17..144 | 100 | -> | Plus |
arm_3L | 3811946..3812413 | 145..612 | 100 | -> | Plus |
arm_3L | 3812472..3813053 | 613..1194 | 100 | -> | Plus |
arm_3L | 3813117..3813624 | 1195..1702 | 100 | | Plus |
BS09051.pep Sequence
Translation from 16 to 1701
> BS09051.pep
MKLIYVFLLILAVRLASVFVVQTYYVPDEYWQSLEVAHKLTFGYGYLTWE
WVQGIRSYVYPLLIAGLYKILALLQLDSAHLLVVLPRIVQALLSAYSDYR
FFVWTGKRKWALFLILVPWFWFYTGSRTLANTLEASLTTIALSYFPWYGE
STAYLWPAAICCFLRPTAAVIWLPLSLYHLRRSRQNVLELILKRFVLIGL
LVAGLGIAIDTYWHGQLIVTPYEFLKYNIFNNIGSFYGSHPWHWYFSVGL
PTVLGINTLPFIFGVMETVKKSEKYPVSKQLLITIFLTLVVLSAVEHKEF
RFVSPLLPLCLYVITDALSRWSIRASSTMLWTTALVILVGNVMPAWYLST
VHQKGPIELMPKLREIAREYRDEREHQANILFLMPCHSTPYYSHIHQNVT
MRFLTCEPNLEKKEQYKDEADRFFEDPVHWINSHIPMHPLTALPTHVVLF
DPLAENISVFLRNYRLLHRIEHAEVTRLEGSQALVDQWSEALGAQSPNLA
SLLQNRQSRTGRSILVYQRLKKGEENAFNRGPDSGQHEPDVHDHPPLEDL
VLANENENLFN*
BS09051.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12006-PA | 561 | CG12006-PA | 1..561 | 1..561 | 2975 | 100 | Plus |
CG12006-PB | 531 | CG12006-PB | 1..531 | 1..561 | 2788 | 94.7 | Plus |
CG11851-PA | 623 | CG11851-PA | 102..416 | 30..329 | 164 | 26.4 | Plus |