Clone BS09080 Report

Search the DGRC for BS09080

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:90
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG7387-RA
Protein status:BS09080.pep: full length peptide match
Sequenced Size:1382

Clone Sequence Records

BS09080.5prime Sequence

774 bp (599 high quality bases) assembled on 2006-01-24

> BS09080.5prime
GAAGTTATCAGTCGACGTGTTTCGTTTAAAATTATTTCGCAGTCCTGGAG
ACGTATTAAGCACTTTAATTAGCGGAGCTGCAACGGATTGCTGCAGGAAG
ACGTCACATTGTTTGGAGTTGGATCGCGCTCCCGCTGTCGCTGCCTGCTG
GATCTGTATGCGGATGATCAGTCAATATCAGTTCAGGACCACGAAACCAG
CCTACTATCCAGATCGCCAGCGGGAGGCGAAGCGAACGTCAGCGGGAGCC
ACGCCTCAACAGGTGTCATCTCCGGCTGTTAAGTACCCGCAAAGCCGAGG
CATGCCCAAGGACTACTACTACAAAGTGTTAGGCGTCAACAGGCACGCCA
CCATCCAGCAAATCAGATCGGCTTTCTATGCGCTGGCCAAGCGCTATCAT
CCCGACTCGACGCACTCGGAACAAAAGCTGAAGCACTTCCAGGAGCTGTC
CAACGCCTACAACATCCTAACCGACGAGACGAAGCGCTTGGAGTACGATC
AGCTGGGCGGGATTAAGGATGAGCGCGCTTTTCTTGAACAGGCGGGCAAT
CCCCTAAATGTGGGCCTCGAGGAGGCCAAGAAGTTCGATTTCGGATAAGA
CGACAAATGATGAGATCAACAAACTGAAGAGCAACGAGTTCGATCTGCCA
CTTGACTTCCTTGAGGCGACAGTGGGATGCAAGAAGCGGATAGAGCTGCG
CTACTTGCGGAAATGGGAGACCTTGCAAGGTCAAGTCACAATTGATGGCG
CATCGGGATGTGAGCAAGGAACCC

BS09080.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:19:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7387-PA 1350 CG7387-RA 2..574 18..590 2865 100 Plus
CG7387-PA 1350 CG7387-RA 573..706 590..723 645 99.2 Plus
CG7387-PA 1350 CG7387-RA 706..756 724..774 205 96 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7387-RA 1508 CG7387-RA 110..864 18..774 3690 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8192414..8193007 612..18 2925 99.8 Minus
3L 28110227 3L 8192166..8192327 774..612 720 97.5 Minus
Blast to na_te.dros performed on 2015-02-13 08:59:42 has no hits.

BS09080.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:58:39 Download gff for BS09080.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7387-PA 2..756 18..774 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:04:46 Download gff for BS09080.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7387-PA 2..756 18..774 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:44:08 Download gff for BS09080.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7387-RA 110..864 18..774 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:35:02 Download gff for BS09080.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7387-RA 110..864 18..774 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:35:02 Download gff for BS09080.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8192166..8192326 613..774 97 <- Minus
3L 8192414..8193007 18..612 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:44:08 Download gff for BS09080.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8185266..8185426 613..774 97 <- Minus
arm_3L 8185514..8186107 18..612 99   Minus

BS09080.complete Sequence

1382 bp assembled on 2009-08-24

GenBank Submission: KX805495

> BS09080.complete
GAAGTTATCAGTCGACATGTTTCGTTTAAAATTATTTCGCAGTCCTGGAG
ACGTATTAAGCACTTTAATTAGCGGAGCTGCAACGGATTGCTGCAGGAAG
ACGTCACATTGTTTGGAGTTGGATCGCGCTCCCGCTGTCGCTGCCTGCTG
GATCTGTATGCGGATGATCAGTCAATATCAGTTCAGGACCACGAAACCAG
CCTACTATCCAGATCGCCAGCGGGAGGCGAAGCGAACGTCAGCGGGAGCC
ACGCCTCAACAGGTGTCATCTCCGGCTGTTAAGTACCCGCAAAGCCGAGG
CATGCCCAAGGACTACTACTACAAAGTGTTAGGCGTCAACAGGCACGCCA
CCATCCAGCAAATCAGATCGGCTTTCTATGCGCTGGCCAAGCGCTATCAT
CCCGACTCGACGCACTCGGAACAAAAGCTGAAGCACTTCCAGGAGCTGTC
CAACGCCTACAACATCCTAACCGACGAGACGAAGCGCTTGGAGTACGATC
AGCTGGGCGGGATTAAGGATGAGCGCGCTTTTCTTGAACAGGCGGGCAAT
CCCCTAAATGTGGGCCTCGAGGAGGCCAAGAAGTTCGATTCGGATAAGAC
GACAAATGATGAGATCAACAAACTGAAGAGCAACGAGTTCGATCTGCCAC
TTGACTTCCTTGAGGCGACAGTGGGATGCAAGAAGCGGATAGAGCTGCGC
TACTTGCGGAAATGCGAGACCTGCAAGGGCAAGTCACAATTGATGGCGCA
TCGGGATGTGGGCAAGGAACCCTGTCGGCGATGCAATGGAACTGGAAAGG
TCATGACCAAAACGCCAACCTTCTCATCGGTGAACACATGCACGCAGTGC
AAGGGCAAGCGATTCACAAATCGCAACGACTGCGAAACATGTTCGAATCG
CGGCTTCGTGGTGTCCAATGTGGATGTGATGGTATCGGTGCCTTCCGGAT
CCCGGGACGGTGATGTGGTGAACATTATAAATCCGGAAACGAAGCAGCAG
GTCACCTACCGCTTGTCGGTGCCGTCTAGCGACTATTTCCGACGCGTTGG
CAATGACATTCTAACCGACAAGCACCTAAACATCTCGGAGGCCATTCTGG
GCGGATCCTTTCAGATACGGGGTCTGTACGAAAGCGTGGAGCTGCGTGTG
GAGCCGGGCACCCAATCCCACACCCAGGTGGTGCTCAATGGCAAGGGGGT
GCGCTCCAGGGAGGGCGTGGGCAACCACATCGTCACGCTGAAGGTGCGTA
TACCCCGGAATCTCTCCGTAAAGCAACGCCAACTGGTTTTGGCACTGTCC
CAGGCAGAGGATCCGGTTTTCGAGCCCAAGACTAAGAGCACGGAGGCGGG
CAATTTGAGTCACTAAAAGCTTTCTAGACCAT

BS09080.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7387-RA 1350 CG7387-PA 1..1350 17..1366 6750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG7387-RA 1508 CG7387-RA 109..1460 17..1368 6760 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8191570..8192327 1368..611 3790 100 Minus
3L 28110227 3L 8192414..8193008 611..17 2975 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:30:12 has no hits.

BS09080.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:13 Download gff for BS09080.complete
Subject Subject Range Query Range Percent Splice Strand
CG7387-RA 115..1456 23..1364 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:49:30 Download gff for BS09080.complete
Subject Subject Range Query Range Percent Splice Strand
CG7387-RA 115..1456 23..1364 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:07 Download gff for BS09080.complete
Subject Subject Range Query Range Percent Splice Strand
CG7387-RA 115..1456 23..1364 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:07 Download gff for BS09080.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8191574..8192326 612..1364 100 <- Minus
3L 8192414..8193002 23..611 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:49:30 Download gff for BS09080.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8184674..8185426 612..1364 100 <- Minus
arm_3L 8185514..8186102 23..611 100   Minus

BS09080.pep Sequence

Translation from 16 to 1365

> BS09080.pep
MFRLKLFRSPGDVLSTLISGAATDCCRKTSHCLELDRAPAVAACWICMRM
ISQYQFRTTKPAYYPDRQREAKRTSAGATPQQVSSPAVKYPQSRGMPKDY
YYKVLGVNRHATIQQIRSAFYALAKRYHPDSTHSEQKLKHFQELSNAYNI
LTDETKRLEYDQLGGIKDERAFLEQAGNPLNVGLEEAKKFDSDKTTNDEI
NKLKSNEFDLPLDFLEATVGCKKRIELRYLRKCETCKGKSQLMAHRDVGK
EPCRRCNGTGKVMTKTPTFSSVNTCTQCKGKRFTNRNDCETCSNRGFVVS
NVDVMVSVPSGSRDGDVVNIINPETKQQVTYRLSVPSSDYFRRVGNDILT
DKHLNISEAILGGSFQIRGLYESVELRVEPGTQSHTQVVLNGKGVRSREG
VGNHIVTLKVRIPRNLSVKQRQLVLALSQAEDPVFEPKTKSTEAGNLSH*

BS09080.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7387-PA 449 CG7387-PA 1..449 1..449 2349 100 Plus
l(2)tid-PE 445 CG5504-PE 38..422 74..431 466 31.3 Plus
l(2)tid-PA 447 CG5504-PA 38..422 74..431 466 31.3 Plus
l(2)tid-PC 507 CG5504-PC 38..422 74..431 466 31.3 Plus
l(2)tid-PD 514 CG5504-PD 38..422 74..431 466 31.3 Plus