Clone Sequence Records
BS09078.3prime Sequence
997 bp (854 high quality bases) assembled on 2006-01-24
> BS09078.3prime
ATGGTCTAGAAAGCTTCTAATCCTGCTTCTTTTGTGCAGCTGTCTTTTTG
ATCGCTGGCGCAGCCTGGGGACCTTCGATGGCTCCATTGGCTGTCTTGCC
CTCCAGCTTCTGGGCGGCATGCTGCTGCTCCATCTCCCCGGAGAAGCCGA
ACTCATTCACGCGCTTCAAATCGACGCGATACTGCCAGCGCTGGTAGAGG
AACACAAAGAAGATGATGTCGTCGCGGAAGCAACCCAACCGGTACATTGT
GGGCATTTTGATCACAAACGCAAAGATGTCATCGATAAAGGTGTTGAGGA
ACTTGTAGGTCATCATGCGCCACGGCATGTGGGCCACCGACTTTAGCTTG
TAGTTGATGAATAGCTGCGGCGTCATCAGGATGAAGCCAAAGGTCAGCAG
ATAGCCGTACAGCATGTTGAGCACAAATGAGTACCAGCCCTTGTGCTCGT
TGTAGATCAACGAGTAGACAAAGTAGGCCACCAGGAGCGGGAAGCATGCC
CAGCCCAGGTACTTGAAGGCCAGTTTGTCATAGTCTTTGGTCGAGCTCTC
CGAATAGGAGCCCTTGTCCTGGAAACTGATTCTCGGCAGCACTCCCAGAA
TCTTTTGATCGTGATCGTAGTTGATATCCACGACCTTGTGAATCTTCCAC
ACCTCGATTCCCAGTCCCACGAAACAGGAGATGCGAATCATGAAGTTGGT
CTCGTTGTCCAGCACGTACAGCAGGATGATTAGTGACTGGAAGACACCGA
AGAACACCGATCGTACAGACAGTCCTTCGAGCGACTTGCGATTGTTCCAG
AACTGAATGTCGTTCTTGAAGGCCAGCAGTTCGAACACCGAATGCAGTAT
GGAAACGGCCACTGTGATGCCCAGCAGGTAGATATTGGTGTCCAGCAGAG
TCTCCTTCAGCGAGTCCTGATCCTCGTCACTCTCCTCCGGCTGGCTGGCG
GGCATCAGCTCACCGAGCATATTGCCAGCCCACTTGTTCCTCATCTG
BS09078.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:19:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3702-PA | 1926 | CG3702-RA | 946..1926 | 997..17 | 4855 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:46:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3702-RB | 2252 | CG3702-RB | 1038..2021 | 997..14 | 4890 | 99.8 | Minus |
| CG3702-RA | 2369 | CG3702-RA | 1155..2138 | 997..14 | 4890 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:46:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4224881..4225864 | 14..997 | 4890 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:46:44 has no hits.
BS09078.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:58:35 Download gff for
BS09078.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3702-PA | 946..1926 | 17..997 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:04:41 Download gff for
BS09078.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3702-PA | 946..1926 | 17..997 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:29:49 Download gff for
BS09078.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3702-RA | 1155..2138 | 14..997 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:32:59 Download gff for
BS09078.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3702-RA | 1155..2138 | 14..997 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:32:59 Download gff for
BS09078.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4224881..4225864 | 14..997 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:29:49 Download gff for
BS09078.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4224881..4225864 | 14..997 | 99 | | Plus |
BS09078.5prime Sequence
869 bp (856 high quality bases) assembled on 2006-01-24
> BS09078.5prime
GAAGTTATCAGTCGACATGTCGAAAGCAGGCGAAGATCAGCCCGCAGCAG
AGGGTGCGGTGATTGCGGGCAATGGTAACGCTGAGCTGGCCCAAAATGAA
GGCCAGAATGAGCAACAACAACCCCCGCCGAATCAGCCCACCCGCATGGA
GTCCTTCTTTGCGATGACCAAGTCCCTCATCCTGCGTGCCCTGATCATCT
ACTTTGTGAGCTCCTTTTTCCGACGACCTGCGCCCGATGCCGCCAGTCAA
GGCAAAAGTGTCGCTAATGCGGGTCCCAAGATCACGGCCTGGAATTACTT
CGAGAACGGCACGGACTTTGACCTGCACGTGTGGTTGTCGGAGAATCCCG
ATGTGGTTAACTTCCAGCAAAAGGCGAATCTCCTCTGGCTACAGAAGGAC
CTCACCTATGGCGATTGGACGTCGGGCGTCAACGGAGATGGCATTTACAC
GCACAGTTTGAAGCTTAAGACCAGCCAGCATCTGATGAACAATGGCAGTG
TGTACCTACATGCCTTTGTCACGCGTACCGGCATGAGTCCCGATCCCAAA
GCCCCGAATTACGCCACCAAAATGGGCCACCAGCAACATCAGCTGAACAA
GTTCAAGAAGTTGCGTGTGAACCGCAACTACAACTTGCTGGCCAGCGAGA
AGGAGAAGTTGGAGCACGAGCTCAAGCATGCGAATCTCAAGGATACCATC
GTGTCTCACTGGCATCCTAATCTCACGGTCAATCTCGTAGTGGACCAAAC
TAACTGGGCCGAGGGATCTGTGCCGCCGCCACTGGATGACTACGTAAAGT
TCGTAGACGGCGGTAAGACCTATCTGCCCATCCTGTTCGTCAACGACTAC
TGGAATCTTTCAGCGGAGT
BS09078.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:19:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3702-PA | 1926 | CG3702-RA | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:39:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3702-RB | 2252 | CG3702-RB | 92..941 | 16..866 | 4230 | 99.9 | Plus |
| CG3702-RA | 2369 | CG3702-RA | 209..1058 | 16..866 | 4230 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:39:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4225967..4226768 | 859..58 | 4010 | 100 | Minus |
| 2L | 23513712 | 2L | 4226845..4226889 | 60..16 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:39:34 has no hits.
BS09078.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:58:36 Download gff for
BS09078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3702-PA | 1..853 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:04:43 Download gff for
BS09078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3702-PA | 1..853 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:07:32 Download gff for
BS09078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3702-RA | 204..1062 | 9..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:02:28 Download gff for
BS09078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3702-RA | 204..1062 | 9..869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:02:28 Download gff for
BS09078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4225957..4226767 | 59..869 | 99 | <- | Minus |
| 2L | 4226847..4226894 | 9..58 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:07:32 Download gff for
BS09078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4225957..4226767 | 59..869 | 99 | <- | Minus |
| arm_2L | 4226847..4226894 | 9..58 | 94 | | Minus |
BS09078.complete Sequence
1958 bp assembled on 2008-01-16
GenBank Submission: FJ636347
> BS09078.complete
GAAGTTATCAGTCGACATGTCGAAAGCAGGCGAAGATCAGCCCGCAGCAG
AGGGTGCGGTGATTGCGGGCAATGGTAACGCTGAGCTGGCCCAAAATGAA
GGCCAGAATGAGCAACAACAACCCCCGCCGAATCAGCCCACCCGCATGGA
GTCCTTCTTTGCGATGACCAAGTCCCTCATCCTGCGTGCCCTGATCATCT
ACTTTGTGAGCTCCTTTTTCCGACGACCTGCGCCCGATGCCGCCAGTCAA
GGCAAAAGTGTCGCTAATGCGGGTCCCAAGATCACGGCCTGGAATTACTT
CGAGAACGGCACGGACTTTGACCTGCACGTGTGGTTGTCGGAGAATCCCG
ATGTGGTTAACTTCCAGCAAAAGGCGAATCTCCTCTGGCTACAGAAGGAC
CTCACCTATGGCGATTGGACGTCGGGCGTCAACGGAGATGGCATTTACAC
GCACAGTTTGAAGCTTAAGACCAGCCAGCATCTGATGAACAATGGCAGTG
TGTACCTACATGCCTTTGTCACGCGTACCGGCATGAGTCCCGATCCCAAA
GCCCCGAATTACGCCACCAAAATGGGCCACCAGCAACATCAGCTGAACAA
GTTCAAGAAGTTGCGTGTGAACCGCAACTACAACTTGCTGGCCAGCGAGA
AGGAGAAGTTGGAGCACGAGCTCAAGCATGCGAATCTCAAGGATACCATC
GTGTCTCACTGGCATCCTAATCTCACGGTCAATCTCGTAGTGGACCAAAC
TAACTGGGCCGAGGGATCTGTGCCGCCGCCACTGGATGACTACGTAAAGT
TCGTAGACGGCGGTAAGACCTATCTGCCCATCCTGTTCGTCAACGACTAC
TGGAATCTTCAGCGGGAGTATCAACCCATTAATGAGACCACTCCCGAACT
GGAGCTGCACCTCACTTTCCAGCCGCTGGGCATGTTCAAGTGGCAGCTGT
ATGCCGCCAAACAGATGAAGAACAAGTGGGCTGGCAATATGCTCGGTGAG
CTGATGGCCGCCAGCCAGCCGGAGGAGAGTGACGAGGATCAGGACTCGCT
GAAGGAGACTCTGCTGGACACCAATATCTACCTGCTGGGCATCACAGTGG
CCGTTTCCATACTGCATTCGGTGTTCGAACTGCTGGCCTTCAAGAACGAC
ATTCAGTTCTGGAACAATCGCAAGTCGCTCGAAGGACTGTCTGTACGATC
GGTGTTCTTCGGTGTCTTCCAGTCACTAATCATCCTGCTGTACGTGCTGG
ACAACGAGACCAACTTCATGATTCGCATCTCCTGTTTCGTGGGACTGGGA
ATCGAGGTGTGGAAGATTCACAAGGTCGTGGATATCAACTACGATCACGA
TCAAAAGATTCTGGGAGTGCTGCCGAGAATCAGTTTCCAGGACAAGGGCT
CCTATTCGGAGAGCTCGACCAAAGACTATGACAAACTGGCCTTCAAGTAC
CTGGGCTGGGCATGCTTCCCGCTCCTGGTGGCCTACTTTGTCTACTCGTT
GATCTACAACGAGCACAAGGGCTGGTACTCATTTGTGCTCAACATGCTGT
ACGGCTATCTGCTGACCTTTGGCTTCATCCTGATGACGCCGCAGCTATTC
ATCAACTACAAGCTAAAGTCGGTGGCCCACATGCCGTGGCGCATGATGAC
CTACAAGTTCCTCAACACCTTTATCGATGACATCTTTGCGTTTGTGATCA
AAATGCCCACAATGTACCGGTTGGGTTGCTTCCGCGACGACATCATCTTC
TTTGTGTTCCTCTACCAGCGCTGGCAGTATCGCGTCGATTTGAAGCGCGT
GAATGAGTTCGGCTTCTCCGGGGAGATGGAGCAGCAGCATGCCGCCCAGA
AGCTGGAGGGCAAGACAGCCAATGGAGCCATCGAAGGTCCCCAGGCTGCG
CCAGCGATCAAAAAGACAGCTGCACAAAAGAAGCAGGATTAGAAGCTTTC
TAGACCAT
BS09078.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:18:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3702-RB | 1926 | CG3702-PB | 1..1926 | 17..1942 | 9630 | 100 | Plus |
| CG3702-RA | 1926 | CG3702-PA | 1..1926 | 17..1942 | 9630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:18:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3702-RB | 2252 | CG3702-RB | 92..2021 | 16..1945 | 9650 | 100 | Plus |
| CG3702-RA | 2369 | CG3702-RA | 209..2138 | 16..1945 | 9650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:18:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4224881..4226768 | 1945..58 | 9440 | 100 | Minus |
| 2L | 23513712 | 2L | 4226845..4226889 | 60..16 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:18:02 has no hits.
BS09078.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:58 Download gff for
BS09078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3702-RA | 1..1926 | 17..1942 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:48 Download gff for
BS09078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3702-RA | 210..2135 | 17..1942 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:21:56 Download gff for
BS09078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3702-RA | 210..2135 | 17..1942 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:09:59 Download gff for
BS09078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3702-RA | 204..2138 | 9..1945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:30 Download gff for
BS09078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3702-RA | 210..2135 | 17..1942 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:30 Download gff for
BS09078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4224884..4226767 | 59..1942 | 100 | <- | Minus |
| 2L | 4226847..4226888 | 17..58 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:21:56 Download gff for
BS09078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4224884..4226767 | 59..1942 | 100 | <- | Minus |
| arm_2L | 4226847..4226888 | 17..58 | 100 | | Minus |
BS09078.pep Sequence
Translation from 16 to 1941
> BS09078.pep
MSKAGEDQPAAEGAVIAGNGNAELAQNEGQNEQQQPPPNQPTRMESFFAM
TKSLILRALIIYFVSSFFRRPAPDAASQGKSVANAGPKITAWNYFENGTD
FDLHVWLSENPDVVNFQQKANLLWLQKDLTYGDWTSGVNGDGIYTHSLKL
KTSQHLMNNGSVYLHAFVTRTGMSPDPKAPNYATKMGHQQHQLNKFKKLR
VNRNYNLLASEKEKLEHELKHANLKDTIVSHWHPNLTVNLVVDQTNWAEG
SVPPPLDDYVKFVDGGKTYLPILFVNDYWNLQREYQPINETTPELELHLT
FQPLGMFKWQLYAAKQMKNKWAGNMLGELMAASQPEESDEDQDSLKETLL
DTNIYLLGITVAVSILHSVFELLAFKNDIQFWNNRKSLEGLSVRSVFFGV
FQSLIILLYVLDNETNFMIRISCFVGLGIEVWKIHKVVDINYDHDQKILG
VLPRISFQDKGSYSESSTKDYDKLAFKYLGWACFPLLVAYFVYSLIYNEH
KGWYSFVLNMLYGYLLTFGFILMTPQLFINYKLKSVAHMPWRMMTYKFLN
TFIDDIFAFVIKMPTMYRLGCFRDDIIFFVFLYQRWQYRVDLKRVNEFGF
SGEMEQQHAAQKLEGKTANGAIEGPQAAPAIKKTAAQKKQD*
BS09078.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3702-PB | 641 | CG3702-PB | 1..641 | 1..641 | 3408 | 100 | Plus |
| CG3702-PA | 641 | CG3702-PA | 1..641 | 1..641 | 3408 | 100 | Plus |
| CG4332-PA | 562 | CG4332-PA | 79..535 | 141..596 | 662 | 31.6 | Plus |
