Clone BS09056 Report

Search the DGRC for BS09056

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:90
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptNT5E-2-RA
Protein status:BS09056.pep: full length peptide match
Sequenced Size:1790

Clone Sequence Records

BS09056.complete Sequence

1790 bp assembled on 2009-12-07

GenBank Submission: KX803471

> BS09056.complete
GAAGTTATCAGTCGACATGCAGTCACGTTGGCTTTGCGGGATCTTCGTGA
TCGTCCTGGCCCATTGGACACGGGCCAATCCAATTTTGAGCCATCCCAAA
GTGGCCACCGAGTTCATCATCCTCCATAATAATGATATGCATGCCCGTTT
CGATCAGACGAGCGTTAATAGCGGCACCTGCCCACCGGAGGATGTACATA
CGAATAAATGCTATGGAGGATTCGCCAGGGTGGCCCACGAAGTTCGAAAG
TATCGTAAGGAGGCTCAGGAGGGCGGTACCTCCGTATTGTACTTAAATGC
TGGTGATACCTACACTGGAACCTCTTGGTTTACTATTTTCAAGGACAAAA
TCGCCAGTGCTTTCCTTAACAAATTGAAACCGGATGCTATATCCTTGGGC
AATCATGAGTTTGATGAGAGAGTAGAGGGTCTAATACCCTTCCTCAACGA
GGTCACCTTTCCTGTACTCGCCTGTAATCTGGACCTAAGCAAGGTTCCCC
AACTGAAGGCCACTTGGCACTTGGCTAACTCCGCCATTCTGGAGACCAAT
GGCACTAAGGTCGGTGTCATAGGTTATTTGACTCCAGATACCAAAAAACT
TACTCTCAACATGGATGTGGAGTTCAACGAGGAGGTGGAGTCCATTAATG
TTGAAGCAAAAAAACTGAAGGCACAGGGCATCAAAATCATTATCGCTCTT
GGCCACTCGGGTTATTTGAAGGATCTGGAGATAGCCAAGAACTGTCCGGA
GGTGGATATTGTCATTGGTGGCCATACGAACACCTTTCTCTACACCGGTG
CCCAGCCGGATGCGGAGCACATAGATGGACCGTATCCAACGATGGTCAAG
CAGAACAGTGGCAAGGAGGTTCCCGTTGTGCAGGCCTATGCGTATACCAA
ATATTTGGGAAAACTGCATGTACAGTTTGATGCCGATGGCAACCTCATCC
AGTGGGATGGATCTCCCATCCTGCTCAATGCTTCAGTGGCTCAGGAGCAG
GACCTTCTCGATCTATTGGAGGTCTTTCGTCCGAATGTCACCAGGCTGGA
GAAGTCGGTCGTCGGGCACACCAAGGTTCATCTGGAGGGCAACAAGGCGG
TTTGCCGGGCCGAGGAGTGCAACCTGGGCAATCTGATAGCCGATGCAATG
GTGTTTAGTCGCCTGATGGAGGAGCAGGGCGGTGATTTCTGGACAGATGC
TGCCATTTCTATAATGCAGGGCGGAGGCATTCGCAGCTCCATTGAAAAGC
GATCGGATGGCGCCATCACCGACAACGATATCCTTTCCGTTCTGCCCTGG
GGTAATAAGCTCTATATGGTGCCCATGACGGGTAGCACTATTCGTCGAGC
CTTAGAGCATGGAGCTGCCCTGAGAGGCAAAGATTCGGACGGTGGCTTCC
TGCAGGTGTCCGGAATCCGTGTGGTTTTCAATTCGAACAAGCCCGAGGGT
CAGCGAGTGGTTTCCGTGCAGGTTCGATGTGCCGCCTGCCGAGTGCCCAC
CTATAGTGATCTGAATGATACTGCCATCTACAATGTCGTCCTGGGAGAGT
TCCTGCTAGATGGTGGCGATGGACATGTAATGAGGGACTCAGCCCACCAA
CCACAGCGCCTGCAAAATAACGATCTCGAGGCGGTATCCCAATATCTGAA
CCAGCGTGACTATGTCTATCCCGAGATCGAGGGTCGTATTATTTTCATTA
ATGCATCCAGTACACTTATGGGCTCGGCAGCCCTGCTTCTTATCTCTTCC
CTTCTGATAAAAATTATTGCTTAAAAGCTTACTAGACCAT

BS09056.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:19:05
Subject Length Description Subject Range Query Range Score Percent Strand
NT5E-2-RA 1758 CG30104-PA 1..1758 17..1774 8790 100 Plus
NT5E-2-RB 1758 CG30104-PB 1..1758 17..1774 8790 100 Plus
veil-RB 1800 CG4827-PB 95..779 99..783 755 74 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
NT5E-2-RA 2062 CG30104-RA 134..1893 17..1776 8800 100 Plus
NT5E-2-RB 1960 CG30104-RB 32..1791 17..1776 8800 100 Plus
veil-RB 2220 CG4827-RB 334..1018 99..783 755 74 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:19:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17492449..17493000 1225..1776 2760 100 Plus
2R 25286936 2R 17492086..17492390 923..1227 1525 100 Plus
2R 25286936 2R 17491739..17492015 649..925 1385 100 Plus
2R 25286936 2R 17491425..17491681 392..648 1285 100 Plus
2R 25286936 2R 17490940..17491163 17..240 1120 100 Plus
2R 25286936 2R 17491215..17491365 241..391 755 100 Plus
2R 25286936 2R 17480663..17480785 661..783 285 82.1 Plus
2R 25286936 2R 17479918..17480053 99..234 275 80.1 Plus
2R 25286936 2R 17480121..17480248 245..372 235 78.9 Plus
2R 25286936 2R 17481201..17481314 1114..1227 195 78.1 Plus
Blast to na_te.dros performed on 2014-11-28 02:19:04 has no hits.

BS09056.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:15 Download gff for BS09056.complete
Subject Subject Range Query Range Percent Splice Strand
CG30104-RA 111..1866 17..1772 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:18 Download gff for BS09056.complete
Subject Subject Range Query Range Percent Splice Strand
NT5E-2-RB 32..1787 17..1772 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:18:40 Download gff for BS09056.complete
Subject Subject Range Query Range Percent Splice Strand
CG30104-RB 37..1792 17..1772 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:49 Download gff for BS09056.complete
Subject Subject Range Query Range Percent Splice Strand
NT5E-2-RB 32..1787 17..1772 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:49 Download gff for BS09056.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17490940..17491163 17..240 100 -> Plus
2R 17491215..17491365 241..391 100 -> Plus
2R 17491425..17491681 392..648 100 -> Plus
2R 17491739..17492015 649..925 100 -> Plus
2R 17492089..17492389 926..1226 100 -> Plus
2R 17492451..17492996 1227..1772 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:18 Download gff for BS09056.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13378445..13378668 17..240 100 -> Plus
arm_2R 13378720..13378870 241..391 100 -> Plus
arm_2R 13378930..13379186 392..648 100 -> Plus
arm_2R 13379244..13379520 649..925 100 -> Plus
arm_2R 13379594..13379894 926..1226 100 -> Plus
arm_2R 13379956..13380501 1227..1772 100   Plus

BS09056.3prime Sequence

949 bp (847 high quality bases) assembled on 2006-01-24

> BS09056.3prime
ATGGTCTAGTAAGCTTTTAAGCAATAATTTTTATCAGAAGGGAAGAGATA
AGAAGCAGGGCTGCCGAGCCCATAAGTGTACTGGATGCATTAATGAAAAT
AATACGACCCTCGATCTCGGGATAGACATAGTCACGCTGGTTCAGATATT
GGGATACCGCCTCGAGATCGTTATTTTGCAGGCGCTGTGGTTGGTGGGCT
GAGTCCCTCATTACATGTCCATCGCCACCATCTAGCAGGAACTCTCCCAG
GACGACATTGTAGATGGCAGTATCATTCAGATCACTATAGGTGGGCACTC
GGCAGGCGGCACATCGAACCTGCACGGAAACCACTCGCTGACCCTCGGGC
TTGTTCGAATTGAAAACCACACGGATTCCGGACACCTGCAGGAAGCCACC
GTCCGAATCTTTGCCTCTCAGGGCAGCTCCATGCTCTAAGGCTCGACGAA
TAGTGCTACCCGTCATGGGCACCATATAGAGCTTATTACCCCAGGGCAGA
ACGGAAAGGATATCGTTGTCGGTGATGGCGCCATCCGATCGCTTTTCAAT
GGAGCTGCGAATGCCTCCGCCCTGCATTATAGAAATGGCAGCATCTGTCC
AGAAATCACCGCCCTGCTCCTCCATCAGGCGACTAAACACCATTGCATCG
GCTATCAGATTGCCCAGGTTGCACTCCTCGGCCCGGCAAACCGCCTTGTT
GCCCTCCAGATGAACCTTGGTGTGCCCGACGACCGACTTCTCCAGCCTGG
TGACATTCGGACGAAAGACCTCCAATAGATCGAGAAGGTCCTGCTCCTGA
GCCACTGAAGCATTGAGCAGGATGGGAGATCCATCCCACTGGATGAGGTT
GCCATCGGCATCAAACTGTACATGCAGTTTTCCCAAATATTGGTATACGC
ATAGGGCTGCACAACGGGAACCTCCTGCCACTGTTCTGCTGGACCATCG

BS09056.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG30104-PB 1758 CG30104-RB 884..1758 891..17 4375 100 Minus
CG30104-PA 1758 CG30104-RA 884..1758 891..17 4375 100 Minus
CG30104-PB 1758 CG30104-RB 848..884 926..890 160 97.2 Minus
CG30104-PA 1758 CG30104-RA 848..884 926..890 160 97.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:35:59
Subject Length Description Subject Range Query Range Score Percent Strand
NT5E-2-RA 2062 CG30104-RA 957..1893 949..15 4605 99.6 Minus
NT5E-2-RB 1960 CG30104-RB 855..1791 949..15 4605 99.6 Minus
veil-RB 2220 CG4827-RB 1120..1490 923..551 280 72.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17492449..17493000 566..15 2760 100 Minus
2R 25286936 2R 17492086..17492390 868..564 1525 100 Minus
2R 25286936 2R 17491930..17492015 949..866 300 95.3 Minus
2R 25286936 2R 17481201..17481314 677..564 195 78.1 Minus
Blast to na_te.dros performed on 2015-02-03 08:35:55 has no hits.

BS09056.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:57:56 Download gff for BS09056.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30104-PA 824..1758 17..949 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:03:45 Download gff for BS09056.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30104-PA 824..1758 17..949 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:40:09 Download gff for BS09056.3prime
Subject Subject Range Query Range Percent Splice Strand
NT5E-2-RB 855..1791 15..949 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:54:31 Download gff for BS09056.3prime
Subject Subject Range Query Range Percent Splice Strand
NT5E-2-RB 855..1791 15..949 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:54:31 Download gff for BS09056.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17491930..17492015 866..949 95 -> Minus
2R 17492089..17492389 565..865 100 -> Minus
2R 17492451..17493000 15..564 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:40:09 Download gff for BS09056.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13379435..13379520 866..949 95 -> Minus
arm_2R 13379594..13379894 565..865 100 -> Minus
arm_2R 13379956..13380505 15..564 100   Minus

BS09056.5prime Sequence

933 bp (850 high quality bases) assembled on 2006-01-24

> BS09056.5prime
GAAGTTATCAGTCGACATGCAGTCACGTTGGCTTTGCGGGATCTTCGTGA
TCGTCCTGGCCCATTGGACACGGGCCAATCCAATTTTGAGCCATCCCAAA
GTGGCCACCGAGTTCATCATCCTCCATAATAATGATATGCATGCCCGTTT
CGATCAGACGAGCGTTAATAGCGGCACCTGCCCACCGGAGGATGTACATA
CGAATAAATGCTATGGAGGATTCGCCAGGGTGGCCCACGAAGTTCGAAAG
TATCGTAAGGAGGCTCAGGAGGGCGGTACCTCCGTATTGTACTTAAATGC
TGGTGATACCTACACTGGAACCTCTTGGTTTACTATTTTCAAGGACAAAA
TCGCCAGTGCTTTCCTTAACAAATTGAAACCGGATGCTATATCCTTGGGC
AATCATGAGTTTGATGAGAGAGTAGAGGGTCTAATACCCTTCCTCAACGA
GGTCACCTTTCCTGTACTCGCCTGTAATCTGGACCTAAGCAAGGTTCCCC
AACTGAAGGCCACTTGGCACTTGGCTAACTCCGCCATTCTGGAGACCAAT
GGCACTAAGGTCGGTGTCATAGGTTATTTGACTCCAGATACCAAAAAACT
TACTCTCAACATGGATGTGGAGTTCAACGAGGAGGTGGAGTCCATTAATG
TTGAAGCAAAAAAACTGAAGGCACAGGGCATCAAAATCATTATCGCTCTT
GGCCACTCGGGTTATTTGAAGGATCTGGAGATAGCCAAGAACTGTCCGGA
GGTGGATATTGTCATTGGTGGCCATACGAACACCTTTCTCTACACCGGTG
CCCAGCCGGATGCGGAGCACATAGATGGACCGTATCCAACGATGGTCAAG
CAGAACAGTGGCAAGGAGGTTCCCGTTGTGCAGGCCTATGCGTATACCAA
TATTTGGGAAAACTGCATGTACAGTTTGATGCC

BS09056.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:19:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG30104-PB 1758 CG30104-RB 1..884 17..900 4420 100 Plus
CG30104-PA 1758 CG30104-RA 1..884 17..900 4420 100 Plus
CG30104-PB 1758 CG30104-RB 884..918 899..933 175 100 Plus
CG30104-PA 1758 CG30104-RA 884..918 899..933 175 100 Plus
CG4827-PA 1800 CG4827-RA 715..771 719..775 160 91.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:30:01
Subject Length Description Subject Range Query Range Score Percent Strand
NT5E-2-RA 2062 CG30104-RA 134..1051 17..933 4565 99.9 Plus
NT5E-2-RB 1960 CG30104-RB 32..949 17..933 4565 99.9 Plus
veil-RB 2220 CG4827-RB 334..1018 99..783 770 74.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:29:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17491739..17492015 649..924 1335 99.6 Plus
2R 25286936 2R 17491425..17491681 392..648 1285 100 Plus
2R 25286936 2R 17490940..17491163 17..240 1120 100 Plus
2R 25286936 2R 17491215..17491365 241..391 755 100 Plus
2R 25286936 2R 17480663..17480785 661..783 285 82.1 Plus
2R 25286936 2R 17479918..17480053 99..234 275 80.1 Plus
2R 25286936 2R 17480121..17480248 245..372 235 78.9 Plus
Blast to na_te.dros performed on 2015-02-12 11:29:58 has no hits.

BS09056.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:57:57 Download gff for BS09056.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30104-PA 1..918 17..933 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:03:46 Download gff for BS09056.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30104-PA 1..918 17..933 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:24:24 Download gff for BS09056.5prime
Subject Subject Range Query Range Percent Splice Strand
NT5E-2-RB 27..949 10..933 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:48:15 Download gff for BS09056.5prime
Subject Subject Range Query Range Percent Splice Strand
NT5E-2-RB 27..949 10..933 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:48:15 Download gff for BS09056.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17490940..17491163 17..240 100 -> Plus
2R 17491215..17491365 241..391 100 -> Plus
2R 17491425..17491681 392..648 100 -> Plus
2R 17491739..17492021 649..932 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:24:24 Download gff for BS09056.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13378445..13378668 17..240 100 -> Plus
arm_2R 13378720..13378870 241..391 100 -> Plus
arm_2R 13378930..13379186 392..648 100 -> Plus
arm_2R 13379244..13379526 649..932 98   Plus

BS09056.pep Sequence

Translation from 16 to 1773

> BS09056.pep
MQSRWLCGIFVIVLAHWTRANPILSHPKVATEFIILHNNDMHARFDQTSV
NSGTCPPEDVHTNKCYGGFARVAHEVRKYRKEAQEGGTSVLYLNAGDTYT
GTSWFTIFKDKIASAFLNKLKPDAISLGNHEFDERVEGLIPFLNEVTFPV
LACNLDLSKVPQLKATWHLANSAILETNGTKVGVIGYLTPDTKKLTLNMD
VEFNEEVESINVEAKKLKAQGIKIIIALGHSGYLKDLEIAKNCPEVDIVI
GGHTNTFLYTGAQPDAEHIDGPYPTMVKQNSGKEVPVVQAYAYTKYLGKL
HVQFDADGNLIQWDGSPILLNASVAQEQDLLDLLEVFRPNVTRLEKSVVG
HTKVHLEGNKAVCRAEECNLGNLIADAMVFSRLMEEQGGDFWTDAAISIM
QGGGIRSSIEKRSDGAITDNDILSVLPWGNKLYMVPMTGSTIRRALEHGA
ALRGKDSDGGFLQVSGIRVVFNSNKPEGQRVVSVQVRCAACRVPTYSDLN
DTAIYNVVLGEFLLDGGDGHVMRDSAHQPQRLQNNDLEAVSQYLNQRDYV
YPEIEGRIIFINASSTLMGSAALLLISSLLIKIIA*

BS09056.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
NT5E-2-PA 585 CG30104-PA 1..585 1..585 3042 100 Plus
NT5E-2-PB 585 CG30104-PB 1..585 1..585 3042 100 Plus
veil-PB 599 CG4827-PB 17..599 13..584 1922 63.5 Plus
veil-PA 599 CG4827-PA 17..599 13..584 1922 63.5 Plus
CG30103-PA 584 CG30103-PA 26..550 32..557 1230 44.7 Plus