Clone Sequence Records
BS09054.3prime Sequence
881 bp (879 high quality bases) assembled on 2006-01-24
> BS09054.3prime
ATGGTCTTGAAAGCTTTTAATATCGTAAATCGGGCTTGTACTTGGCTATA
TATTTGTCCAAAGTTTCCCAAAATTTGCTGAGCACTGCCCGATCCATATG
ACGCTTGTTTTGCGATAGTCGGAGTAGCGTCACTGACCAGCGCTCCACGT
TTGAGTCCAATTTCATTTCGCTAAAGCACAAATGAAAAGCGCAAATTTTT
GAGAATATATCGACGGGATTGCCTTCCCAAGGCCAGCCCTTGAACTGCCA
CTGGGGTCCCATAACGAAGACGGCCACCACCCGTTGCCACTCCTGTTGCG
AGAGCTTGGTGGGATTATCTATCACCCGGTAAGACACAGTCTGATTGTTG
CGTTTTCGCTGTAACAGCACTTCGCATTCGCGCTGGCAGCCCTGCAGCTT
TTTATCCGAGGTGGACATGAAGCGCAGTTCCTGCAGGATATCCTTCGCGT
TGAGCATGGTAATGAGGCTTGTGTTGGCAGACGGTATGATAATAATGGGG
GTGCGAGATGTTCGCTTCGATGGACCATTGGCGGGCAGTTGCCGAGCTTG
GGCCGCAGGTAGCAATTCCTTGGGCCGCCCGGCGGCTGCTCCCGCTATTA
CACCCGGTGCTCCCGGTAGGTTGTTAGCCTGCGCCTTACGCTGAGCCAGT
GAGCCCTCCGTCACGGATTTCAGCGACATACCGTGGTATGTGCCGAGCGT
GTCGATCTTAAAGCCCTCGGTCTCCTCCTTTTGCCGATTGAAGCGCTCCT
GGTCGTAACGGTTGTATTGCGAGAGCTGCGGTTGTGGTTTGGCTATTCGA
GCCGGCTCCGGCATCTTAATGGGATTGGGCACCTGTGGACGATTGCGTCC
CTCCTCGCGCGCCTTGATGCCCCTGAGCATA
BS09054.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:19:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11990-PA | 1617 | CG11990-RA | 762..1617 | 872..17 | 4280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:00:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hyx-RB | 2479 | CG11990-RB | 1216..2071 | 872..17 | 4280 | 100 | Minus |
| hyx-RA | 2221 | CG11990-RA | 958..1813 | 872..17 | 4280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:00:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9040798..9041311 | 872..359 | 2570 | 100 | Minus |
| 3R | 32079331 | 3R | 9041469..9041633 | 360..196 | 825 | 100 | Minus |
| 3R | 32079331 | 3R | 9041701..9041842 | 195..54 | 710 | 100 | Minus |
| 3R | 32079331 | 3R | 9041905..9041941 | 53..17 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:00:56 has no hits.
BS09054.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:57:52 Download gff for
BS09054.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11990-PA | 754..1617 | 17..880 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:03:39 Download gff for
BS09054.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11990-PA | 754..1617 | 17..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:54:14 Download gff for
BS09054.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hyx-RA | 950..1817 | 12..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:22:00 Download gff for
BS09054.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hyx-RA | 950..1817 | 12..880 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:22:00 Download gff for
BS09054.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9040790..9041311 | 359..880 | 99 | -> | Minus |
| 3R | 9041471..9041633 | 196..358 | 100 | -> | Minus |
| 3R | 9041701..9041842 | 54..195 | 100 | -> | Minus |
| 3R | 9041905..9041945 | 12..53 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:54:14 Download gff for
BS09054.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4866512..4867033 | 359..880 | 99 | -> | Minus |
| arm_3R | 4867193..4867355 | 196..358 | 100 | -> | Minus |
| arm_3R | 4867423..4867564 | 54..195 | 100 | -> | Minus |
| arm_3R | 4867627..4867667 | 12..53 | 92 | | Minus |
BS09054.5prime Sequence
841 bp (775 high quality bases) assembled on 2006-01-24
> BS09054.5prime
GAAGTTATCAGTCGACATGGCAGATCCGCTCAGCCTGCTTCGGCAGTACA
ACATAAACAAAAAGGAGATTGTCGAGCGAGACAGCCAGATTATCTTCGGC
GAGTTCTCCTGGCCGAAGAGCGTGAAGACCAACTATCTCAAATATGGATC
CGGTAAGAAGGGCGCTCCACGTGAGTACTACACGCTGGAGTGCCTGCTGT
ACCTGCTCAAGAATGTGATGCTGCAACACTCGGTCTACGTGCGACAGTGC
GCCGCCGAGGATATACCCGCTGTGAATCGGCCGGATCGTAAAGAGCTCCT
GGCCTATCTGAATGGCGAGACGCCAACGTGTGCCAGCATCGACAAGAGTG
CCCCGCTGGAAATCCCCACTCAGGTGAAGCGTGCCGCCGAGGGTGAACCT
TCCAGCGTTGAGGTGGCTGCCAAGAAGGCCCGCTTCGAGGAGACTCAAGT
GCAGAAGGTGCGCGAGCAATTGGCCGCCCGATGGGATGTCAACCAGAAGG
AGACCGCTGTCAACATGGACAACATCAAGTCGCTGTCCGAGACGATGTCC
GTTGAGAAGATCGCCGCCATCAAGGCAAAGCGTCTGGCCAACAAGCGAAC
GACCATTAAAAGGACGGACAATGACGAGGCCATGGGAACTGATTTGCGTG
CCATCCTGGACTATGATGTGGACTCCACAAAGGACATTATCAGCAGAGAA
CGGCAGTGGCGCACGCGAACTTCGATTCTGCAAAGCACGGGCAAGATCTT
TGCCAAGAACATCTTTGCTATGCTTCAGGGCATCAAGGCGCGCGAGGAGG
GACGCAATCGTCCACAGGTGCCCAATCCCATTAAGATGCCG
BS09054.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:19:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11990-PA | 1617 | CG11990-RA | 1..825 | 17..841 | 4125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:20:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hyx-RB | 2479 | CG11990-RB | 455..1279 | 17..841 | 4125 | 100 | Plus |
| hyx-RA | 2221 | CG11990-RA | 197..1021 | 17..841 | 4125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:20:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9040167..9040861 | 147..841 | 3475 | 100 | Plus |
| 3R | 32079331 | 3R | 9039962..9040092 | 17..147 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:20:50 has no hits.
BS09054.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:57:53 Download gff for
BS09054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11990-PA | 1..825 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:03:41 Download gff for
BS09054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11990-PA | 1..825 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:12:55 Download gff for
BS09054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hyx-RA | 190..1021 | 9..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:21:06 Download gff for
BS09054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hyx-RA | 190..1021 | 9..841 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:21:06 Download gff for
BS09054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9039955..9040092 | 9..147 | 97 | -> | Plus |
| 3R | 9040168..9040861 | 148..841 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:12:55 Download gff for
BS09054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4865677..4865814 | 9..147 | 97 | -> | Plus |
| arm_3R | 4865890..4866583 | 148..841 | 100 | | Plus |
BS09054.complete Sequence
1649 bp assembled on 2008-08-14
GenBank Submission: FJ636344
> BS09054.complete
GAAGTTATCAGTCGACATGGCAGATCCGCTCAGCCTGCTTCGGCAGTACA
ACATAAACAAAAAGGAGATTGTCGAGCGAGACAGCCAGATTATCTTCGGC
GAGTTCTCCTGGCCGAAGAGCGTGAAGACCAACTATCTCAAATATGGATC
CGGTAAGAAGGGCGCTCCACGTGAGTACTACACGCTGGAGTGCCTGCTGT
ACCTGCTCAAGAATGTGATGCTGCAACACTCGGTCTACGTGCGACAGTGC
GCCGCCGAGGATATACCCGCTGTGAATCGGCCGGATCGTAAAGAGCTCCT
GGCCTATCTGAATGGCGAGACGCCAACGTGTGCCAGCATCGACAAGAGTG
CCCCGCTGGAAATCCCCACTCAGGTGAAGCGTGCCGCCGAGGGTGAACCT
TCCAGCGTTGAGGTGGCTGCCAAGAAGGCCCGCTTCGAGGAGACTCAAGT
GCAGAAGGTGCGCGAGCAATTGGCCGCCCGATGGGATGTCAACCAGAAGG
AGACCGCTGTCAACATGGACAACATCAAGTCGCTGTCCGAGACGATGTCC
GTTGAGAAGATCGCCGCCATCAAGGCAAAGCGTCTGGCCAACAAGCGAAC
GACCATTAAAAGGACGGACAATGACGAGGCCATGGGAACTGATTTGCGTG
CCATCCTGGACTATGATGTGGACTCCACAAAGGACATTATCAGCAGAGAA
CGGCAGTGGCGCACGCGAACTTCGATTCTGCAAAGCACGGGCAAGATCTT
TGCCAAGAACATCTTTGCTATGCTTCAGGGCATCAAGGCGCGCGAGGAGG
GACGCAATCGTCCACAGGTGCCCAATCCCATTAAGATGCCGGAGCCGGCT
CGAATAGCCAAACCACAACCGCAGCTCTCGCAATACAACCGTTACGACCA
GGAGCGCTTCAATCGGCAAAAGGAGGAGACCGAGGGCTTTAAGATCGACA
CGCTCGGCACATACCACGGTATGTCGCTGAAATCCGTGACGGAGGGCTCA
CTGGCTCAGCGTAAGGCGCAGGCTAACAACCTACCGGGAGCACCGGGTGT
AATAGCGGGAGCAGCCGCCGGGCGGCCCAAGGAATTGCTACCTGCGGCCC
AAGCTCGGCAACTGCCCGCCAATGGTCCATCGAAGCGAACATCTCGCACC
CCCATTATTATCATACCGTCTGCCAACACAAGCCTCATTACCATGCTCAA
CGCGAAGGATATCCTGCAGGAACTGCGCTTCATGTCCACCTCGGATAAAA
AGCTGCAGGGCTGCCAGCGCGAATGCGAAGTGCTGTTACAGCGAAAACGC
AACAATCAGACTGTGTCTTACCGGGTGATAGATAATCCCACCAAGCTCTC
GCAACAGGAGTGGCAACGGGTGGTGGCCGTCTTCGTTATGGGACCCCAGT
GGCAGTTCAAGGGCTGGCCTTGGGAAGGCAATCCCGTCGATATATTCTCA
AAAATTTGCGCTTTTCATTTGTGCTTTAGCGAAATGAAATTGGACTCAAA
CGTGGAGCGCTGGTCAGTGACGCTACTCCGACTATCGCAAAACAAGCGTC
ATATGGATCGGGCAGTGCTCAGCAAATTTTGGGAAACTTTGGACAAATAT
ATAGCCAAGTACAAGCCCGATTTACGATATTAAAAGCTTTCTAGACCAT
BS09054.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:28:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hyx-RB | 1617 | CG11990-PB | 1..1617 | 17..1633 | 8085 | 100 | Plus |
| hyx-RA | 1617 | CG11990-PA | 1..1617 | 17..1633 | 8085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:28:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hyx-RB | 2479 | CG11990-RB | 455..2071 | 17..1633 | 8085 | 100 | Plus |
| hyx-RA | 2221 | CG11990-RA | 197..1813 | 17..1633 | 8085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:28:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9040167..9041311 | 147..1291 | 5725 | 100 | Plus |
| 3R | 32079331 | 3R | 9041469..9041633 | 1290..1454 | 825 | 100 | Plus |
| 3R | 32079331 | 3R | 9041701..9041842 | 1455..1596 | 710 | 100 | Plus |
| 3R | 32079331 | 3R | 9039962..9040092 | 17..147 | 655 | 100 | Plus |
| 3R | 32079331 | 3R | 9041905..9041941 | 1597..1633 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:28:01 has no hits.
BS09054.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:50:56 Download gff for
BS09054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hyx-RB | 270..1897 | 9..1638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:18:37 Download gff for
BS09054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hyx-RA | 197..1811 | 17..1631 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:53:56 Download gff for
BS09054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hyx-RA | 175..1789 | 17..1631 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:39 Download gff for
BS09054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hyx-RA | 197..1811 | 17..1631 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:39 Download gff for
BS09054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9039962..9040092 | 17..147 | 100 | -> | Plus |
| 3R | 9040168..9041311 | 148..1291 | 100 | -> | Plus |
| 3R | 9041471..9041633 | 1292..1454 | 100 | -> | Plus |
| 3R | 9041701..9041842 | 1455..1596 | 100 | -> | Plus |
| 3R | 9041905..9041939 | 1597..1631 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:18:37 Download gff for
BS09054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4867627..4867661 | 1597..1631 | 100 | | Plus |
| arm_3R | 4865684..4865814 | 17..147 | 100 | -> | Plus |
| arm_3R | 4865890..4867033 | 148..1291 | 100 | -> | Plus |
| arm_3R | 4867193..4867355 | 1292..1454 | 100 | -> | Plus |
| arm_3R | 4867423..4867564 | 1455..1596 | 100 | -> | Plus |
BS09054.pep Sequence
Translation from 16 to 1632
> BS09054.pep
MADPLSLLRQYNINKKEIVERDSQIIFGEFSWPKSVKTNYLKYGSGKKGA
PREYYTLECLLYLLKNVMLQHSVYVRQCAAEDIPAVNRPDRKELLAYLNG
ETPTCASIDKSAPLEIPTQVKRAAEGEPSSVEVAAKKARFEETQVQKVRE
QLAARWDVNQKETAVNMDNIKSLSETMSVEKIAAIKAKRLANKRTTIKRT
DNDEAMGTDLRAILDYDVDSTKDIISRERQWRTRTSILQSTGKIFAKNIF
AMLQGIKAREEGRNRPQVPNPIKMPEPARIAKPQPQLSQYNRYDQERFNR
QKEETEGFKIDTLGTYHGMSLKSVTEGSLAQRKAQANNLPGAPGVIAGAA
AGRPKELLPAAQARQLPANGPSKRTSRTPIIIIPSANTSLITMLNAKDIL
QELRFMSTSDKKLQGCQRECEVLLQRKRNNQTVSYRVIDNPTKLSQQEWQ
RVVAVFVMGPQWQFKGWPWEGNPVDIFSKICAFHLCFSEMKLDSNVERWS
VTLLRLSQNKRHMDRAVLSKFWETLDKYIAKYKPDLRY*
BS09054.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hyx-PB | 538 | CG11990-PB | 1..538 | 1..538 | 2776 | 100 | Plus |
| hyx-PA | 538 | CG11990-PA | 1..538 | 1..538 | 2776 | 100 | Plus |
| CG6220-PA | 359 | CG6220-PA | 5..347 | 170..530 | 440 | 31.3 | Plus |
