Clone BS09074 Report

Search the DGRC for BS09074

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:90
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptSsk-RA
Protein status:BS09074.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09074.3prime Sequence

519 bp (518 high quality bases) assembled on 2006-01-24

> BS09074.3prime
ATGGTCTAGAAAGCTTCTACTGCGTGTAGTCGGTGTCGCCCTTCGAATAG
TGTATGCAAGCCAACACGGTGTCCAGCAGGTACAGTGCGCCCTCGATAAC
GCACAGCGAGCCCATGGCAATGCCCACTTGACGCTCCGAGTTCACATACA
GGAATCCCTCGTCGGACATGTAACCCTTCCAGTAGTGGAGTGCCACTCCG
CCCACGGCGATCCACATGATGCAGCCAACCACGTTCATGATGGTGTCGCA
CAGCTCTCCCTTATGTTTGGTTGTGCCGAAGGCAAAGGCAATGGTGTGGC
ATCCAGTGTAAATCAAGAATCCAACCATGACGCCTGAGGCTACGATTTCC
GCATCGGCGCTCTTCTCCTCGTTTAAGTTCCACGTGCCGCCGATGCCCAG
GAATTCGCCACCATCGCCCCAACGGTACAAGAAGATGATCACCAGATTGA
TGATCAGCTTCAGGGCCTTGATGAAAATAGAGCCTACAGTCTCCACGGAC
ACCATGTCGACTGATAACT

BS09074.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:19:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG6981-PB 489 CG6981-RB 1..489 505..17 2445 100 Minus
CG6981-PA 489 CG6981-RA 1..489 505..17 2445 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
Ssk-RA 837 CG6981-RA 126..620 509..15 2460 99.8 Minus
Ssk-RB 898 CG6981-RB 187..681 509..15 2460 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20189319..20189562 258..15 1220 100 Minus
3L 28110227 3L 20188991..20189188 455..258 990 100 Minus
3L 28110227 3L 20188708..20188762 509..455 260 98.2 Minus
Blast to na_te.dros performed on 2015-02-11 17:37:04 has no hits.

BS09074.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:58:27 Download gff for BS09074.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6981-PA 1..489 17..505 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:04:30 Download gff for BS09074.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6981-PA 1..489 17..505 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:29:04 Download gff for BS09074.3prime
Subject Subject Range Query Range Percent Splice Strand
Ssk-RB 174..690 6..519 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:12 Download gff for BS09074.3prime
Subject Subject Range Query Range Percent Splice Strand
Ssk-RB 174..690 6..519 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:12 Download gff for BS09074.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20188695..20188762 455..519 92 -> Minus
3L 20188992..20189188 258..454 100 -> Minus
3L 20189320..20189571 6..257 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:29:04 Download gff for BS09074.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20181795..20181862 455..519 92 -> Minus
arm_3L 20182092..20182288 258..454 100 -> Minus
arm_3L 20182420..20182671 6..257 98   Minus

BS09074.5prime Sequence

519 bp (518 high quality bases) assembled on 2006-01-24

> BS09074.5prime
GAAGTTATCAGTCGACATGGTGTCCGTGGAGACTGTAGGCTCTATTTTCA
TCAAGGCCCTGAAGCTGATCATCAATCTGGTGATCATCTTCTTGTACCGT
TGGGGCGATGGTGGCGAATTCCTGGGCATCGGCGGCACGTGGAACTTAAA
CGAGGAGAAGAGCGCCGATGCGGAAATCGTAGCCTCAGGCGTCATGGTTG
GATTCTTGATTTACACTGGATGCCACACCATTGCCTTTGCCTTCGGCACA
ACCAAACATAAGGGAGAGCTGTGCGACACCATCATGAACGTGGTTGGCTG
CATCATGTGGATCGCCGTGGGCGGAGTGGCACTCCACTACTGGAAGGGTT
ACATGTCCGACGAGGGATTCCTGTATGTGAACTCGGAGCGTCAAGTGGGC
ATTGCCATGGGCTCGCTGTGCGTTATCGAGGGCGCACTGTACCTGCTGGA
CACCGTGTTGGCTTGCATACACTATTCGAAGGGCGACACCGACTACACGC
AGTAGAAGCTTTCTAGACC

BS09074.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:19:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG6981-PB 489 CG6981-RB 1..489 17..505 2445 100 Plus
CG6981-PA 489 CG6981-RA 1..489 17..505 2445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
Ssk-RA 837 CG6981-RA 126..620 13..507 2460 99.8 Plus
Ssk-RB 898 CG6981-RB 187..681 13..507 2460 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:08:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20189319..20189562 264..507 1220 100 Plus
3L 28110227 3L 20188991..20189188 67..264 990 100 Plus
3L 28110227 3L 20188708..20188762 13..67 260 98.2 Plus
Blast to na_te.dros performed on 2015-02-10 23:08:49 has no hits.

BS09074.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:58:28 Download gff for BS09074.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6981-PA 1..489 17..505 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:04:32 Download gff for BS09074.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6981-PA 1..489 17..505 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:28:11 Download gff for BS09074.5prime
Subject Subject Range Query Range Percent Splice Strand
Ssk-RB 178..690 6..516 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:25:16 Download gff for BS09074.5prime
Subject Subject Range Query Range Percent Splice Strand
Ssk-RB 178..690 6..516 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:25:16 Download gff for BS09074.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20188699..20188762 6..67 95 -> Plus
3L 20188992..20189188 68..264 100 -> Plus
3L 20189320..20189571 265..516 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:28:11 Download gff for BS09074.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20181799..20181862 6..67 95 -> Plus
arm_3L 20182092..20182288 68..264 100 -> Plus
arm_3L 20182420..20182671 265..516 98   Plus

BS09074.complete Sequence

521 bp (521 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636346

> BS09074.complete
GAAGTTATCAGTCGACATGGTGTCCGTGGAGACTGTAGGCTCTATTTTCA
TCAAGGCCCTGAAGCTGATCATCAATCTGGTGATCATCTTCTTGTACCGT
TGGGGCGATGGTGGCGAATTCCTGGGCATCGGCGGCACGTGGAACTTAAA
CGAGGAGAAGAGCGCCGATGCGGAAATCGTAGCCTCAGGCGTCATGGTTG
GATTCTTGATTTACACTGGATGCCACACCATTGCCTTTGCCTTCGGCACA
ACCAAACATAAGGGAGAGCTGTGCGACACCATCATGAACGTGGTTGGCTG
CATCATGTGGATCGCCGTGGGCGGAGTGGCACTCCACTACTGGAAGGGTT
ACATGTCCGACGAGGGATTCCTGTATGTGAACTCGGAGCGTCAAGTGGGC
ATTGCCATGGGCTCGCTGTGCGTTATCGAGGGCGCACTGTACCTGCTGGA
CACCGTGTTGGCTTGCATACACTATTCGAAGGGCGACACCGACTACACGC
AGTAGAAGCTTTCTAGACCAT

BS09074.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
Ssk-RA 489 CG6981-PA 1..489 17..505 2445 100 Plus
Ssk-RB 489 CG6981-PB 1..489 17..505 2445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
Ssk-RA 837 CG6981-RA 126..620 13..507 2460 99.8 Plus
Ssk-RB 898 CG6981-RB 187..681 13..507 2460 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20189319..20189562 264..507 1220 100 Plus
3L 28110227 3L 20188991..20189188 67..264 990 100 Plus
3L 28110227 3L 20188708..20188762 13..67 260 98.2 Plus
Blast to na_te.dros performed on 2014-11-27 07:02:35 has no hits.

BS09074.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:20 Download gff for BS09074.complete
Subject Subject Range Query Range Percent Splice Strand
CG6981-RA 1..489 17..505 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:04 Download gff for BS09074.complete
Subject Subject Range Query Range Percent Splice Strand
CG6981-RB 158..670 6..516 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:15 Download gff for BS09074.complete
Subject Subject Range Query Range Percent Splice Strand
Ssk-RB 191..679 17..505 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:21 Download gff for BS09074.complete
Subject Subject Range Query Range Percent Splice Strand
CG6981-RB 158..670 6..516 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:31 Download gff for BS09074.complete
Subject Subject Range Query Range Percent Splice Strand
Ssk-RB 191..679 17..505 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:31 Download gff for BS09074.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20188712..20188762 17..67 100 -> Plus
3L 20188992..20189188 68..264 100 -> Plus
3L 20189320..20189560 265..505 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:15 Download gff for BS09074.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20181812..20181862 17..67 100 -> Plus
arm_3L 20182092..20182288 68..264 100 -> Plus
arm_3L 20182420..20182660 265..505 100   Plus

BS09074.pep Sequence

Translation from 16 to 504

> BS09074.pep
MVSVETVGSIFIKALKLIINLVIIFLYRWGDGGEFLGIGGTWNLNEEKSA
DAEIVASGVMVGFLIYTGCHTIAFAFGTTKHKGELCDTIMNVVGCIMWIA
VGGVALHYWKGYMSDEGFLYVNSERQVGIAMGSLCVIEGALYLLDTVLAC
IHYSKGDTDYTQ*

BS09074.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
Ssk-PA 162 CG6981-PA 1..162 1..162 857 100 Plus
Ssk-PB 162 CG6981-PB 1..162 1..162 857 100 Plus