Clone Sequence Records
BS09055.5prime Sequence
952 bp (847 high quality bases) assembled on 2006-01-24
> BS09055.5prime
GAAGTTATCAGTCGACATGCCCGTGGGAACGTTTGACGCCTGGGATGCGG
CCGTGCTGATCACCATCCTGGTCATATCGGCTCTGATTGGCATCTACTAC
CGGTATACAGGCGGCAAGCAAAAGACCACACAGGAGTATCTGATGGCGGA
CCAGAGCATGACCACTTTTCCGGTCTCCTTCAGCCTGATGGCAAGCTTCA
TGTCCGCCATCTCACTGATGGGCGTCTCCAACGAGTCCTACGAATTTGGT
ACCATCTTCTGTGTGATCAACATTGCCTACGTGCTGAGTACGCCCATTGC
CGCGTACTTCTTCCTTCCTGTTTTCTACAGGATGCGGACGACCAGTGTGT
ACGAGTATCTGGAGCGGCGCTTTGGCCAGGCCACCCGGCTGTCCGCCTCC
CTGGCCTTCACCGTGCAAATGGTGCTTTACATGGGCATTGCACTCTATGC
ACCAGCGCTCGCTTTAGAAGCTGTAACCGGCATTCATCGGTCAATGGCCA
TCGTGGTCATTGGACTGGTGTGCACCTTCTATTCGACACTTGGCGGCCTG
AAGGCGGTGCTCATCACGGATGTGTTTCAGTCCTTCCTCATGTTTGCCGC
CATCTACGCCGTGATTGCCGTGTCGGCCATTAAAGCCGGCGGATTCGCGG
CCATCTGGGATGTGGCTGTGGAGCGAGGACGCGTGAACTTCATTGAGTTT
TCATTGGATCCCACCGTGAGGCATACTTGGTGGTCTCTGATCATTGGCGG
CATGGTCACTTACCTCTCCTTGTATGGCGTTAATCAAACGCAAGTACAGC
GACTCCTGAGTGTCCGCAATTTGAAGAGCGCTCAGTCGGCGCTTTGGTGG
AACCTGCCCATCCTAGGAATGCTTAGTTTTAGCACCATTTTCAGTGGACT
GTCCATATTCTACTATTATCGAGATTGTGACCCTTTGCTAAAGGGACGCA
TC
BS09055.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:19:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10444-PA | 1764 | CG10444-RA | 1..936 | 17..952 | 4680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:06:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10444-RA | 2790 | CG10444-RA | 260..1197 | 15..952 | 4690 | 100 | Plus |
| CG32669-RA | 2385 | CG32669-RA | 317..740 | 177..600 | 420 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:06:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20273303..20274240 | 952..15 | 4690 | 100 | Minus |
| X | 23542271 | X | 10844342..10844765 | 600..177 | 395 | 72.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:06:29 has no hits.
BS09055.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:57:55 Download gff for
BS09055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10444-PA | 1..936 | 17..952 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:03:43 Download gff for
BS09055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10444-PA | 1..936 | 17..952 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:45:19 Download gff for
BS09055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10444-RA | 255..1197 | 9..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:45:28 Download gff for
BS09055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10444-RA | 255..1197 | 9..952 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 12:45:28 Download gff for
BS09055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20273303..20274245 | 9..952 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:45:19 Download gff for
BS09055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16160808..16161750 | 9..952 | 99 | | Minus |
BS09055.3prime Sequence
858 bp (857 high quality bases) assembled on 2006-01-24
> BS09055.3prime
ATGGTCTAGAAAGCTTCTACTGCTCAGTTAGTTTGGTGAGCGTTTCGTCC
TGGGCAGTTTGGTCTTGTTCTTCTTTATGGCGTCGCCAGCGGCGGGACAG
CATGGGTGCGAAGAGATCGTAGTCCAGCTGCTTCCGAGACTTGTCCAAAT
AGATTTCCGCGTTTTCTGCCTTTCCACAGTGAGCCAGCACAATGCTGCTG
AAATAGCCGACGACCACGGCAATAAGAAAGCCGATGACGCTCAGCCACAA
GTAAGAAATTCGATATAACCAGAAGTAGTCGGGTTCGATGACCACTCCGC
TGCTCTTTGAGCTGAGCTCGATGGCACGCGCCATTACCGCGGTGGCATTC
TCACAGCCCGCTGTGCTAAACTCCAAGGTAACTGGCTTTGGTTTGGGTCC
GCCGAATCCCATCCAGAAGGAAACTATCAGGGAAACGAGGAAGCCAAGCA
GCACGCCTCTTTGGTTGCTGCGTGTAGTGCAGACTCCCAGTGTGAAAATG
GCCAGCAGCGGACCGCCTACCACACCGAAAATGGTAAGCGATGCCTGAAG
AACTCCGCCCATGGAGCCAGCGACAAAAGCTAGACCGATGCAAAGCAGGC
CAAAAATGCACGCCACAATCTTGGTGGGCATCGTGGACTTGGAGTCAATT
AGCGTCCGTTTAAATATCGCCTTGTACAAGGGCTTCAGGTAATCCTCCAG
TGTTACAGCCGACAGCGAGGTAACTGCCGACGAAATCGTGGAAAGACTGG
CGGAGAATATTCCGGACACGAACAGACCACACAGTCCAGGATATTGACCC
ATAGTCTCCAGTGCGAAAAGGGGCATGATCTGATCCCGCTTGTCGATGCG
TCCCTTTA
BS09055.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:19:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10444-PA | 1764 | CG10444-RA | 923..1764 | 858..17 | 4210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:38:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10444-RA | 2790 | CG10444-RA | 1184..2025 | 858..17 | 4210 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:37:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20272418..20273200 | 17..799 | 3915 | 100 | Plus |
| 2R | 25286936 | 2R | 20273255..20273316 | 797..858 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:38:01 has no hits.
BS09055.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:57:54 Download gff for
BS09055.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10444-PA | 924..1764 | 17..857 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:03:42 Download gff for
BS09055.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10444-PA | 924..1764 | 17..857 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:29:17 Download gff for
BS09055.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10444-RA | 1185..2025 | 17..857 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:20:19 Download gff for
BS09055.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10444-RA | 1185..2025 | 17..857 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:20:19 Download gff for
BS09055.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20272418..20273199 | 17..798 | 100 | <- | Plus |
| 2R | 20273257..20273315 | 799..857 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:29:17 Download gff for
BS09055.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16159923..16160704 | 17..798 | 100 | <- | Plus |
| arm_2R | 16160762..16160820 | 799..857 | 100 | | Plus |
BS09055.complete Sequence
1796 bp assembled on 2007-10-17
GenBank Submission: FJ636345
> BS09055.complete
GAAGTTATCAGTCGACATGCCCGTGGGAACGTTTGACGCCTGGGATGCGG
CCGTGCTGATCACCATCCTGGTCATATCGGCTCTGATTGGCATCTACTAC
CGGTATACAGGCGGCAAGCAAAAGACCACACAGGAGTATCTGATGGCGGA
CCAGAGCATGACCACTTTTCCGGTCTCCTTCAGCCTGATGGCAAGCTTCA
TGTCCGCCATCTCACTGATGGGCGTCTCCAACGAGTCCTACGAATTTGGT
ACCATCTTCTGTGTGATCAACATTGCCTACGTGCTGAGTACGCCCATTGC
CGCGTACTTCTTCCTTCCTGTTTTCTACAGGATGCGGACGACCAGTGTGT
ACGAGTATCTGGAGCGGCGCTTTGGCCAGGCCACCCGGCTGTCCGCCTCC
CTGGCCTTCACCGTGCAAATGGTGCTTTACATGGGCATTGCACTCTATGC
ACCAGCGCTCGCTTTAGAAGCTGTAACCGGCATTCATCGGTCAATGGCCA
TCGTGGTCATTGGACTGGTGTGCACCTTCTATTCGACACTTGGCGGCCTG
AAGGCGGTGCTCATCACGGATGTGTTTCAGTCCTTCCTCATGTTTGCCGC
CATCTACGCCGTGATTGCCGTGTCGGCCATTAAAGCCGGCGGATTCGCGG
CCATCTGGGATGTGGCTGTGGAGCGAGGACGCGTGAACTTCATTGAGTTT
TCATTGGATCCCACCGTGAGGCATACTTGGTGGTCTCTGATCATTGGCGG
CATGGTCACTTACCTCTCCTTGTATGGCGTTAATCAAACGCAAGTACAGC
GACTCCTGAGTGTCCGCAATTTGAAGAGCGCTCAGTCGGCGCTTTGGTGG
AACCTGCCCATCCTAGGAATGCTTAGTTTTAGCACCATTTTCAGTGGACT
GTCCATATTCTACTATTATCGAGATTGTGACCCTTTGCTAAAGGGACGCA
TCGACAAGCGGGATCAGATCATGCCCCTTTTCGCACTGGAGACTATGGGT
CAATATCCTGGACTGTGTGGTCTGTTCGTGTCCGGAATATTCTCCGCCAG
TCTTTCCACGATTTCGTCGGCAGTTACCTCGCTGTCGGCTGTAACACTGG
AGGATTACCTGAAGCCCTTGTACAAGGCGATATTTAAACGGACGCTAATT
GACTCCAAGTCCACGATGCCCACCAAGATTGTGGCGTGCATTTTTGGCCT
GCTTTGCATCGGTCTAGCTTTTGTCGCTGGCTCCATGGGCGGAGTTCTTC
AGGCATCGCTTACCATTTTCGGTGTGGTAGGCGGTCCGCTGCTGGCCATT
TTCACACTGGGAGTCTGCACTACACGCAGCAACCAAAGAGGCGTGCTGCT
TGGCTTCCTCGTTTCCCTGATAGTTTCCTTCTGGATGGGATTCGGCGGAC
CCAAACCAAAGCCAGTTACCTTGGAGTTTAGCACAGCGGGCTGTGAGAAT
GCCACCGCGGTAATGGCGCGTGCCATCGAGCTCAGCTCAAAGAGCAGCGG
AGTGGTCATCGAACCCGACTACTTCTGGTTATATCGAATTTCTTACTTGT
GGCTGAGCGTCATCGGCTTTCTTATTGCCGTGGTCGTCGGCTATTTCAGC
AGCATTGTGCTGGCTCACTGTGGAAAGGCAGAAAACGCGGAAATCTATTT
GGACAAGTCTCGGAAGCAGCTGGACTACGATCTCTTCGCACCCATGCTGT
CCCGCCGCTGGCGACGCCATAAAGAAGAACAAGACCAAACTGCCCAGGAC
GAAACGCTCACCAAACTAACTGAGCAGTAGAAGCTTTCTAGACCAT
BS09055.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:07:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10444-RA | 1764 | CG10444-PA | 1..1764 | 17..1780 | 8820 | 100 | Plus |
| CG32669-RA | 1815 | CG32669-PA | 155..578 | 177..600 | 395 | 72.9 | Plus |
| CG32669-RA | 1815 | CG32669-PA | 815..1098 | 837..1120 | 205 | 71.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:07:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10444-RA | 2790 | CG10444-RA | 260..2025 | 15..1780 | 8830 | 100 | Plus |
| CG32669-RA | 2385 | CG32669-RA | 317..740 | 177..600 | 395 | 72.9 | Plus |
| CG32669-RA | 2385 | CG32669-RA | 977..1260 | 837..1120 | 205 | 71.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:07:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20273255..20274240 | 1000..15 | 4930 | 100 | Minus |
| 2R | 25286936 | 2R | 20272418..20273200 | 1780..998 | 3915 | 100 | Minus |
| X | 23542271 | X | 10844342..10844765 | 600..177 | 395 | 72.9 | Minus |
| X | 23542271 | X | 10843822..10844105 | 1120..837 | 205 | 71.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:07:52 has no hits.
BS09055.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:57 Download gff for
BS09055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10444-RA | 1..1764 | 17..1780 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:39:55 Download gff for
BS09055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10444-RA | 281..2051 | 9..1780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:36 Download gff for
BS09055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10444-RA | 262..2025 | 17..1780 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:46 Download gff for
BS09055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10444-RA | 288..2051 | 17..1780 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:29 Download gff for
BS09055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10444-RA | 262..2025 | 17..1780 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:29 Download gff for
BS09055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20272418..20273199 | 999..1780 | 100 | <- | Minus |
| 2R | 20273257..20274238 | 17..998 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:36 Download gff for
BS09055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16159923..16160704 | 999..1780 | 100 | <- | Minus |
| arm_2R | 16160762..16161743 | 17..998 | 100 | | Minus |
BS09055.pep Sequence
Translation from 16 to 1779
> BS09055.pep
MPVGTFDAWDAAVLITILVISALIGIYYRYTGGKQKTTQEYLMADQSMTT
FPVSFSLMASFMSAISLMGVSNESYEFGTIFCVINIAYVLSTPIAAYFFL
PVFYRMRTTSVYEYLERRFGQATRLSASLAFTVQMVLYMGIALYAPALAL
EAVTGIHRSMAIVVIGLVCTFYSTLGGLKAVLITDVFQSFLMFAAIYAVI
AVSAIKAGGFAAIWDVAVERGRVNFIEFSLDPTVRHTWWSLIIGGMVTYL
SLYGVNQTQVQRLLSVRNLKSAQSALWWNLPILGMLSFSTIFSGLSIFYY
YRDCDPLLKGRIDKRDQIMPLFALETMGQYPGLCGLFVSGIFSASLSTIS
SAVTSLSAVTLEDYLKPLYKAIFKRTLIDSKSTMPTKIVACIFGLLCIGL
AFVAGSMGGVLQASLTIFGVVGGPLLAIFTLGVCTTRSNQRGVLLGFLVS
LIVSFWMGFGGPKPKPVTLEFSTAGCENATAVMARAIELSSKSSGVVIEP
DYFWLYRISYLWLSVIGFLIAVVVGYFSSIVLAHCGKAENAEIYLDKSRK
QLDYDLFAPMLSRRWRRHKEEQDQTAQDETLTKLTEQ*
BS09055.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10444-PA | 587 | CG10444-PA | 1..587 | 1..587 | 2977 | 100 | Plus |
| CG32669-PA | 604 | CG32669-PA | 1..565 | 3..569 | 1754 | 58.2 | Plus |
| CG9657-PB | 601 | CG9657-PB | 17..585 | 10..572 | 885 | 36.2 | Plus |
| CG9657-PA | 601 | CG9657-PA | 17..585 | 10..572 | 885 | 36.2 | Plus |
| CG5687-PB | 683 | CG5687-PB | 95..621 | 5..532 | 884 | 35.7 | Plus |
