Clone Sequence Records
BS09080.5prime Sequence
774 bp (599 high quality bases) assembled on 2006-01-24
> BS09080.5prime
GAAGTTATCAGTCGACGTGTTTCGTTTAAAATTATTTCGCAGTCCTGGAG
ACGTATTAAGCACTTTAATTAGCGGAGCTGCAACGGATTGCTGCAGGAAG
ACGTCACATTGTTTGGAGTTGGATCGCGCTCCCGCTGTCGCTGCCTGCTG
GATCTGTATGCGGATGATCAGTCAATATCAGTTCAGGACCACGAAACCAG
CCTACTATCCAGATCGCCAGCGGGAGGCGAAGCGAACGTCAGCGGGAGCC
ACGCCTCAACAGGTGTCATCTCCGGCTGTTAAGTACCCGCAAAGCCGAGG
CATGCCCAAGGACTACTACTACAAAGTGTTAGGCGTCAACAGGCACGCCA
CCATCCAGCAAATCAGATCGGCTTTCTATGCGCTGGCCAAGCGCTATCAT
CCCGACTCGACGCACTCGGAACAAAAGCTGAAGCACTTCCAGGAGCTGTC
CAACGCCTACAACATCCTAACCGACGAGACGAAGCGCTTGGAGTACGATC
AGCTGGGCGGGATTAAGGATGAGCGCGCTTTTCTTGAACAGGCGGGCAAT
CCCCTAAATGTGGGCCTCGAGGAGGCCAAGAAGTTCGATTTCGGATAAGA
CGACAAATGATGAGATCAACAAACTGAAGAGCAACGAGTTCGATCTGCCA
CTTGACTTCCTTGAGGCGACAGTGGGATGCAAGAAGCGGATAGAGCTGCG
CTACTTGCGGAAATGGGAGACCTTGCAAGGTCAAGTCACAATTGATGGCG
CATCGGGATGTGAGCAAGGAACCC
BS09080.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:19:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7387-PA | 1350 | CG7387-RA | 2..574 | 18..590 | 2865 | 100 | Plus |
CG7387-PA | 1350 | CG7387-RA | 573..706 | 590..723 | 645 | 99.2 | Plus |
CG7387-PA | 1350 | CG7387-RA | 706..756 | 724..774 | 205 | 96 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:59:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7387-RA | 1508 | CG7387-RA | 110..864 | 18..774 | 3690 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:59:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8192414..8193007 | 612..18 | 2925 | 99.8 | Minus |
3L | 28110227 | 3L | 8192166..8192327 | 774..612 | 720 | 97.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:59:42 has no hits.
BS09080.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:58:39 Download gff for
BS09080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7387-PA | 2..756 | 18..774 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:04:46 Download gff for
BS09080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7387-PA | 2..756 | 18..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:44:08 Download gff for
BS09080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7387-RA | 110..864 | 18..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:35:02 Download gff for
BS09080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7387-RA | 110..864 | 18..774 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:35:02 Download gff for
BS09080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8192166..8192326 | 613..774 | 97 | <- | Minus |
3L | 8192414..8193007 | 18..612 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:44:08 Download gff for
BS09080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8185266..8185426 | 613..774 | 97 | <- | Minus |
arm_3L | 8185514..8186107 | 18..612 | 99 | | Minus |
BS09080.complete Sequence
1382 bp assembled on 2009-08-24
GenBank Submission: KX805495
> BS09080.complete
GAAGTTATCAGTCGACATGTTTCGTTTAAAATTATTTCGCAGTCCTGGAG
ACGTATTAAGCACTTTAATTAGCGGAGCTGCAACGGATTGCTGCAGGAAG
ACGTCACATTGTTTGGAGTTGGATCGCGCTCCCGCTGTCGCTGCCTGCTG
GATCTGTATGCGGATGATCAGTCAATATCAGTTCAGGACCACGAAACCAG
CCTACTATCCAGATCGCCAGCGGGAGGCGAAGCGAACGTCAGCGGGAGCC
ACGCCTCAACAGGTGTCATCTCCGGCTGTTAAGTACCCGCAAAGCCGAGG
CATGCCCAAGGACTACTACTACAAAGTGTTAGGCGTCAACAGGCACGCCA
CCATCCAGCAAATCAGATCGGCTTTCTATGCGCTGGCCAAGCGCTATCAT
CCCGACTCGACGCACTCGGAACAAAAGCTGAAGCACTTCCAGGAGCTGTC
CAACGCCTACAACATCCTAACCGACGAGACGAAGCGCTTGGAGTACGATC
AGCTGGGCGGGATTAAGGATGAGCGCGCTTTTCTTGAACAGGCGGGCAAT
CCCCTAAATGTGGGCCTCGAGGAGGCCAAGAAGTTCGATTCGGATAAGAC
GACAAATGATGAGATCAACAAACTGAAGAGCAACGAGTTCGATCTGCCAC
TTGACTTCCTTGAGGCGACAGTGGGATGCAAGAAGCGGATAGAGCTGCGC
TACTTGCGGAAATGCGAGACCTGCAAGGGCAAGTCACAATTGATGGCGCA
TCGGGATGTGGGCAAGGAACCCTGTCGGCGATGCAATGGAACTGGAAAGG
TCATGACCAAAACGCCAACCTTCTCATCGGTGAACACATGCACGCAGTGC
AAGGGCAAGCGATTCACAAATCGCAACGACTGCGAAACATGTTCGAATCG
CGGCTTCGTGGTGTCCAATGTGGATGTGATGGTATCGGTGCCTTCCGGAT
CCCGGGACGGTGATGTGGTGAACATTATAAATCCGGAAACGAAGCAGCAG
GTCACCTACCGCTTGTCGGTGCCGTCTAGCGACTATTTCCGACGCGTTGG
CAATGACATTCTAACCGACAAGCACCTAAACATCTCGGAGGCCATTCTGG
GCGGATCCTTTCAGATACGGGGTCTGTACGAAAGCGTGGAGCTGCGTGTG
GAGCCGGGCACCCAATCCCACACCCAGGTGGTGCTCAATGGCAAGGGGGT
GCGCTCCAGGGAGGGCGTGGGCAACCACATCGTCACGCTGAAGGTGCGTA
TACCCCGGAATCTCTCCGTAAAGCAACGCCAACTGGTTTTGGCACTGTCC
CAGGCAGAGGATCCGGTTTTCGAGCCCAAGACTAAGAGCACGGAGGCGGG
CAATTTGAGTCACTAAAAGCTTTCTAGACCAT
BS09080.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:30:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7387-RA | 1350 | CG7387-PA | 1..1350 | 17..1366 | 6750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7387-RA | 1508 | CG7387-RA | 109..1460 | 17..1368 | 6760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8191570..8192327 | 1368..611 | 3790 | 100 | Minus |
3L | 28110227 | 3L | 8192414..8193008 | 611..17 | 2975 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:30:12 has no hits.
BS09080.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:13 Download gff for
BS09080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7387-RA | 115..1456 | 23..1364 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:49:30 Download gff for
BS09080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7387-RA | 115..1456 | 23..1364 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:07 Download gff for
BS09080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7387-RA | 115..1456 | 23..1364 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:07 Download gff for
BS09080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8191574..8192326 | 612..1364 | 100 | <- | Minus |
3L | 8192414..8193002 | 23..611 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:49:30 Download gff for
BS09080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8184674..8185426 | 612..1364 | 100 | <- | Minus |
arm_3L | 8185514..8186102 | 23..611 | 100 | | Minus |
BS09080.pep Sequence
Translation from 16 to 1365
> BS09080.pep
MFRLKLFRSPGDVLSTLISGAATDCCRKTSHCLELDRAPAVAACWICMRM
ISQYQFRTTKPAYYPDRQREAKRTSAGATPQQVSSPAVKYPQSRGMPKDY
YYKVLGVNRHATIQQIRSAFYALAKRYHPDSTHSEQKLKHFQELSNAYNI
LTDETKRLEYDQLGGIKDERAFLEQAGNPLNVGLEEAKKFDSDKTTNDEI
NKLKSNEFDLPLDFLEATVGCKKRIELRYLRKCETCKGKSQLMAHRDVGK
EPCRRCNGTGKVMTKTPTFSSVNTCTQCKGKRFTNRNDCETCSNRGFVVS
NVDVMVSVPSGSRDGDVVNIINPETKQQVTYRLSVPSSDYFRRVGNDILT
DKHLNISEAILGGSFQIRGLYESVELRVEPGTQSHTQVVLNGKGVRSREG
VGNHIVTLKVRIPRNLSVKQRQLVLALSQAEDPVFEPKTKSTEAGNLSH*
BS09080.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:41:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7387-PA | 449 | CG7387-PA | 1..449 | 1..449 | 2349 | 100 | Plus |
l(2)tid-PE | 445 | CG5504-PE | 38..422 | 74..431 | 466 | 31.3 | Plus |
l(2)tid-PA | 447 | CG5504-PA | 38..422 | 74..431 | 466 | 31.3 | Plus |
l(2)tid-PC | 507 | CG5504-PC | 38..422 | 74..431 | 466 | 31.3 | Plus |
l(2)tid-PD | 514 | CG5504-PD | 38..422 | 74..431 | 466 | 31.3 | Plus |