Clone Sequence Records
BS09056.complete Sequence
1790 bp assembled on 2009-12-07
GenBank Submission: KX803471
> BS09056.complete
GAAGTTATCAGTCGACATGCAGTCACGTTGGCTTTGCGGGATCTTCGTGA
TCGTCCTGGCCCATTGGACACGGGCCAATCCAATTTTGAGCCATCCCAAA
GTGGCCACCGAGTTCATCATCCTCCATAATAATGATATGCATGCCCGTTT
CGATCAGACGAGCGTTAATAGCGGCACCTGCCCACCGGAGGATGTACATA
CGAATAAATGCTATGGAGGATTCGCCAGGGTGGCCCACGAAGTTCGAAAG
TATCGTAAGGAGGCTCAGGAGGGCGGTACCTCCGTATTGTACTTAAATGC
TGGTGATACCTACACTGGAACCTCTTGGTTTACTATTTTCAAGGACAAAA
TCGCCAGTGCTTTCCTTAACAAATTGAAACCGGATGCTATATCCTTGGGC
AATCATGAGTTTGATGAGAGAGTAGAGGGTCTAATACCCTTCCTCAACGA
GGTCACCTTTCCTGTACTCGCCTGTAATCTGGACCTAAGCAAGGTTCCCC
AACTGAAGGCCACTTGGCACTTGGCTAACTCCGCCATTCTGGAGACCAAT
GGCACTAAGGTCGGTGTCATAGGTTATTTGACTCCAGATACCAAAAAACT
TACTCTCAACATGGATGTGGAGTTCAACGAGGAGGTGGAGTCCATTAATG
TTGAAGCAAAAAAACTGAAGGCACAGGGCATCAAAATCATTATCGCTCTT
GGCCACTCGGGTTATTTGAAGGATCTGGAGATAGCCAAGAACTGTCCGGA
GGTGGATATTGTCATTGGTGGCCATACGAACACCTTTCTCTACACCGGTG
CCCAGCCGGATGCGGAGCACATAGATGGACCGTATCCAACGATGGTCAAG
CAGAACAGTGGCAAGGAGGTTCCCGTTGTGCAGGCCTATGCGTATACCAA
ATATTTGGGAAAACTGCATGTACAGTTTGATGCCGATGGCAACCTCATCC
AGTGGGATGGATCTCCCATCCTGCTCAATGCTTCAGTGGCTCAGGAGCAG
GACCTTCTCGATCTATTGGAGGTCTTTCGTCCGAATGTCACCAGGCTGGA
GAAGTCGGTCGTCGGGCACACCAAGGTTCATCTGGAGGGCAACAAGGCGG
TTTGCCGGGCCGAGGAGTGCAACCTGGGCAATCTGATAGCCGATGCAATG
GTGTTTAGTCGCCTGATGGAGGAGCAGGGCGGTGATTTCTGGACAGATGC
TGCCATTTCTATAATGCAGGGCGGAGGCATTCGCAGCTCCATTGAAAAGC
GATCGGATGGCGCCATCACCGACAACGATATCCTTTCCGTTCTGCCCTGG
GGTAATAAGCTCTATATGGTGCCCATGACGGGTAGCACTATTCGTCGAGC
CTTAGAGCATGGAGCTGCCCTGAGAGGCAAAGATTCGGACGGTGGCTTCC
TGCAGGTGTCCGGAATCCGTGTGGTTTTCAATTCGAACAAGCCCGAGGGT
CAGCGAGTGGTTTCCGTGCAGGTTCGATGTGCCGCCTGCCGAGTGCCCAC
CTATAGTGATCTGAATGATACTGCCATCTACAATGTCGTCCTGGGAGAGT
TCCTGCTAGATGGTGGCGATGGACATGTAATGAGGGACTCAGCCCACCAA
CCACAGCGCCTGCAAAATAACGATCTCGAGGCGGTATCCCAATATCTGAA
CCAGCGTGACTATGTCTATCCCGAGATCGAGGGTCGTATTATTTTCATTA
ATGCATCCAGTACACTTATGGGCTCGGCAGCCCTGCTTCTTATCTCTTCC
CTTCTGATAAAAATTATTGCTTAAAAGCTTACTAGACCAT
BS09056.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:19:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NT5E-2-RA | 1758 | CG30104-PA | 1..1758 | 17..1774 | 8790 | 100 | Plus |
NT5E-2-RB | 1758 | CG30104-PB | 1..1758 | 17..1774 | 8790 | 100 | Plus |
veil-RB | 1800 | CG4827-PB | 95..779 | 99..783 | 755 | 74 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:19:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NT5E-2-RA | 2062 | CG30104-RA | 134..1893 | 17..1776 | 8800 | 100 | Plus |
NT5E-2-RB | 1960 | CG30104-RB | 32..1791 | 17..1776 | 8800 | 100 | Plus |
veil-RB | 2220 | CG4827-RB | 334..1018 | 99..783 | 755 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:19:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17492449..17493000 | 1225..1776 | 2760 | 100 | Plus |
2R | 25286936 | 2R | 17492086..17492390 | 923..1227 | 1525 | 100 | Plus |
2R | 25286936 | 2R | 17491739..17492015 | 649..925 | 1385 | 100 | Plus |
2R | 25286936 | 2R | 17491425..17491681 | 392..648 | 1285 | 100 | Plus |
2R | 25286936 | 2R | 17490940..17491163 | 17..240 | 1120 | 100 | Plus |
2R | 25286936 | 2R | 17491215..17491365 | 241..391 | 755 | 100 | Plus |
2R | 25286936 | 2R | 17480663..17480785 | 661..783 | 285 | 82.1 | Plus |
2R | 25286936 | 2R | 17479918..17480053 | 99..234 | 275 | 80.1 | Plus |
2R | 25286936 | 2R | 17480121..17480248 | 245..372 | 235 | 78.9 | Plus |
2R | 25286936 | 2R | 17481201..17481314 | 1114..1227 | 195 | 78.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:19:04 has no hits.
BS09056.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:15 Download gff for
BS09056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30104-RA | 111..1866 | 17..1772 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:18 Download gff for
BS09056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NT5E-2-RB | 32..1787 | 17..1772 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:18:40 Download gff for
BS09056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30104-RB | 37..1792 | 17..1772 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:49 Download gff for
BS09056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NT5E-2-RB | 32..1787 | 17..1772 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:49 Download gff for
BS09056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17490940..17491163 | 17..240 | 100 | -> | Plus |
2R | 17491215..17491365 | 241..391 | 100 | -> | Plus |
2R | 17491425..17491681 | 392..648 | 100 | -> | Plus |
2R | 17491739..17492015 | 649..925 | 100 | -> | Plus |
2R | 17492089..17492389 | 926..1226 | 100 | -> | Plus |
2R | 17492451..17492996 | 1227..1772 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:18 Download gff for
BS09056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13378445..13378668 | 17..240 | 100 | -> | Plus |
arm_2R | 13378720..13378870 | 241..391 | 100 | -> | Plus |
arm_2R | 13378930..13379186 | 392..648 | 100 | -> | Plus |
arm_2R | 13379244..13379520 | 649..925 | 100 | -> | Plus |
arm_2R | 13379594..13379894 | 926..1226 | 100 | -> | Plus |
arm_2R | 13379956..13380501 | 1227..1772 | 100 | | Plus |
BS09056.3prime Sequence
949 bp (847 high quality bases) assembled on 2006-01-24
> BS09056.3prime
ATGGTCTAGTAAGCTTTTAAGCAATAATTTTTATCAGAAGGGAAGAGATA
AGAAGCAGGGCTGCCGAGCCCATAAGTGTACTGGATGCATTAATGAAAAT
AATACGACCCTCGATCTCGGGATAGACATAGTCACGCTGGTTCAGATATT
GGGATACCGCCTCGAGATCGTTATTTTGCAGGCGCTGTGGTTGGTGGGCT
GAGTCCCTCATTACATGTCCATCGCCACCATCTAGCAGGAACTCTCCCAG
GACGACATTGTAGATGGCAGTATCATTCAGATCACTATAGGTGGGCACTC
GGCAGGCGGCACATCGAACCTGCACGGAAACCACTCGCTGACCCTCGGGC
TTGTTCGAATTGAAAACCACACGGATTCCGGACACCTGCAGGAAGCCACC
GTCCGAATCTTTGCCTCTCAGGGCAGCTCCATGCTCTAAGGCTCGACGAA
TAGTGCTACCCGTCATGGGCACCATATAGAGCTTATTACCCCAGGGCAGA
ACGGAAAGGATATCGTTGTCGGTGATGGCGCCATCCGATCGCTTTTCAAT
GGAGCTGCGAATGCCTCCGCCCTGCATTATAGAAATGGCAGCATCTGTCC
AGAAATCACCGCCCTGCTCCTCCATCAGGCGACTAAACACCATTGCATCG
GCTATCAGATTGCCCAGGTTGCACTCCTCGGCCCGGCAAACCGCCTTGTT
GCCCTCCAGATGAACCTTGGTGTGCCCGACGACCGACTTCTCCAGCCTGG
TGACATTCGGACGAAAGACCTCCAATAGATCGAGAAGGTCCTGCTCCTGA
GCCACTGAAGCATTGAGCAGGATGGGAGATCCATCCCACTGGATGAGGTT
GCCATCGGCATCAAACTGTACATGCAGTTTTCCCAAATATTGGTATACGC
ATAGGGCTGCACAACGGGAACCTCCTGCCACTGTTCTGCTGGACCATCG
BS09056.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:19:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30104-PB | 1758 | CG30104-RB | 884..1758 | 891..17 | 4375 | 100 | Minus |
CG30104-PA | 1758 | CG30104-RA | 884..1758 | 891..17 | 4375 | 100 | Minus |
CG30104-PB | 1758 | CG30104-RB | 848..884 | 926..890 | 160 | 97.2 | Minus |
CG30104-PA | 1758 | CG30104-RA | 848..884 | 926..890 | 160 | 97.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:35:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NT5E-2-RA | 2062 | CG30104-RA | 957..1893 | 949..15 | 4605 | 99.6 | Minus |
NT5E-2-RB | 1960 | CG30104-RB | 855..1791 | 949..15 | 4605 | 99.6 | Minus |
veil-RB | 2220 | CG4827-RB | 1120..1490 | 923..551 | 280 | 72.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:35:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17492449..17493000 | 566..15 | 2760 | 100 | Minus |
2R | 25286936 | 2R | 17492086..17492390 | 868..564 | 1525 | 100 | Minus |
2R | 25286936 | 2R | 17491930..17492015 | 949..866 | 300 | 95.3 | Minus |
2R | 25286936 | 2R | 17481201..17481314 | 677..564 | 195 | 78.1 | Minus |
Blast to na_te.dros performed on 2015-02-03 08:35:55 has no hits.
BS09056.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:57:56 Download gff for
BS09056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30104-PA | 824..1758 | 17..949 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:03:45 Download gff for
BS09056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30104-PA | 824..1758 | 17..949 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:40:09 Download gff for
BS09056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NT5E-2-RB | 855..1791 | 15..949 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:54:31 Download gff for
BS09056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NT5E-2-RB | 855..1791 | 15..949 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:54:31 Download gff for
BS09056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17491930..17492015 | 866..949 | 95 | -> | Minus |
2R | 17492089..17492389 | 565..865 | 100 | -> | Minus |
2R | 17492451..17493000 | 15..564 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:40:09 Download gff for
BS09056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13379435..13379520 | 866..949 | 95 | -> | Minus |
arm_2R | 13379594..13379894 | 565..865 | 100 | -> | Minus |
arm_2R | 13379956..13380505 | 15..564 | 100 | | Minus |
BS09056.5prime Sequence
933 bp (850 high quality bases) assembled on 2006-01-24
> BS09056.5prime
GAAGTTATCAGTCGACATGCAGTCACGTTGGCTTTGCGGGATCTTCGTGA
TCGTCCTGGCCCATTGGACACGGGCCAATCCAATTTTGAGCCATCCCAAA
GTGGCCACCGAGTTCATCATCCTCCATAATAATGATATGCATGCCCGTTT
CGATCAGACGAGCGTTAATAGCGGCACCTGCCCACCGGAGGATGTACATA
CGAATAAATGCTATGGAGGATTCGCCAGGGTGGCCCACGAAGTTCGAAAG
TATCGTAAGGAGGCTCAGGAGGGCGGTACCTCCGTATTGTACTTAAATGC
TGGTGATACCTACACTGGAACCTCTTGGTTTACTATTTTCAAGGACAAAA
TCGCCAGTGCTTTCCTTAACAAATTGAAACCGGATGCTATATCCTTGGGC
AATCATGAGTTTGATGAGAGAGTAGAGGGTCTAATACCCTTCCTCAACGA
GGTCACCTTTCCTGTACTCGCCTGTAATCTGGACCTAAGCAAGGTTCCCC
AACTGAAGGCCACTTGGCACTTGGCTAACTCCGCCATTCTGGAGACCAAT
GGCACTAAGGTCGGTGTCATAGGTTATTTGACTCCAGATACCAAAAAACT
TACTCTCAACATGGATGTGGAGTTCAACGAGGAGGTGGAGTCCATTAATG
TTGAAGCAAAAAAACTGAAGGCACAGGGCATCAAAATCATTATCGCTCTT
GGCCACTCGGGTTATTTGAAGGATCTGGAGATAGCCAAGAACTGTCCGGA
GGTGGATATTGTCATTGGTGGCCATACGAACACCTTTCTCTACACCGGTG
CCCAGCCGGATGCGGAGCACATAGATGGACCGTATCCAACGATGGTCAAG
CAGAACAGTGGCAAGGAGGTTCCCGTTGTGCAGGCCTATGCGTATACCAA
TATTTGGGAAAACTGCATGTACAGTTTGATGCC
BS09056.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:19:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30104-PB | 1758 | CG30104-RB | 1..884 | 17..900 | 4420 | 100 | Plus |
CG30104-PA | 1758 | CG30104-RA | 1..884 | 17..900 | 4420 | 100 | Plus |
CG30104-PB | 1758 | CG30104-RB | 884..918 | 899..933 | 175 | 100 | Plus |
CG30104-PA | 1758 | CG30104-RA | 884..918 | 899..933 | 175 | 100 | Plus |
CG4827-PA | 1800 | CG4827-RA | 715..771 | 719..775 | 160 | 91.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:30:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NT5E-2-RA | 2062 | CG30104-RA | 134..1051 | 17..933 | 4565 | 99.9 | Plus |
NT5E-2-RB | 1960 | CG30104-RB | 32..949 | 17..933 | 4565 | 99.9 | Plus |
veil-RB | 2220 | CG4827-RB | 334..1018 | 99..783 | 770 | 74.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:29:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17491739..17492015 | 649..924 | 1335 | 99.6 | Plus |
2R | 25286936 | 2R | 17491425..17491681 | 392..648 | 1285 | 100 | Plus |
2R | 25286936 | 2R | 17490940..17491163 | 17..240 | 1120 | 100 | Plus |
2R | 25286936 | 2R | 17491215..17491365 | 241..391 | 755 | 100 | Plus |
2R | 25286936 | 2R | 17480663..17480785 | 661..783 | 285 | 82.1 | Plus |
2R | 25286936 | 2R | 17479918..17480053 | 99..234 | 275 | 80.1 | Plus |
2R | 25286936 | 2R | 17480121..17480248 | 245..372 | 235 | 78.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:29:58 has no hits.
BS09056.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:57:57 Download gff for
BS09056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30104-PA | 1..918 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:03:46 Download gff for
BS09056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30104-PA | 1..918 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:24:24 Download gff for
BS09056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NT5E-2-RB | 27..949 | 10..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:48:15 Download gff for
BS09056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NT5E-2-RB | 27..949 | 10..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:48:15 Download gff for
BS09056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17490940..17491163 | 17..240 | 100 | -> | Plus |
2R | 17491215..17491365 | 241..391 | 100 | -> | Plus |
2R | 17491425..17491681 | 392..648 | 100 | -> | Plus |
2R | 17491739..17492021 | 649..932 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:24:24 Download gff for
BS09056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13378445..13378668 | 17..240 | 100 | -> | Plus |
arm_2R | 13378720..13378870 | 241..391 | 100 | -> | Plus |
arm_2R | 13378930..13379186 | 392..648 | 100 | -> | Plus |
arm_2R | 13379244..13379526 | 649..932 | 98 | | Plus |
BS09056.pep Sequence
Translation from 16 to 1773
> BS09056.pep
MQSRWLCGIFVIVLAHWTRANPILSHPKVATEFIILHNNDMHARFDQTSV
NSGTCPPEDVHTNKCYGGFARVAHEVRKYRKEAQEGGTSVLYLNAGDTYT
GTSWFTIFKDKIASAFLNKLKPDAISLGNHEFDERVEGLIPFLNEVTFPV
LACNLDLSKVPQLKATWHLANSAILETNGTKVGVIGYLTPDTKKLTLNMD
VEFNEEVESINVEAKKLKAQGIKIIIALGHSGYLKDLEIAKNCPEVDIVI
GGHTNTFLYTGAQPDAEHIDGPYPTMVKQNSGKEVPVVQAYAYTKYLGKL
HVQFDADGNLIQWDGSPILLNASVAQEQDLLDLLEVFRPNVTRLEKSVVG
HTKVHLEGNKAVCRAEECNLGNLIADAMVFSRLMEEQGGDFWTDAAISIM
QGGGIRSSIEKRSDGAITDNDILSVLPWGNKLYMVPMTGSTIRRALEHGA
ALRGKDSDGGFLQVSGIRVVFNSNKPEGQRVVSVQVRCAACRVPTYSDLN
DTAIYNVVLGEFLLDGGDGHVMRDSAHQPQRLQNNDLEAVSQYLNQRDYV
YPEIEGRIIFINASSTLMGSAALLLISSLLIKIIA*
BS09056.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:51:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NT5E-2-PA | 585 | CG30104-PA | 1..585 | 1..585 | 3042 | 100 | Plus |
NT5E-2-PB | 585 | CG30104-PB | 1..585 | 1..585 | 3042 | 100 | Plus |
veil-PB | 599 | CG4827-PB | 17..599 | 13..584 | 1922 | 63.5 | Plus |
veil-PA | 599 | CG4827-PA | 17..599 | 13..584 | 1922 | 63.5 | Plus |
CG30103-PA | 584 | CG30103-PA | 26..550 | 32..557 | 1230 | 44.7 | Plus |