Clone BS09081 Report

Search the DGRC for BS09081

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:90
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptCG10764-RA
Protein status:BS09081.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09081.3prime Sequence

891 bp (772 high quality bases) assembled on 2006-01-24

> BS09081.3prime
ATGGTCTAGAAAGCTTTTAAGATGACGTATTTAACGAATATAGCAAGGAA
AGAATCCAATCCGTGTGCCTCATAACATTCGTAAAAACGAGTATGTTTTT
CGATGAAAAACTGAAAATGCCCACCAAAATGTAGCGTATCTGGCCATTGG
CATTCATCCCTCCAACCACTATGTAGCTACGTTTCTGGCGGGGATTACTT
GTGTCGGATGGATCTACCATGCACACTTGATTTTCGTTGATTTGAAATCC
GAGATGTTTCGCGCATTGGCTCCCTTCCATTAGCCTGACGTCGAATTGTT
CAGCTAAATCTGTATCAATTATTTTCAATTCTCGAGCCTTTTCGGCGTTT
TGCTGGTATATTTGCGTTGTCAAAATGCAGATGGGTTTCATTGCTGTGCT
GCTTATTGATCGAACAAGTTTGAGTACTGCTATGTCATTTCGGTAATCAT
TCGTAGTAAAATTTGGGTGCTTTGAAACCGATTCAATTTGGTTGATTGCG
CTTATTCCTTCGAGCACTACGAACACGTATAAATAGGCGGCAACTGTGGG
CAGGTCTGTGGCAGCAGCGATGATCAATTGATCTGTTATTAATACGCCAA
CGGCATAAGAACCAGGCCAATAAATTCTTAGCTGCGCGATCGGTGCCGCG
ATATCCTGACTGCAGCTATTGTACAACATCGAAGGAAGTGGTGGTGAAGC
CGCAGGAGTCCAGTGCCGATTAGCGTCAGGAGCAATGGGATTGCCCATGG
CAATGTCTCCCCCGGACACGCCGATTGGTAGGTAGTCATTTCTAGCTATT
GTCGATGAGATCCAATCCACATAGCTGGTCACGTCGGTATAGACTCCTAC
TCCACGGCATTCTGGATCCCCAAAGCTTACGATTCCTAACT

BS09081.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:19:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG10764-PA 1572 CG10764-RA 698..1572 891..17 4375 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10764-RA 1700 CG10764-RA 721..1597 891..15 4385 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:33:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17455244..17455626 397..15 1915 100 Minus
2R 25286936 2R 17454521..17454832 891..580 1560 100 Minus
2R 25286936 2R 17455053..17455189 530..394 685 100 Minus
2R 25286936 2R 17454909..17454957 579..531 245 100 Minus
Blast to na_te.dros performed on 2015-01-31 14:33:38 has no hits.

BS09081.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:58:40 Download gff for BS09081.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10764-PA 698..1572 17..891 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:04:48 Download gff for BS09081.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10764-PA 698..1572 17..891 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:07:30 Download gff for BS09081.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10764-RA 721..1602 10..891 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:30:11 Download gff for BS09081.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10764-RA 721..1602 10..891 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:30:11 Download gff for BS09081.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17454521..17454832 580..891 100 -> Minus
2R 17454909..17454957 531..579 100 -> Minus
2R 17455053..17455189 394..530 100 -> Minus
2R 17455248..17455631 10..393 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:07:30 Download gff for BS09081.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13342026..13342337 580..891 100 -> Minus
arm_2R 13342414..13342462 531..579 100 -> Minus
arm_2R 13342558..13342694 394..530 100 -> Minus
arm_2R 13342753..13343136 10..393 99   Minus

BS09081.5prime Sequence

904 bp (754 high quality bases) assembled on 2006-01-24

> BS09081.5prime
GAAGTTATCAGTCGACATGCGGTCGTTGGTCTCGGTTGCTTTGTTATCTT
TGTTAACTTTGTGTGTTACAGAAAATGAACACTTTAAGTTTTTAGAGACT
CCTTGTGGGATATCAACCCGTCCCAAAATTAGCGGTGGTGACGATGCAGC
CGAGCCAAATTCTATATGGATGGCAGCGATATTCAATTCATCCGATTTTC
AATGCGGTGGCACAATTATACATATGCGTTTTGTGTTAAGTGCTGCTCAT
TGCTTGGTAAGAGGATATGATCTATACGTGAGGTTGGGGGCACGCAACAT
AAATGAGCCCGCTGCTGTCCACACAGTCATTAATGTCTTTGTGCACCATG
ACTTCATTGCATCGGAATACCGAAATGATATAGGACTGCTTCAACTGTCG
GAGAGTATCGTCTACACAGTTCGAGTTCAACCAATTTGCATCTTTTTGGA
TCCGGCTCTCAAAGGGAGTGTTGAAAAATTGAAAACGTTCAGAGCCCTTG
GCTGGGGAAATAGGAACGGAAAATTGAGCATAATGTTGCAAACCATCTAT
CTTCTACACTTGAAAAGAAATGAGTGCAAACGCAAATTGAACTTTAATCT
CAATTCAAGACAGATTTGCGCTGGAACCAAAAATGGAGACACCTGTAGAG
GCGATTCTGGGGGTCCCTTGTCCACGAATATATTGTTTCCTTCCAATAAA
AGTTATGAGGTGCAGTTAGGAATCGTAAGCTTTGGGGATCCAGAATGCCG
TGGAGTAGGAGTCTATACCGACGTGACCAGCTATGTGGATTGGATCTCAT
CGACNATAGCTAGAAATGACTACCTACCAATCGGCGTGTCCGGGGGAGAC
ATTGCATGGGCAATCCATTGCTTCTGACGCTATCGGCACTGGACTCCTGC
GGCT

BS09081.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG10764-PA 1572 CG10764-RA 1..839 17..855 4176 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG10764-RA 1700 CG10764-RA 24..914 17..904 4354 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17454224..17454714 417..904 2279 99 Plus
2R 25286936 2R 17453422..17453635 17..230 1070 100 Plus
2R 25286936 2R 17454029..17454174 274..419 730 100 Plus
2R 25286936 2R 17453896..17453953 228..285 245 94.8 Plus
Blast to na_te.dros performed on 2015-02-10 02:03:13 has no hits.

BS09081.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:58:41 Download gff for BS09081.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10764-PA 1..891 17..904 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:04:49 Download gff for BS09081.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10764-PA 1..891 17..904 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:36:42 Download gff for BS09081.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10764-RA 21..914 14..904 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:05:23 Download gff for BS09081.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10764-RA 21..914 14..904 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:05:23 Download gff for BS09081.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17453419..17453632 14..227 99 -> Plus
2R 17453896..17453941 228..273 100 -> Plus
2R 17454029..17454174 274..419 100 -> Plus
2R 17454227..17454714 420..904 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:36:42 Download gff for BS09081.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13340924..13341137 14..227 99 -> Plus
arm_2R 13341401..13341446 228..273 100 -> Plus
arm_2R 13341534..13341679 274..419 100 -> Plus
arm_2R 13341732..13342219 420..904 98   Plus

BS09081.complete Sequence

1604 bp (1604 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636348

> BS09081.complete
GAAGTTATCAGTCGACATGCGGTCGTTGGTCTCGGTTGCTTTGTTATCTT
TGTTAACTTTGTGTGTTACAGAAAATGAACACTTTAAGTTTTTAGAGACT
CCTTGTGGGATATCAACCCGTCCCAAAATTAGCGGTGGTGACGATGCAGC
CGAGCCAAATTCTATATGGATGGCAGCGATATTCAATTCATCCGATTTTC
AATGCGGTGGCACAATTATACATATGCGTTTTGTGTTAAGTGCTGCTCAT
TGCTTGGTAAGAGGATATGATCTATACGTGAGGTTGGGGGCACGCAACAT
AAATGAGCCCGCTGCTGTCCACACAGTCATTAATGTCTTTGTGCACCATG
ACTTCATTGCATCGGAATACCGAAATGATATAGGACTGCTTCAACTGTCG
GAGAGTATCGTCTACACAGTTCGAGTTCAACCAATTTGCATCTTTTTGGA
TCCGGCTCTCAAAGGGAGTGTTGAAAAATTGAAAACGTTCAGAGCCCTTG
GCTGGGGAAATAGGAACGGAAAATTGAGCATAATGTTGCAAACCATCTAT
CTTCTACACTTGAAAAGAAATGAGTGCAAACGCAAATTGAACTTTAATCT
CAATTCAAGACAGATTTGCGCTGGAACCAAAAATGGAGACACCTGTAGAG
GCGATTCTGGGGGTCCCTTGTCCACGAATATATTGTTTCCTTCCAATAAA
AGTTATGAGGTGCAGTTAGGAATCGTAAGCTTTGGGGATCCAGAATGCCG
TGGAGTAGGAGTCTATACCGACGTGACCAGCTATGTGGATTGGATCTCAT
CGACAATAGCTAGAAATGACTACCTACCAATCGGCGTGTCCGGGGGAGAC
ATTGCCATGGGCAATCCCATTGCTCCTGACGCTAATCGGCACTGGACTCC
TGCGGCTTCACCACCACTTCCTTCGATGTTGTACAATAGCTGCAGTCAGG
ATATCGCGGCACCGATCGCGCAGCTAAGAATTTATTGGCCTGGTTCTTAT
GCCGTTGGCGTATTAATAACAGATCAATTGATCATCGCTGCTGCCACAGA
CCTGCCCACAGTTGCCGCCTATTTATACGTGTTCGTAGTGCTCGAAGGAA
TAAGCGCAATCAACCAAATTGAATCGGTTTCAAAGCACCCAAATTTTACT
ACGAATGATTACCGAAATGACATAGCAGTACTCAAACTTGTTCGATCAAT
AAGCAGCACAGCAATGAAACCCATCTGCATTTTGACAACGCAAATATACC
AGCAAAACGCCGAAAAGGCTCGAGAATTGAAAATAATTGATACAGATTTA
GCTGAACAATTCGACGTCAGGCTAATGGAAGGGAGCCAATGCGCGAAACA
TCTCGGATTTCAAATCAACGAAAATCAAGTGTGCATGGTAGATCCATCCG
ACACAAGTAATCCCCGCCAGAAACGTAGCTACATAGTGGTTGGAGGGATG
AATGCCAATGGCCAGATACGCTACATTTTGGTGGGCATTTTCAGTTTTTC
ATCGAAAAACATACTCGTTTTTACGAATGTTATGAGGCACACGGATTGGA
TTCTTTCCTTGCTATATTCGTTAAATACGTCATCTTAAAAGCTTTCTAGA
CCAT

BS09081.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10764-RA 1572 CG10764-PA 1..1572 17..1588 7860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:26:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10764-RA 1700 CG10764-RA 24..1597 17..1590 7870 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:26:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17454224..17454832 417..1025 3045 100 Plus
2R 25286936 2R 17455244..17455626 1208..1590 1915 100 Plus
2R 25286936 2R 17453422..17453635 17..230 1070 100 Plus
2R 25286936 2R 17454029..17454174 274..419 730 100 Plus
2R 25286936 2R 17455053..17455189 1075..1211 685 100 Plus
2R 25286936 2R 17453896..17453953 228..285 245 94.8 Plus
2R 25286936 2R 17454909..17454957 1026..1074 245 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:26:04 has no hits.

BS09081.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:08 Download gff for BS09081.complete
Subject Subject Range Query Range Percent Splice Strand
CG10764-RA 1..1572 17..1588 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:49 Download gff for BS09081.complete
Subject Subject Range Query Range Percent Splice Strand
CG10764-RA 1..1582 14..1595 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:51 Download gff for BS09081.complete
Subject Subject Range Query Range Percent Splice Strand
CG10764-RA 24..1593 17..1586 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:08 Download gff for BS09081.complete
Subject Subject Range Query Range Percent Splice Strand
CG10764-RA 1..1582 14..1595 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:00 Download gff for BS09081.complete
Subject Subject Range Query Range Percent Splice Strand
CG10764-RA 24..1593 17..1586 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:00 Download gff for BS09081.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17453422..17453632 17..227 100 -> Plus
2R 17453896..17453941 228..273 100 -> Plus
2R 17454029..17454174 274..419 100 -> Plus
2R 17454227..17454832 420..1025 100 -> Plus
2R 17454909..17454957 1026..1074 100 -> Plus
2R 17455053..17455189 1075..1211 100 -> Plus
2R 17455248..17455622 1212..1586 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:51 Download gff for BS09081.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13340927..13341137 17..227 100 -> Plus
arm_2R 13341401..13341446 228..273 100 -> Plus
arm_2R 13341534..13341679 274..419 100 -> Plus
arm_2R 13341732..13342337 420..1025 100 -> Plus
arm_2R 13342414..13342462 1026..1074 100 -> Plus
arm_2R 13342558..13342694 1075..1211 100 -> Plus
arm_2R 13342753..13343127 1212..1586 100   Plus

BS09081.pep Sequence

Translation from 16 to 1587

> BS09081.pep
MRSLVSVALLSLLTLCVTENEHFKFLETPCGISTRPKISGGDDAAEPNSI
WMAAIFNSSDFQCGGTIIHMRFVLSAAHCLVRGYDLYVRLGARNINEPAA
VHTVINVFVHHDFIASEYRNDIGLLQLSESIVYTVRVQPICIFLDPALKG
SVEKLKTFRALGWGNRNGKLSIMLQTIYLLHLKRNECKRKLNFNLNSRQI
CAGTKNGDTCRGDSGGPLSTNILFPSNKSYEVQLGIVSFGDPECRGVGVY
TDVTSYVDWISSTIARNDYLPIGVSGGDIAMGNPIAPDANRHWTPAASPP
LPSMLYNSCSQDIAAPIAQLRIYWPGSYAVGVLITDQLIIAAATDLPTVA
AYLYVFVVLEGISAINQIESVSKHPNFTTNDYRNDIAVLKLVRSISSTAM
KPICILTTQIYQQNAEKARELKIIDTDLAEQFDVRLMEGSQCAKHLGFQI
NENQVCMVDPSDTSNPRQKRSYIVVGGMNANGQIRYILVGIFSFSSKNIL
VFTNVMRHTDWILSLLYSLNTSS*

BS09081.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG10764-PA 523 CG10764-PA 1..523 1..523 2715 100 Plus
CG30187-PD 451 CG30187-PD 1..448 52..516 663 36 Plus
CG30187-PC 440 CG30187-PC 1..437 52..516 627 35.4 Plus
CG43110-PA 483 CG43110-PA 23..479 25..516 596 32 Plus
CG43110-PB 483 CG43110-PB 23..479 25..516 596 32 Plus