Clone Sequence Records
BS09074.3prime Sequence
519 bp (518 high quality bases) assembled on 2006-01-24
> BS09074.3prime
ATGGTCTAGAAAGCTTCTACTGCGTGTAGTCGGTGTCGCCCTTCGAATAG
TGTATGCAAGCCAACACGGTGTCCAGCAGGTACAGTGCGCCCTCGATAAC
GCACAGCGAGCCCATGGCAATGCCCACTTGACGCTCCGAGTTCACATACA
GGAATCCCTCGTCGGACATGTAACCCTTCCAGTAGTGGAGTGCCACTCCG
CCCACGGCGATCCACATGATGCAGCCAACCACGTTCATGATGGTGTCGCA
CAGCTCTCCCTTATGTTTGGTTGTGCCGAAGGCAAAGGCAATGGTGTGGC
ATCCAGTGTAAATCAAGAATCCAACCATGACGCCTGAGGCTACGATTTCC
GCATCGGCGCTCTTCTCCTCGTTTAAGTTCCACGTGCCGCCGATGCCCAG
GAATTCGCCACCATCGCCCCAACGGTACAAGAAGATGATCACCAGATTGA
TGATCAGCTTCAGGGCCTTGATGAAAATAGAGCCTACAGTCTCCACGGAC
ACCATGTCGACTGATAACT
BS09074.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:19:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6981-PB | 489 | CG6981-RB | 1..489 | 505..17 | 2445 | 100 | Minus |
CG6981-PA | 489 | CG6981-RA | 1..489 | 505..17 | 2445 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:37:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssk-RA | 837 | CG6981-RA | 126..620 | 509..15 | 2460 | 99.8 | Minus |
Ssk-RB | 898 | CG6981-RB | 187..681 | 509..15 | 2460 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:37:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20189319..20189562 | 258..15 | 1220 | 100 | Minus |
3L | 28110227 | 3L | 20188991..20189188 | 455..258 | 990 | 100 | Minus |
3L | 28110227 | 3L | 20188708..20188762 | 509..455 | 260 | 98.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:37:04 has no hits.
BS09074.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:58:27 Download gff for
BS09074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6981-PA | 1..489 | 17..505 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:04:30 Download gff for
BS09074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6981-PA | 1..489 | 17..505 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:29:04 Download gff for
BS09074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssk-RB | 174..690 | 6..519 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:12 Download gff for
BS09074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssk-RB | 174..690 | 6..519 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:12 Download gff for
BS09074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20188695..20188762 | 455..519 | 92 | -> | Minus |
3L | 20188992..20189188 | 258..454 | 100 | -> | Minus |
3L | 20189320..20189571 | 6..257 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:29:04 Download gff for
BS09074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20181795..20181862 | 455..519 | 92 | -> | Minus |
arm_3L | 20182092..20182288 | 258..454 | 100 | -> | Minus |
arm_3L | 20182420..20182671 | 6..257 | 98 | | Minus |
BS09074.5prime Sequence
519 bp (518 high quality bases) assembled on 2006-01-24
> BS09074.5prime
GAAGTTATCAGTCGACATGGTGTCCGTGGAGACTGTAGGCTCTATTTTCA
TCAAGGCCCTGAAGCTGATCATCAATCTGGTGATCATCTTCTTGTACCGT
TGGGGCGATGGTGGCGAATTCCTGGGCATCGGCGGCACGTGGAACTTAAA
CGAGGAGAAGAGCGCCGATGCGGAAATCGTAGCCTCAGGCGTCATGGTTG
GATTCTTGATTTACACTGGATGCCACACCATTGCCTTTGCCTTCGGCACA
ACCAAACATAAGGGAGAGCTGTGCGACACCATCATGAACGTGGTTGGCTG
CATCATGTGGATCGCCGTGGGCGGAGTGGCACTCCACTACTGGAAGGGTT
ACATGTCCGACGAGGGATTCCTGTATGTGAACTCGGAGCGTCAAGTGGGC
ATTGCCATGGGCTCGCTGTGCGTTATCGAGGGCGCACTGTACCTGCTGGA
CACCGTGTTGGCTTGCATACACTATTCGAAGGGCGACACCGACTACACGC
AGTAGAAGCTTTCTAGACC
BS09074.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:19:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6981-PB | 489 | CG6981-RB | 1..489 | 17..505 | 2445 | 100 | Plus |
CG6981-PA | 489 | CG6981-RA | 1..489 | 17..505 | 2445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:08:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssk-RA | 837 | CG6981-RA | 126..620 | 13..507 | 2460 | 99.8 | Plus |
Ssk-RB | 898 | CG6981-RB | 187..681 | 13..507 | 2460 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:08:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20189319..20189562 | 264..507 | 1220 | 100 | Plus |
3L | 28110227 | 3L | 20188991..20189188 | 67..264 | 990 | 100 | Plus |
3L | 28110227 | 3L | 20188708..20188762 | 13..67 | 260 | 98.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:08:49 has no hits.
BS09074.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:58:28 Download gff for
BS09074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6981-PA | 1..489 | 17..505 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:04:32 Download gff for
BS09074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6981-PA | 1..489 | 17..505 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:28:11 Download gff for
BS09074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssk-RB | 178..690 | 6..516 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:25:16 Download gff for
BS09074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssk-RB | 178..690 | 6..516 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:25:16 Download gff for
BS09074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20188699..20188762 | 6..67 | 95 | -> | Plus |
3L | 20188992..20189188 | 68..264 | 100 | -> | Plus |
3L | 20189320..20189571 | 265..516 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:28:11 Download gff for
BS09074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20181799..20181862 | 6..67 | 95 | -> | Plus |
arm_3L | 20182092..20182288 | 68..264 | 100 | -> | Plus |
arm_3L | 20182420..20182671 | 265..516 | 98 | | Plus |
BS09074.complete Sequence
521 bp (521 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636346
> BS09074.complete
GAAGTTATCAGTCGACATGGTGTCCGTGGAGACTGTAGGCTCTATTTTCA
TCAAGGCCCTGAAGCTGATCATCAATCTGGTGATCATCTTCTTGTACCGT
TGGGGCGATGGTGGCGAATTCCTGGGCATCGGCGGCACGTGGAACTTAAA
CGAGGAGAAGAGCGCCGATGCGGAAATCGTAGCCTCAGGCGTCATGGTTG
GATTCTTGATTTACACTGGATGCCACACCATTGCCTTTGCCTTCGGCACA
ACCAAACATAAGGGAGAGCTGTGCGACACCATCATGAACGTGGTTGGCTG
CATCATGTGGATCGCCGTGGGCGGAGTGGCACTCCACTACTGGAAGGGTT
ACATGTCCGACGAGGGATTCCTGTATGTGAACTCGGAGCGTCAAGTGGGC
ATTGCCATGGGCTCGCTGTGCGTTATCGAGGGCGCACTGTACCTGCTGGA
CACCGTGTTGGCTTGCATACACTATTCGAAGGGCGACACCGACTACACGC
AGTAGAAGCTTTCTAGACCAT
BS09074.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:02:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssk-RA | 489 | CG6981-PA | 1..489 | 17..505 | 2445 | 100 | Plus |
Ssk-RB | 489 | CG6981-PB | 1..489 | 17..505 | 2445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:02:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssk-RA | 837 | CG6981-RA | 126..620 | 13..507 | 2460 | 99.8 | Plus |
Ssk-RB | 898 | CG6981-RB | 187..681 | 13..507 | 2460 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:02:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20189319..20189562 | 264..507 | 1220 | 100 | Plus |
3L | 28110227 | 3L | 20188991..20189188 | 67..264 | 990 | 100 | Plus |
3L | 28110227 | 3L | 20188708..20188762 | 13..67 | 260 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:02:35 has no hits.
BS09074.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:20 Download gff for
BS09074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6981-RA | 1..489 | 17..505 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:04 Download gff for
BS09074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6981-RB | 158..670 | 6..516 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:15 Download gff for
BS09074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssk-RB | 191..679 | 17..505 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:21 Download gff for
BS09074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6981-RB | 158..670 | 6..516 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:31 Download gff for
BS09074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssk-RB | 191..679 | 17..505 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:31 Download gff for
BS09074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20188712..20188762 | 17..67 | 100 | -> | Plus |
3L | 20188992..20189188 | 68..264 | 100 | -> | Plus |
3L | 20189320..20189560 | 265..505 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:15 Download gff for
BS09074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20181812..20181862 | 17..67 | 100 | -> | Plus |
arm_3L | 20182092..20182288 | 68..264 | 100 | -> | Plus |
arm_3L | 20182420..20182660 | 265..505 | 100 | | Plus |
BS09074.pep Sequence
Translation from 16 to 504
> BS09074.pep
MVSVETVGSIFIKALKLIINLVIIFLYRWGDGGEFLGIGGTWNLNEEKSA
DAEIVASGVMVGFLIYTGCHTIAFAFGTTKHKGELCDTIMNVVGCIMWIA
VGGVALHYWKGYMSDEGFLYVNSERQVGIAMGSLCVIEGALYLLDTVLAC
IHYSKGDTDYTQ*
BS09074.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:43:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssk-PA | 162 | CG6981-PA | 1..162 | 1..162 | 857 | 100 | Plus |
Ssk-PB | 162 | CG6981-PB | 1..162 | 1..162 | 857 | 100 | Plus |