Clone BS09085 Report

Search the DGRC for BS09085

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:90
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptCG6296-RA
Protein status:BS09085.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09085.3prime Sequence

924 bp (783 high quality bases) assembled on 2006-01-24

> BS09085.3prime
ATGGTCTAGAAAGCTTTCAACTTTTGTTTTCTATCTTTACATTCACCAAA
AACACGTTAAAAATGAAGATGTTCTTGGTATTTCCATCTTGTGGTGGTGA
TGTTGACGGAACTTCTGGAGCCAGAGTGGTAATGGGAACTTCAGGAGGAA
CACCCGTTGTCGAAGGTAGCTTAGTGGGCACAGCGGTTGTGGATACATCC
TCGAGGTCCTCCCTTGTCGATTGGTCACCTTCTGGATCAACAGTACTATC
AACATCCGGTTCAACGGTAGTCGTTACTTCTGGTTCTGCGTTTGTTGTAG
ATGTCTCCTTATCGGGTTCTTCTGTTGTAGACTCCTCGGGAACTTCAGTA
GTCGAATCCTCAGGTTCTTCGGTTGTAGTTGAGGGTTCTACTGGCTTTTT
GGTCGTTGTAGTATCTTCTTCGGGCTCCTCGGTTGTTGAATCATCAGCAT
CACTGGGTGATGTAGTGGTCTCTTCGGGGTCCTCGGTGGTTGTTTCCTCT
TCGTCACCTCCTGGAGCTGCGGTAGTATCATCATCTTCGCCAGGTGCTGA
CGTAGTATCATCATCTTCAGGACTTGAAGTGGTGGACTCCTCGGATTCCT
TGGGGGTAGTAGAAACATCTTCAGGCTCCTTAGTTGTTGAATCCTCAGTA
TCAATTGGTGATGTAGAGGTCTCTTCGGGCTTCTCTGTGGTCGTTTCCGG
CTCTTCAGTCGTTGATTGCTCTCCTCCGTCTGTTGGAGAAGAGGTCGTAC
TTTCGTCTTCTGGGGCTTCCGTAGTCGAATCTATTGGTTCTTCGGTTGTA
GTAGTCGAGTCTTCGGGCTGTTCGGTTGTAGTAGAGGATTCTTCGGGCTT
TCCGTTTGTTGTGGAATCCTCTTCGGGCTCTTCGGTTGTCGACTCCTCTG
GCTTATCCGGTGTCGTCAATGTGG

BS09085.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6296-PA 2031 CG6296-RA 1124..2031 924..17 4490 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6296-RA 2127 CG6296-RA 1136..2044 924..16 4515 99.8 Minus
CG6296-RA 2127 CG6296-RA 1362..1442 497..417 225 85.2 Minus
CG6296-RA 2127 CG6296-RA 1563..1643 698..618 225 85.2 Minus
CG6296-RA 2127 CG6296-RA 1171..1260 436..347 195 81.1 Minus
CG6296-RA 2127 CG6296-RA 1624..1713 889..800 195 81.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27003319..27004227 16..924 4515 99.8 Plus
3R 32079331 3R 27003720..27003800 618..698 225 85.2 Plus
3R 32079331 3R 27003921..27004001 417..497 225 85.2 Plus
3R 32079331 3R 27004103..27004192 347..436 195 81.1 Plus
3R 32079331 3R 27003650..27003739 800..889 195 81.1 Plus
Blast to na_te.dros performed on 2015-02-10 18:59:14 has no hits.

BS09085.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:58:50 Download gff for BS09085.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6296-PA 1124..2031 17..924 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:05:00 Download gff for BS09085.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6296-PA 1124..2031 17..924 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:53:45 Download gff for BS09085.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6296-RA 1136..2044 16..924 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:00 Download gff for BS09085.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6296-RA 1136..2044 16..924 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:00 Download gff for BS09085.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27003319..27004227 16..924 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:53:45 Download gff for BS09085.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22829041..22829949 16..924 99   Plus

BS09085.5prime Sequence

905 bp (844 high quality bases) assembled on 2006-01-24

> BS09085.5prime
GAAGTTATCAGTCGACATGAGATTGTGCCTTCTTGTGCTGGGCTGCGTGA
TAGCTGCCAGCGCCTGGCCGGTCGACCAACTTTCGGTTCGAGATCATGGC
ATCAATGGTTGGTTTGTCCCTCAAAGGGAAGGTGGCCTAAGATGGATTGG
TAAGGCGGAGGCGGAGCGCCAGTTGGAATACTACGAGGCTCAGGAGGCGT
TGGAAGGTCGTCTGTCCACCAACACGGTTAACTTCTACCTTTACACGCTG
CAGAATCCTAGTACAGGACAACAGATCAAGGCTACCCAAGACTCCATCGA
TGGTTCTTTTTTCAATCCTCAAAATCCAACTAGAATCACCATTCACGGTT
GGAACTCGAACTACAAGGATGGGGTGAACACCAGGGTAGCCGATGCTTGG
TTCCAGTACGGCGACTACAACATGATCGCAGTAGACTGGCTTCGTGGACG
TTCCTTGGAATACGCTTCCTCTGTGGCCGGAGCCCCAGGAGCTGGAAAGA
AAGTAGCCGCACTTGTGGACTTCCTAGTGGAGGGATACGGCATGAGCTTG
GACACTCTGGAAATTGTGGGCTTCAGTTTGGGCGCCCACGTTGCAGGACA
CACCGCCAAGCAGGTGAACTCTGGCAAGGTGGGAAAAGTCGTGGGCTTGG
ATCCCGCCTCCCCCCTGATCAGTTACTCAAACACCGAAAAGCGTCTGTCC
AGCGATGATGCATTATATGTGGAGTCAATCCAGACAAACGGTGCCATTTT
GGGCTTCGGCCAGCCAATTGGAAAAGCTTCCTTCTACATGAACGGTGGTA
GATCACAGCCTGGTTGTGGTATCGATATAACCGGCAGTTGCTCACACACC
AAAGCTGTTCTGTATTACGTGGAGGCGCTGCTGTGGAACAACTTTTCCTC
GATAA

BS09085.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG6296-PA 2031 CG6296-RA 1..879 17..895 4395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6296-RA 2127 CG6296-RA 13..901 17..905 4415 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27004462..27005036 905..331 2845 99.7 Minus
3R 32079331 3R 27005087..27005364 333..56 1390 100 Minus
3R 32079331 3R 27005418..27005457 56..17 200 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:29:31 has no hits.

BS09085.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:58:51 Download gff for BS09085.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6296-PA 1..887 17..903 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:05:01 Download gff for BS09085.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6296-PA 1..887 17..903 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:24:17 Download gff for BS09085.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6296-RA 2..901 8..905 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:47:18 Download gff for BS09085.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6296-RA 2..901 8..905 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:47:18 Download gff for BS09085.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27004462..27005033 334..905 99 <- Minus
3R 27005087..27005363 57..333 100 <- Minus
3R 27005418..27005463 8..56 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:24:17 Download gff for BS09085.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22830184..22830755 334..905 99 <- Minus
arm_3R 22830809..22831085 57..333 100 <- Minus
arm_3R 22831140..22831185 8..56 91   Minus

BS09085.complete Sequence

2063 bp assembled on 2008-01-16

GenBank Submission: FJ636349

> BS09085.complete
GAAGTTATCAGTCGACATGAGATTGTGCCTTCTTGTGCTGGGCTGCGTGA
TAGCTGCCAGCGCCTGGCCGGTCGACCAACTTTCGGTTCGAGATCATGGC
ATCAATGGTTGGTTTGTCCCTCAAAGGGAAGGTGGCCTAAGATGGATTGG
TAAGGCGGAGGCGGAGCGCCAGTTGGAATACTACGAGGCTCAGGAGGCGT
TGGAAGGTCGTCTGTCCACCAACACGGTTAACTTCTACCTTTACACGCTG
CAGAATCCTAGTACAGGACAACAGATCAAGGCTACCCAAGACTCCATCGA
TGGTTCTTTTTTCAATCCTCAAAATCCAACTAGAATCACCATTCACGGTT
GGAACTCGAACTACAAGGATGGGGTGAACACCAGGGTAGCCGATGCTTGG
TTCCAGTACGGCGACTACAACATGATCGCAGTAGACTGGCTTCGTGGACG
TTCCTTGGAATACGCTTCCTCTGTGGCCGGAGCCCCAGGAGCTGGAAAGA
AAGTAGCCGCACTTGTGGACTTCCTAGTGGAGGGATACGGCATGAGCTTG
GACACTCTGGAAATTGTGGGCTTCAGTTTGGGCGCCCACGTTGCAGGACA
CACCGCCAAGCAGGTGAACTCTGGCAAGGTGGGAAAAGTCGTGGGCTTGG
ATCCCGCCTCCCCCCTGATCAGTTACTCAAACACCGAAAAGCGTCTGTCC
AGCGATGATGCATTATATGTGGAGTCAATCCAGACAAACGGTGCCATTTT
GGGCTTCGGCCAGCCAATTGGAAAAGCTTCCTTCTACATGAACGGTGGTA
GATCACAGCCTGGTTGTGGTATCGATATAACCGGCAGTTGCTCACACACC
AAAGCTGTTCTGTATTACGTGGAGGCGCTGCTGTGGAACAACTTTCCTTC
GATAAAGTGCGAATCCTCCGTGGACGCCAACAAGAACAACTGTGGCAATA
CATACAGTTCAGTCTTTATGGGTGCTTCCATAAACTTCTTTGTCGCAGAA
GGTATCTTCTATGTGCCGGTAAACAAGGAATCCCCTTACGGACTTGGAGA
ACTGAACAGTGGCGGAGAGGCTACAACTGGTACTCCTGAAATTACTTCTA
CTACTGTTGATGGTGAAGATGAGTCGACGACTGAGGTCTCCACATCGACG
ACAACGGATAAGCCAGAGGAGTCGACAACCGAAGAGCCCGAAGAGGATTC
CACAACAAACGGAAAGCCCGAAGAATCCTCTACTACAACCGAACAGCCCG
AAGACTCGACTACTACAACCGAAGAACCAATAGATTCGACTACGGAAGCC
CCAGAAGACGAAAGTACGACCTCTTCTCCAACAGACGGAGGAGAGCAATC
AACGACTGAAGAGCCGGAAACGACCACAGAGAAGCCCGAAGAGACCTCTA
CATCACCAATTGATACTGAGGATTCAACAACTAAGGAGCCTGAAGATGTT
TCTACTACCCCCAAGGAATCCGAGGAGTCCACCACTTCAAGTCCTGAAGA
TGATGATACTACGTCAGCACCTGGCGAAGATGATGATACTACCGCAGCTC
CAGGAGGTGACGAAGAGGAAACAACCACCGAGGACCCCGAAGAGACCACT
ACATCACCCAGTGATGCTGATGATTCAACAACCGAGGAGCCCGAAGAAGA
TACTACAACGACCAAAAAGCCAGTAGAACCCTCAACTACAACCGAAGAAC
CTGAGGATTCGACTACTGAAGTTCCCGAGGAGTCTACAACAGAAGAACCC
GATAAGGAGACATCTACAACAAACGCAGAACCAGAAGTAACGACTACCGT
TGAACCGGATGTTGATAGTACTGTTGATCCAGAAGGTGACCAATCGACAA
GGGAGGACCTCGAGGATGTATCCACAACCGCTGTGCCCACTAAGCTACCT
TCGACAACGGGTGTTCCTCCTGAAGTTCCCATTACCACTCTGGCTCCAGA
AGTTCCGTCAACATCACCACCACAAGATGGAAATACCAAGAACATCTTCA
TTTTTAACGTGTTTTTGGTGAATGTAAAGATAGAAAACAAAAGTTGAAAG
CTTTCTAGACCAT

BS09085.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6296-RA 2031 CG6296-PA 1..2031 17..2047 10155 100 Plus
CG6296-RA 2031 CG6296-PA 1350..1430 1567..1647 225 85.2 Plus
CG6296-RA 2031 CG6296-PA 1551..1631 1366..1446 225 85.2 Plus
CG6296-RA 2031 CG6296-PA 1159..1248 1628..1717 195 81.1 Plus
CG6296-RA 2031 CG6296-PA 1612..1701 1175..1264 195 81.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG6296-RA 2127 CG6296-RA 13..2044 17..2048 10160 100 Plus
CG6296-RA 2127 CG6296-RA 1362..1442 1567..1647 225 85.2 Plus
CG6296-RA 2127 CG6296-RA 1563..1643 1366..1446 225 85.2 Plus
CG6296-RA 2127 CG6296-RA 1171..1260 1628..1717 195 81.1 Plus
CG6296-RA 2127 CG6296-RA 1624..1713 1175..1264 195 81.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27003319..27005036 2048..331 8590 100 Minus
3R 32079331 3R 27005087..27005364 333..56 1390 100 Minus
3R 32079331 3R 27003720..27003800 1446..1366 225 85.2 Minus
3R 32079331 3R 27003921..27004001 1647..1567 225 85.2 Minus
3R 32079331 3R 27005418..27005457 56..17 200 100 Minus
3R 32079331 3R 27003650..27003739 1264..1175 195 81.1 Minus
3R 32079331 3R 27004103..27004192 1717..1628 195 81.1 Minus
Blast to na_te.dros performed on 2014-11-26 14:41:08 has no hits.

BS09085.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:00 Download gff for BS09085.complete
Subject Subject Range Query Range Percent Splice Strand
CG6296-RA 1..2031 17..2047 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:37:05 Download gff for BS09085.complete
Subject Subject Range Query Range Percent Splice Strand
CG6296-RA 13..2027 17..2031 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:25 Download gff for BS09085.complete
Subject Subject Range Query Range Percent Splice Strand
CG6296-RA 13..2027 17..2031 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:10:00 Download gff for BS09085.complete
Subject Subject Range Query Range Percent Splice Strand
CG6296-RA 2..2044 8..2048 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:58:12 Download gff for BS09085.complete
Subject Subject Range Query Range Percent Splice Strand
CG6296-RA 13..2027 17..2031 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:58:12 Download gff for BS09085.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27003336..27005033 334..2031 100 <- Minus
3R 27005087..27005363 57..333 100 <- Minus
3R 27005418..27005457 17..56 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:25 Download gff for BS09085.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22829058..22830755 334..2031 100 <- Minus
arm_3R 22830809..22831085 57..333 100 <- Minus
arm_3R 22831140..22831179 17..56 100   Minus

BS09085.pep Sequence

Translation from 16 to 2046

> BS09085.pep
MRLCLLVLGCVIAASAWPVDQLSVRDHGINGWFVPQREGGLRWIGKAEAE
RQLEYYEAQEALEGRLSTNTVNFYLYTLQNPSTGQQIKATQDSIDGSFFN
PQNPTRITIHGWNSNYKDGVNTRVADAWFQYGDYNMIAVDWLRGRSLEYA
SSVAGAPGAGKKVAALVDFLVEGYGMSLDTLEIVGFSLGAHVAGHTAKQV
NSGKVGKVVGLDPASPLISYSNTEKRLSSDDALYVESIQTNGAILGFGQP
IGKASFYMNGGRSQPGCGIDITGSCSHTKAVLYYVEALLWNNFPSIKCES
SVDANKNNCGNTYSSVFMGASINFFVAEGIFYVPVNKESPYGLGELNSGG
EATTGTPEITSTTVDGEDESTTEVSTSTTTDKPEESTTEEPEEDSTTNGK
PEESSTTTEQPEDSTTTTEEPIDSTTEAPEDESTTSSPTDGGEQSTTEEP
ETTTEKPEETSTSPIDTEDSTTKEPEDVSTTPKESEESTTSSPEDDDTTS
APGEDDDTTAAPGGDEEETTTEDPEETTTSPSDADDSTTEEPEEDTTTTK
KPVEPSTTTEEPEDSTTEVPEESTTEEPDKETSTTNAEPEVTTTVEPDVD
STVDPEGDQSTREDLEDVSTTAVPTKLPSTTGVPPEVPITTLAPEVPSTS
PPQDGNTKNIFIFNVFLVNVKIENKS*

BS09085.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:26:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG6296-PA 676 CG6296-PA 1..676 1..676 3531 100 Plus
CG6295-PA 338 CG6295-PA 2..337 1..344 957 51.5 Plus
CG6283-PA 339 CG6283-PA 1..336 1..342 953 52.3 Plus
CG17192-PA 337 CG17192-PA 1..337 1..345 901 48.7 Plus
CG6277-PA 341 CG6277-PA 1..339 1..343 899 50 Plus