Clone BS09051 Report

Search the DGRC for BS09051

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:90
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptCG12006-RA
Protein status:BS09051.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09051.3prime Sequence

957 bp (845 high quality bases) assembled on 2006-01-24

> BS09051.3prime
ATGGTCTAGAAAGCTTCTAATTGAACAGATTCTCGTTCTCGTTGGCCAGG
ACGAGATCCTCCAGCGGCGGATGATCGTGGACATCCGGCTCGTGCTGTCC
TGAATCCGGCCCGCGATTAAATGCATTCTCCTCGCCCTTCTTCAAGCGCT
GGTAGACCAAAATGGAACGACCTGTGCGCGATTGGCGATTCTGCAAGAGA
GAAGCAAGATTAGGTGACTGGGCACCCAGTGCCTCCGACCACTGGTCCAC
CAGAGCCTGCGAGCCCTCCAGCCGTGTTACCTCTGCGTGCTCGATGCGAT
GGAGCAGCCGGTAGTTACGGAGGAACACGCTTATGTTCTCGGCCAGCGGA
TCGAACAGAACCACATGTGTGGGCAAAGCGGTGAGCGGATGCATAGGAAT
GTGCGAGTTAATCCAGTGCACGGGATCCTCAAAGAAGCGATCGGCCTCGT
CCTTATACTGCTCCTTCTTTTCCAGGTTCGGTTCGCAAGTCAAAAACCTC
ATGGTGACATTCTGGTGAATGTGACTATAGTATGGTGTGGAGTGGCAAGG
CATTAGGAAGAGAATATTCGCCTGGTGTTCGCGTTCATCTCTGTATTCCC
GAGCTATTTCTCTCAACTTGGGCATCAGTTCAATGGGTCCCTTCTGATGC
ACTGTGCTCAGATACCAGGCGGGCATAACATTGCCCACGAGAATGACCAA
AGCGGTGGTCCACAACATTGTGCTCGAGGCTCTGATGCTCCAACGCGATA
GGGCATCTGTGATAACGTACAAGCAGAGCGGCAGGAGCGGGGAAACAAAT
CGAAACTCCTTGTGCTCCACAGCACTCAGAACAACCAGAGTCAGGAAGAT
GGTGATCAGAAGCTGCTTGCTAACAGGGTACTTCTCCGACTTCTTCACAG
TTTCATCACGCCAAAGATGAAGGGCAAGGTGTTGATGCCCCAGACTGTTG
GGCAGCC

BS09051.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:19:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12006-PA 1686 CG12006-RA 799..1686 904..17 4440 100 Minus
CG12006-PB 1596 CG12006-RB 799..1422 904..281 3120 100 Minus
CG12006-PB 1596 CG12006-RB 1421..1596 192..17 880 100 Minus
CG12006-PA 1686 CG12006-RA 762..798 940..904 185 100 Minus
CG12006-PB 1596 CG12006-RB 762..798 940..904 185 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG12006-RA 2244 CG12006-RA 973..1911 954..16 4620 99.6 Minus
CG12006-RB 2154 CG12006-RB 973..1646 954..281 3295 99.4 Minus
CG12006-RB 2154 CG12006-RB 1645..1821 192..16 885 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:20:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3813114..3813625 527..16 2560 100 Minus
3L 28110227 3L 3812629..3813053 948..525 2045 99.3 Minus
Blast to na_te.dros performed on 2015-02-10 21:21:01 has no hits.

BS09051.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:57:48 Download gff for BS09051.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12006-PA 745..1686 17..957 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:03:33 Download gff for BS09051.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12006-PA 745..1686 17..957 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:56:04 Download gff for BS09051.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12006-RA 969..1911 16..957 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:41 Download gff for BS09051.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12006-RA 969..1911 16..957 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:41 Download gff for BS09051.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3812620..3813053 525..957 98 -> Minus
3L 3813117..3813625 16..524 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:56:04 Download gff for BS09051.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3812620..3813053 525..957 98 -> Minus
arm_3L 3813117..3813625 16..524 100   Minus

BS09051.5prime Sequence

879 bp (812 high quality bases) assembled on 2006-01-24

> BS09051.5prime
GAAGTTATCAGTCGACATGAAGCTGATCTACGTGTTTCTCCTAATCTTGG
CCGTGCGCTTGGCCTCTGTTTTCGTGGTCCAAACATATTACGTTCCGGAT
GAATACTGGCAGAGTTTAGAAGTGGCCCACAAACTGACCTTTGGCTATGG
CTACCTGACTTGGGAATGGGTTCAGGGCATTCGCAGCTATGTGTACCCCC
TGCTGATCGCCGGACTCTATAAAATCCTGGCCCTCCTGCAATTGGATAGT
GCCCACCTTCTGGTTGTGCTGCCAAGGATTGTACAGGCTCTGCTTTCGGC
CTACTCCGACTATCGCTTCTTTGTGTGGACGGGCAAGCGAAAGTGGGCGC
TGTTTCTGATCCTGGTCCCGTGGTTCTGGTTCTACACGGGCTCGCGCACT
CTGGCCAACACATTGGAAGCCTCCCTGACAACGATTGCGTTGAGCTACTT
CCCCTGGTATGGCGAATCCACTGCTTACCTGTGGCCAGCTGCCATCTGCT
GCTTCCTGAGACCTACGGCTGCTGTTATTTGGCTCCCATTATCCTTGTAT
CATCTGCGCAGAAGTCGCCAGAACGTGCTGGAGCTGATCCTGAAGCGATT
TGTGCTCATTGGTTTACTCGTTGCTGGTCTGGGAATAGCCATCGATACCT
ATTGGCATGGCCAGTTGATAGTGACTCCGTACGAGTTCCTCAAGTACAAC
ATATTTAACAACATCGGCAGCTTCTATGGCTCACACCCTTGGCACTGGTA
CTTCAGCGTGGGCTTGCCCACAGTCCTGGGCATCAACACCTTGCCCTTCA
TCTTTGGCGTGATGGAAACTGTGAAGAAGTCGGAGAAGTACCCTGTTAGC
AAGCAGCTTCTGATCACCATCTTCCTGAC

BS09051.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:19:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG12006-PA 1686 CG12006-RA 1..863 17..879 4315 100 Plus
CG12006-PB 1596 CG12006-RB 1..863 17..879 4315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG12006-RB 2154 CG12006-RB 225..1087 17..879 4315 100 Plus
CG12006-RA 2244 CG12006-RA 225..1087 17..879 4315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3811941..3812413 140..612 2350 99.8 Plus
3L 28110227 3L 3812471..3812738 612..879 1340 100 Plus
3L 28110227 3L 3811545..3811672 17..144 640 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:29:49 has no hits.

BS09051.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:57:49 Download gff for BS09051.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12006-PA 1..863 17..879 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:03:35 Download gff for BS09051.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12006-PB 1..863 17..879 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:24:21 Download gff for BS09051.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12006-RA 225..1087 17..879 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:47:55 Download gff for BS09051.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12006-RA 225..1087 17..879 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:47:55 Download gff for BS09051.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3811545..3811672 17..144 100 -> Plus
3L 3811946..3812413 145..612 100 -> Plus
3L 3812472..3812738 613..879 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:24:21 Download gff for BS09051.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3811545..3811672 17..144 100 -> Plus
arm_3L 3811946..3812413 145..612 100 -> Plus
arm_3L 3812472..3812738 613..879 100   Plus

BS09051.complete Sequence

1718 bp assembled on 2007-10-17

GenBank Submission: FJ636343

> BS09051.complete
GAAGTTATCAGTCGACATGAAGCTGATCTACGTGTTTCTCCTAATCTTGG
CCGTGCGCTTGGCCTCTGTTTTCGTGGTCCAAACATATTACGTTCCGGAT
GAATACTGGCAGAGTTTAGAAGTGGCCCACAAACTGACCTTTGGCTATGG
CTACCTGACTTGGGAATGGGTTCAGGGCATTCGCAGCTATGTGTACCCCC
TGCTGATCGCCGGACTCTATAAAATCCTGGCCCTCCTGCAATTGGATAGT
GCCCACCTTCTGGTTGTGCTGCCAAGGATTGTACAGGCTCTGCTTTCGGC
CTACTCCGACTATCGCTTCTTTGTGTGGACGGGCAAGCGAAAGTGGGCGC
TGTTTCTGATCCTGGTCCCGTGGTTCTGGTTCTACACGGGCTCGCGCACT
CTGGCCAACACATTGGAAGCCTCCCTGACAACGATTGCGTTGAGCTACTT
CCCCTGGTATGGCGAATCCACTGCTTACCTGTGGCCAGCTGCCATCTGCT
GCTTCCTGAGACCTACGGCTGCTGTTATTTGGCTCCCATTATCCTTGTAT
CATCTGCGCAGAAGTCGCCAGAACGTGCTGGAGCTGATCCTGAAGCGATT
TGTGCTCATTGGTTTACTCGTTGCTGGTCTGGGAATAGCCATCGATACCT
ATTGGCATGGCCAGTTGATAGTGACTCCGTACGAGTTCCTCAAGTACAAC
ATATTTAACAACATCGGCAGCTTCTATGGCTCACACCCTTGGCACTGGTA
CTTCAGCGTGGGCTTGCCCACAGTCCTGGGCATCAACACCTTGCCCTTCA
TCTTTGGCGTGATGGAAACTGTGAAGAAGTCGGAGAAGTACCCTGTTAGC
AAGCAGCTTCTGATCACCATCTTCCTGACTCTGGTTGTTCTGAGTGCTGT
GGAGCACAAGGAGTTTCGATTTGTTTCCCCGCTCCTGCCGCTCTGCTTGT
ACGTTATCACAGATGCCCTATCGCGTTGGAGCATCAGAGCCTCGAGCACA
ATGTTGTGGACCACCGCTTTGGTCATTCTCGTGGGCAATGTTATGCCCGC
CTGGTATCTGAGCACAGTGCATCAGAAGGGACCCATTGAACTGATGCCCA
AGTTGAGAGAAATAGCTCGGGAATACAGAGATGAACGCGAACACCAGGCG
AATATTCTCTTCCTAATGCCTTGCCACTCCACACCATACTATAGTCACAT
TCACCAGAATGTCACCATGAGGTTTTTGACTTGCGAACCGAACCTGGAAA
AGAAGGAGCAGTATAAGGACGAGGCCGATCGCTTCTTTGAGGATCCCGTG
CACTGGATTAACTCGCACATTCCTATGCATCCGCTCACCGCTTTGCCCAC
ACATGTGGTTCTGTTCGATCCGCTGGCCGAGAACATAAGCGTGTTCCTCC
GTAACTACCGGCTGCTCCATCGCATCGAGCACGCAGAGGTAACACGGCTG
GAGGGCTCGCAGGCTCTGGTGGACCAGTGGTCGGAGGCACTGGGTGCCCA
GTCACCTAATCTTGCTTCTCTCTTGCAGAATCGCCAATCGCGCACAGGTC
GTTCCATTTTGGTCTACCAGCGCTTGAAGAAGGGCGAGGAGAATGCATTT
AATCGCGGGCCGGATTCAGGACAGCACGAGCCGGATGTCCACGATCATCC
GCCGCTGGAGGATCTCGTCCTGGCCAACGAGAACGAGAATCTGTTCAATT
AGAAGCTTTCTAGACCAT

BS09051.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG12006-RA 1686 CG12006-PA 1..1686 17..1702 8430 100 Plus
CG12006-RB 1596 CG12006-PB 1..1422 17..1438 7110 100 Plus
CG12006-RB 1596 CG12006-PB 1421..1596 1527..1702 880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG12006-RA 2244 CG12006-RA 225..1911 17..1703 8435 100 Plus
CG12006-RB 2154 CG12006-RB 225..1646 17..1438 7110 100 Plus
CG12006-RB 2154 CG12006-RB 1645..1821 1527..1703 885 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3812471..3813053 612..1194 2915 100 Plus
3L 28110227 3L 3813114..3813625 1192..1703 2560 100 Plus
3L 28110227 3L 3811941..3812413 140..612 2350 99.8 Plus
3L 28110227 3L 3811545..3811672 17..144 640 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:27:50 has no hits.

BS09051.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:56 Download gff for BS09051.complete
Subject Subject Range Query Range Percent Splice Strand
CG12006-RA 1..1686 17..1702 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:39:53 Download gff for BS09051.complete
Subject Subject Range Query Range Percent Splice Strand
CG12006-RA 219..1905 17..1703 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:12 Download gff for BS09051.complete
Subject Subject Range Query Range Percent Splice Strand
CG12006-RA 225..1910 17..1702 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:52 Download gff for BS09051.complete
Subject Subject Range Query Range Percent Splice Strand
CG12006-RA 219..1904 17..1702 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:19:23 Download gff for BS09051.complete
Subject Subject Range Query Range Percent Splice Strand
CG12006-RA 225..1910 17..1702 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:19:23 Download gff for BS09051.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3811545..3811672 17..144 100 -> Plus
3L 3811946..3812413 145..612 100 -> Plus
3L 3812472..3813053 613..1194 100 -> Plus
3L 3813117..3813624 1195..1702 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:12 Download gff for BS09051.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3811545..3811672 17..144 100 -> Plus
arm_3L 3811946..3812413 145..612 100 -> Plus
arm_3L 3812472..3813053 613..1194 100 -> Plus
arm_3L 3813117..3813624 1195..1702 100   Plus

BS09051.pep Sequence

Translation from 16 to 1701

> BS09051.pep
MKLIYVFLLILAVRLASVFVVQTYYVPDEYWQSLEVAHKLTFGYGYLTWE
WVQGIRSYVYPLLIAGLYKILALLQLDSAHLLVVLPRIVQALLSAYSDYR
FFVWTGKRKWALFLILVPWFWFYTGSRTLANTLEASLTTIALSYFPWYGE
STAYLWPAAICCFLRPTAAVIWLPLSLYHLRRSRQNVLELILKRFVLIGL
LVAGLGIAIDTYWHGQLIVTPYEFLKYNIFNNIGSFYGSHPWHWYFSVGL
PTVLGINTLPFIFGVMETVKKSEKYPVSKQLLITIFLTLVVLSAVEHKEF
RFVSPLLPLCLYVITDALSRWSIRASSTMLWTTALVILVGNVMPAWYLST
VHQKGPIELMPKLREIAREYRDEREHQANILFLMPCHSTPYYSHIHQNVT
MRFLTCEPNLEKKEQYKDEADRFFEDPVHWINSHIPMHPLTALPTHVVLF
DPLAENISVFLRNYRLLHRIEHAEVTRLEGSQALVDQWSEALGAQSPNLA
SLLQNRQSRTGRSILVYQRLKKGEENAFNRGPDSGQHEPDVHDHPPLEDL
VLANENENLFN*

BS09051.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG12006-PA 561 CG12006-PA 1..561 1..561 2975 100 Plus
CG12006-PB 531 CG12006-PB 1..531 1..561 2788 94.7 Plus
CG11851-PA 623 CG11851-PA 102..416 30..329 164 26.4 Plus