Clone Sequence Records
BS09081.3prime Sequence
891 bp (772 high quality bases) assembled on 2006-01-24
> BS09081.3prime
ATGGTCTAGAAAGCTTTTAAGATGACGTATTTAACGAATATAGCAAGGAA
AGAATCCAATCCGTGTGCCTCATAACATTCGTAAAAACGAGTATGTTTTT
CGATGAAAAACTGAAAATGCCCACCAAAATGTAGCGTATCTGGCCATTGG
CATTCATCCCTCCAACCACTATGTAGCTACGTTTCTGGCGGGGATTACTT
GTGTCGGATGGATCTACCATGCACACTTGATTTTCGTTGATTTGAAATCC
GAGATGTTTCGCGCATTGGCTCCCTTCCATTAGCCTGACGTCGAATTGTT
CAGCTAAATCTGTATCAATTATTTTCAATTCTCGAGCCTTTTCGGCGTTT
TGCTGGTATATTTGCGTTGTCAAAATGCAGATGGGTTTCATTGCTGTGCT
GCTTATTGATCGAACAAGTTTGAGTACTGCTATGTCATTTCGGTAATCAT
TCGTAGTAAAATTTGGGTGCTTTGAAACCGATTCAATTTGGTTGATTGCG
CTTATTCCTTCGAGCACTACGAACACGTATAAATAGGCGGCAACTGTGGG
CAGGTCTGTGGCAGCAGCGATGATCAATTGATCTGTTATTAATACGCCAA
CGGCATAAGAACCAGGCCAATAAATTCTTAGCTGCGCGATCGGTGCCGCG
ATATCCTGACTGCAGCTATTGTACAACATCGAAGGAAGTGGTGGTGAAGC
CGCAGGAGTCCAGTGCCGATTAGCGTCAGGAGCAATGGGATTGCCCATGG
CAATGTCTCCCCCGGACACGCCGATTGGTAGGTAGTCATTTCTAGCTATT
GTCGATGAGATCCAATCCACATAGCTGGTCACGTCGGTATAGACTCCTAC
TCCACGGCATTCTGGATCCCCAAAGCTTACGATTCCTAACT
BS09081.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:19:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10764-PA | 1572 | CG10764-RA | 698..1572 | 891..17 | 4375 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:33:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10764-RA | 1700 | CG10764-RA | 721..1597 | 891..15 | 4385 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:33:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17455244..17455626 | 397..15 | 1915 | 100 | Minus |
2R | 25286936 | 2R | 17454521..17454832 | 891..580 | 1560 | 100 | Minus |
2R | 25286936 | 2R | 17455053..17455189 | 530..394 | 685 | 100 | Minus |
2R | 25286936 | 2R | 17454909..17454957 | 579..531 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 14:33:38 has no hits.
BS09081.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:58:40 Download gff for
BS09081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10764-PA | 698..1572 | 17..891 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:04:48 Download gff for
BS09081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10764-PA | 698..1572 | 17..891 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:07:30 Download gff for
BS09081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10764-RA | 721..1602 | 10..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:30:11 Download gff for
BS09081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10764-RA | 721..1602 | 10..891 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:30:11 Download gff for
BS09081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17454521..17454832 | 580..891 | 100 | -> | Minus |
2R | 17454909..17454957 | 531..579 | 100 | -> | Minus |
2R | 17455053..17455189 | 394..530 | 100 | -> | Minus |
2R | 17455248..17455631 | 10..393 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:07:30 Download gff for
BS09081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13342026..13342337 | 580..891 | 100 | -> | Minus |
arm_2R | 13342414..13342462 | 531..579 | 100 | -> | Minus |
arm_2R | 13342558..13342694 | 394..530 | 100 | -> | Minus |
arm_2R | 13342753..13343136 | 10..393 | 99 | | Minus |
BS09081.5prime Sequence
904 bp (754 high quality bases) assembled on 2006-01-24
> BS09081.5prime
GAAGTTATCAGTCGACATGCGGTCGTTGGTCTCGGTTGCTTTGTTATCTT
TGTTAACTTTGTGTGTTACAGAAAATGAACACTTTAAGTTTTTAGAGACT
CCTTGTGGGATATCAACCCGTCCCAAAATTAGCGGTGGTGACGATGCAGC
CGAGCCAAATTCTATATGGATGGCAGCGATATTCAATTCATCCGATTTTC
AATGCGGTGGCACAATTATACATATGCGTTTTGTGTTAAGTGCTGCTCAT
TGCTTGGTAAGAGGATATGATCTATACGTGAGGTTGGGGGCACGCAACAT
AAATGAGCCCGCTGCTGTCCACACAGTCATTAATGTCTTTGTGCACCATG
ACTTCATTGCATCGGAATACCGAAATGATATAGGACTGCTTCAACTGTCG
GAGAGTATCGTCTACACAGTTCGAGTTCAACCAATTTGCATCTTTTTGGA
TCCGGCTCTCAAAGGGAGTGTTGAAAAATTGAAAACGTTCAGAGCCCTTG
GCTGGGGAAATAGGAACGGAAAATTGAGCATAATGTTGCAAACCATCTAT
CTTCTACACTTGAAAAGAAATGAGTGCAAACGCAAATTGAACTTTAATCT
CAATTCAAGACAGATTTGCGCTGGAACCAAAAATGGAGACACCTGTAGAG
GCGATTCTGGGGGTCCCTTGTCCACGAATATATTGTTTCCTTCCAATAAA
AGTTATGAGGTGCAGTTAGGAATCGTAAGCTTTGGGGATCCAGAATGCCG
TGGAGTAGGAGTCTATACCGACGTGACCAGCTATGTGGATTGGATCTCAT
CGACNATAGCTAGAAATGACTACCTACCAATCGGCGTGTCCGGGGGAGAC
ATTGCATGGGCAATCCATTGCTTCTGACGCTATCGGCACTGGACTCCTGC
GGCT
BS09081.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:19:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10764-PA | 1572 | CG10764-RA | 1..839 | 17..855 | 4176 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:03:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10764-RA | 1700 | CG10764-RA | 24..914 | 17..904 | 4354 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:03:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17454224..17454714 | 417..904 | 2279 | 99 | Plus |
2R | 25286936 | 2R | 17453422..17453635 | 17..230 | 1070 | 100 | Plus |
2R | 25286936 | 2R | 17454029..17454174 | 274..419 | 730 | 100 | Plus |
2R | 25286936 | 2R | 17453896..17453953 | 228..285 | 245 | 94.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 02:03:13 has no hits.
BS09081.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:58:41 Download gff for
BS09081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10764-PA | 1..891 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:04:49 Download gff for
BS09081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10764-PA | 1..891 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:36:42 Download gff for
BS09081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10764-RA | 21..914 | 14..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:05:23 Download gff for
BS09081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10764-RA | 21..914 | 14..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:05:23 Download gff for
BS09081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17453419..17453632 | 14..227 | 99 | -> | Plus |
2R | 17453896..17453941 | 228..273 | 100 | -> | Plus |
2R | 17454029..17454174 | 274..419 | 100 | -> | Plus |
2R | 17454227..17454714 | 420..904 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:36:42 Download gff for
BS09081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13340924..13341137 | 14..227 | 99 | -> | Plus |
arm_2R | 13341401..13341446 | 228..273 | 100 | -> | Plus |
arm_2R | 13341534..13341679 | 274..419 | 100 | -> | Plus |
arm_2R | 13341732..13342219 | 420..904 | 98 | | Plus |
BS09081.complete Sequence
1604 bp (1604 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636348
> BS09081.complete
GAAGTTATCAGTCGACATGCGGTCGTTGGTCTCGGTTGCTTTGTTATCTT
TGTTAACTTTGTGTGTTACAGAAAATGAACACTTTAAGTTTTTAGAGACT
CCTTGTGGGATATCAACCCGTCCCAAAATTAGCGGTGGTGACGATGCAGC
CGAGCCAAATTCTATATGGATGGCAGCGATATTCAATTCATCCGATTTTC
AATGCGGTGGCACAATTATACATATGCGTTTTGTGTTAAGTGCTGCTCAT
TGCTTGGTAAGAGGATATGATCTATACGTGAGGTTGGGGGCACGCAACAT
AAATGAGCCCGCTGCTGTCCACACAGTCATTAATGTCTTTGTGCACCATG
ACTTCATTGCATCGGAATACCGAAATGATATAGGACTGCTTCAACTGTCG
GAGAGTATCGTCTACACAGTTCGAGTTCAACCAATTTGCATCTTTTTGGA
TCCGGCTCTCAAAGGGAGTGTTGAAAAATTGAAAACGTTCAGAGCCCTTG
GCTGGGGAAATAGGAACGGAAAATTGAGCATAATGTTGCAAACCATCTAT
CTTCTACACTTGAAAAGAAATGAGTGCAAACGCAAATTGAACTTTAATCT
CAATTCAAGACAGATTTGCGCTGGAACCAAAAATGGAGACACCTGTAGAG
GCGATTCTGGGGGTCCCTTGTCCACGAATATATTGTTTCCTTCCAATAAA
AGTTATGAGGTGCAGTTAGGAATCGTAAGCTTTGGGGATCCAGAATGCCG
TGGAGTAGGAGTCTATACCGACGTGACCAGCTATGTGGATTGGATCTCAT
CGACAATAGCTAGAAATGACTACCTACCAATCGGCGTGTCCGGGGGAGAC
ATTGCCATGGGCAATCCCATTGCTCCTGACGCTAATCGGCACTGGACTCC
TGCGGCTTCACCACCACTTCCTTCGATGTTGTACAATAGCTGCAGTCAGG
ATATCGCGGCACCGATCGCGCAGCTAAGAATTTATTGGCCTGGTTCTTAT
GCCGTTGGCGTATTAATAACAGATCAATTGATCATCGCTGCTGCCACAGA
CCTGCCCACAGTTGCCGCCTATTTATACGTGTTCGTAGTGCTCGAAGGAA
TAAGCGCAATCAACCAAATTGAATCGGTTTCAAAGCACCCAAATTTTACT
ACGAATGATTACCGAAATGACATAGCAGTACTCAAACTTGTTCGATCAAT
AAGCAGCACAGCAATGAAACCCATCTGCATTTTGACAACGCAAATATACC
AGCAAAACGCCGAAAAGGCTCGAGAATTGAAAATAATTGATACAGATTTA
GCTGAACAATTCGACGTCAGGCTAATGGAAGGGAGCCAATGCGCGAAACA
TCTCGGATTTCAAATCAACGAAAATCAAGTGTGCATGGTAGATCCATCCG
ACACAAGTAATCCCCGCCAGAAACGTAGCTACATAGTGGTTGGAGGGATG
AATGCCAATGGCCAGATACGCTACATTTTGGTGGGCATTTTCAGTTTTTC
ATCGAAAAACATACTCGTTTTTACGAATGTTATGAGGCACACGGATTGGA
TTCTTTCCTTGCTATATTCGTTAAATACGTCATCTTAAAAGCTTTCTAGA
CCAT
BS09081.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:26:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10764-RA | 1572 | CG10764-PA | 1..1572 | 17..1588 | 7860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:26:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10764-RA | 1700 | CG10764-RA | 24..1597 | 17..1590 | 7870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:26:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17454224..17454832 | 417..1025 | 3045 | 100 | Plus |
2R | 25286936 | 2R | 17455244..17455626 | 1208..1590 | 1915 | 100 | Plus |
2R | 25286936 | 2R | 17453422..17453635 | 17..230 | 1070 | 100 | Plus |
2R | 25286936 | 2R | 17454029..17454174 | 274..419 | 730 | 100 | Plus |
2R | 25286936 | 2R | 17455053..17455189 | 1075..1211 | 685 | 100 | Plus |
2R | 25286936 | 2R | 17453896..17453953 | 228..285 | 245 | 94.8 | Plus |
2R | 25286936 | 2R | 17454909..17454957 | 1026..1074 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:26:04 has no hits.
BS09081.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:08 Download gff for
BS09081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10764-RA | 1..1572 | 17..1588 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:49 Download gff for
BS09081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10764-RA | 1..1582 | 14..1595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:51 Download gff for
BS09081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10764-RA | 24..1593 | 17..1586 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:08 Download gff for
BS09081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10764-RA | 1..1582 | 14..1595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:00 Download gff for
BS09081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10764-RA | 24..1593 | 17..1586 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:00 Download gff for
BS09081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17453422..17453632 | 17..227 | 100 | -> | Plus |
2R | 17453896..17453941 | 228..273 | 100 | -> | Plus |
2R | 17454029..17454174 | 274..419 | 100 | -> | Plus |
2R | 17454227..17454832 | 420..1025 | 100 | -> | Plus |
2R | 17454909..17454957 | 1026..1074 | 100 | -> | Plus |
2R | 17455053..17455189 | 1075..1211 | 100 | -> | Plus |
2R | 17455248..17455622 | 1212..1586 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:51 Download gff for
BS09081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13340927..13341137 | 17..227 | 100 | -> | Plus |
arm_2R | 13341401..13341446 | 228..273 | 100 | -> | Plus |
arm_2R | 13341534..13341679 | 274..419 | 100 | -> | Plus |
arm_2R | 13341732..13342337 | 420..1025 | 100 | -> | Plus |
arm_2R | 13342414..13342462 | 1026..1074 | 100 | -> | Plus |
arm_2R | 13342558..13342694 | 1075..1211 | 100 | -> | Plus |
arm_2R | 13342753..13343127 | 1212..1586 | 100 | | Plus |
BS09081.pep Sequence
Translation from 16 to 1587
> BS09081.pep
MRSLVSVALLSLLTLCVTENEHFKFLETPCGISTRPKISGGDDAAEPNSI
WMAAIFNSSDFQCGGTIIHMRFVLSAAHCLVRGYDLYVRLGARNINEPAA
VHTVINVFVHHDFIASEYRNDIGLLQLSESIVYTVRVQPICIFLDPALKG
SVEKLKTFRALGWGNRNGKLSIMLQTIYLLHLKRNECKRKLNFNLNSRQI
CAGTKNGDTCRGDSGGPLSTNILFPSNKSYEVQLGIVSFGDPECRGVGVY
TDVTSYVDWISSTIARNDYLPIGVSGGDIAMGNPIAPDANRHWTPAASPP
LPSMLYNSCSQDIAAPIAQLRIYWPGSYAVGVLITDQLIIAAATDLPTVA
AYLYVFVVLEGISAINQIESVSKHPNFTTNDYRNDIAVLKLVRSISSTAM
KPICILTTQIYQQNAEKARELKIIDTDLAEQFDVRLMEGSQCAKHLGFQI
NENQVCMVDPSDTSNPRQKRSYIVVGGMNANGQIRYILVGIFSFSSKNIL
VFTNVMRHTDWILSLLYSLNTSS*
BS09081.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10764-PA | 523 | CG10764-PA | 1..523 | 1..523 | 2715 | 100 | Plus |
CG30187-PD | 451 | CG30187-PD | 1..448 | 52..516 | 663 | 36 | Plus |
CG30187-PC | 440 | CG30187-PC | 1..437 | 52..516 | 627 | 35.4 | Plus |
CG43110-PA | 483 | CG43110-PA | 23..479 | 25..516 | 596 | 32 | Plus |
CG43110-PB | 483 | CG43110-PB | 23..479 | 25..516 | 596 | 32 | Plus |