Clone Sequence Records
BS09085.3prime Sequence
924 bp (783 high quality bases) assembled on 2006-01-24
> BS09085.3prime
ATGGTCTAGAAAGCTTTCAACTTTTGTTTTCTATCTTTACATTCACCAAA
AACACGTTAAAAATGAAGATGTTCTTGGTATTTCCATCTTGTGGTGGTGA
TGTTGACGGAACTTCTGGAGCCAGAGTGGTAATGGGAACTTCAGGAGGAA
CACCCGTTGTCGAAGGTAGCTTAGTGGGCACAGCGGTTGTGGATACATCC
TCGAGGTCCTCCCTTGTCGATTGGTCACCTTCTGGATCAACAGTACTATC
AACATCCGGTTCAACGGTAGTCGTTACTTCTGGTTCTGCGTTTGTTGTAG
ATGTCTCCTTATCGGGTTCTTCTGTTGTAGACTCCTCGGGAACTTCAGTA
GTCGAATCCTCAGGTTCTTCGGTTGTAGTTGAGGGTTCTACTGGCTTTTT
GGTCGTTGTAGTATCTTCTTCGGGCTCCTCGGTTGTTGAATCATCAGCAT
CACTGGGTGATGTAGTGGTCTCTTCGGGGTCCTCGGTGGTTGTTTCCTCT
TCGTCACCTCCTGGAGCTGCGGTAGTATCATCATCTTCGCCAGGTGCTGA
CGTAGTATCATCATCTTCAGGACTTGAAGTGGTGGACTCCTCGGATTCCT
TGGGGGTAGTAGAAACATCTTCAGGCTCCTTAGTTGTTGAATCCTCAGTA
TCAATTGGTGATGTAGAGGTCTCTTCGGGCTTCTCTGTGGTCGTTTCCGG
CTCTTCAGTCGTTGATTGCTCTCCTCCGTCTGTTGGAGAAGAGGTCGTAC
TTTCGTCTTCTGGGGCTTCCGTAGTCGAATCTATTGGTTCTTCGGTTGTA
GTAGTCGAGTCTTCGGGCTGTTCGGTTGTAGTAGAGGATTCTTCGGGCTT
TCCGTTTGTTGTGGAATCCTCTTCGGGCTCTTCGGTTGTCGACTCCTCTG
GCTTATCCGGTGTCGTCAATGTGG
BS09085.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6296-PA | 2031 | CG6296-RA | 1124..2031 | 924..17 | 4490 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6296-RA | 2127 | CG6296-RA | 1136..2044 | 924..16 | 4515 | 99.8 | Minus |
CG6296-RA | 2127 | CG6296-RA | 1362..1442 | 497..417 | 225 | 85.2 | Minus |
CG6296-RA | 2127 | CG6296-RA | 1563..1643 | 698..618 | 225 | 85.2 | Minus |
CG6296-RA | 2127 | CG6296-RA | 1171..1260 | 436..347 | 195 | 81.1 | Minus |
CG6296-RA | 2127 | CG6296-RA | 1624..1713 | 889..800 | 195 | 81.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27003319..27004227 | 16..924 | 4515 | 99.8 | Plus |
3R | 32079331 | 3R | 27003720..27003800 | 618..698 | 225 | 85.2 | Plus |
3R | 32079331 | 3R | 27003921..27004001 | 417..497 | 225 | 85.2 | Plus |
3R | 32079331 | 3R | 27004103..27004192 | 347..436 | 195 | 81.1 | Plus |
3R | 32079331 | 3R | 27003650..27003739 | 800..889 | 195 | 81.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:59:14 has no hits.
BS09085.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:58:50 Download gff for
BS09085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6296-PA | 1124..2031 | 17..924 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:05:00 Download gff for
BS09085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6296-PA | 1124..2031 | 17..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:53:45 Download gff for
BS09085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6296-RA | 1136..2044 | 16..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:00 Download gff for
BS09085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6296-RA | 1136..2044 | 16..924 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:00 Download gff for
BS09085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27003319..27004227 | 16..924 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:53:45 Download gff for
BS09085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22829041..22829949 | 16..924 | 99 | | Plus |
BS09085.5prime Sequence
905 bp (844 high quality bases) assembled on 2006-01-24
> BS09085.5prime
GAAGTTATCAGTCGACATGAGATTGTGCCTTCTTGTGCTGGGCTGCGTGA
TAGCTGCCAGCGCCTGGCCGGTCGACCAACTTTCGGTTCGAGATCATGGC
ATCAATGGTTGGTTTGTCCCTCAAAGGGAAGGTGGCCTAAGATGGATTGG
TAAGGCGGAGGCGGAGCGCCAGTTGGAATACTACGAGGCTCAGGAGGCGT
TGGAAGGTCGTCTGTCCACCAACACGGTTAACTTCTACCTTTACACGCTG
CAGAATCCTAGTACAGGACAACAGATCAAGGCTACCCAAGACTCCATCGA
TGGTTCTTTTTTCAATCCTCAAAATCCAACTAGAATCACCATTCACGGTT
GGAACTCGAACTACAAGGATGGGGTGAACACCAGGGTAGCCGATGCTTGG
TTCCAGTACGGCGACTACAACATGATCGCAGTAGACTGGCTTCGTGGACG
TTCCTTGGAATACGCTTCCTCTGTGGCCGGAGCCCCAGGAGCTGGAAAGA
AAGTAGCCGCACTTGTGGACTTCCTAGTGGAGGGATACGGCATGAGCTTG
GACACTCTGGAAATTGTGGGCTTCAGTTTGGGCGCCCACGTTGCAGGACA
CACCGCCAAGCAGGTGAACTCTGGCAAGGTGGGAAAAGTCGTGGGCTTGG
ATCCCGCCTCCCCCCTGATCAGTTACTCAAACACCGAAAAGCGTCTGTCC
AGCGATGATGCATTATATGTGGAGTCAATCCAGACAAACGGTGCCATTTT
GGGCTTCGGCCAGCCAATTGGAAAAGCTTCCTTCTACATGAACGGTGGTA
GATCACAGCCTGGTTGTGGTATCGATATAACCGGCAGTTGCTCACACACC
AAAGCTGTTCTGTATTACGTGGAGGCGCTGCTGTGGAACAACTTTTCCTC
GATAA
BS09085.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6296-PA | 2031 | CG6296-RA | 1..879 | 17..895 | 4395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:29:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6296-RA | 2127 | CG6296-RA | 13..901 | 17..905 | 4415 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:29:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27004462..27005036 | 905..331 | 2845 | 99.7 | Minus |
3R | 32079331 | 3R | 27005087..27005364 | 333..56 | 1390 | 100 | Minus |
3R | 32079331 | 3R | 27005418..27005457 | 56..17 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:29:31 has no hits.
BS09085.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:58:51 Download gff for
BS09085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6296-PA | 1..887 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:05:01 Download gff for
BS09085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6296-PA | 1..887 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:24:17 Download gff for
BS09085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6296-RA | 2..901 | 8..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:47:18 Download gff for
BS09085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6296-RA | 2..901 | 8..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:47:18 Download gff for
BS09085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27004462..27005033 | 334..905 | 99 | <- | Minus |
3R | 27005087..27005363 | 57..333 | 100 | <- | Minus |
3R | 27005418..27005463 | 8..56 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:24:17 Download gff for
BS09085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22830184..22830755 | 334..905 | 99 | <- | Minus |
arm_3R | 22830809..22831085 | 57..333 | 100 | <- | Minus |
arm_3R | 22831140..22831185 | 8..56 | 91 | | Minus |
BS09085.complete Sequence
2063 bp assembled on 2008-01-16
GenBank Submission: FJ636349
> BS09085.complete
GAAGTTATCAGTCGACATGAGATTGTGCCTTCTTGTGCTGGGCTGCGTGA
TAGCTGCCAGCGCCTGGCCGGTCGACCAACTTTCGGTTCGAGATCATGGC
ATCAATGGTTGGTTTGTCCCTCAAAGGGAAGGTGGCCTAAGATGGATTGG
TAAGGCGGAGGCGGAGCGCCAGTTGGAATACTACGAGGCTCAGGAGGCGT
TGGAAGGTCGTCTGTCCACCAACACGGTTAACTTCTACCTTTACACGCTG
CAGAATCCTAGTACAGGACAACAGATCAAGGCTACCCAAGACTCCATCGA
TGGTTCTTTTTTCAATCCTCAAAATCCAACTAGAATCACCATTCACGGTT
GGAACTCGAACTACAAGGATGGGGTGAACACCAGGGTAGCCGATGCTTGG
TTCCAGTACGGCGACTACAACATGATCGCAGTAGACTGGCTTCGTGGACG
TTCCTTGGAATACGCTTCCTCTGTGGCCGGAGCCCCAGGAGCTGGAAAGA
AAGTAGCCGCACTTGTGGACTTCCTAGTGGAGGGATACGGCATGAGCTTG
GACACTCTGGAAATTGTGGGCTTCAGTTTGGGCGCCCACGTTGCAGGACA
CACCGCCAAGCAGGTGAACTCTGGCAAGGTGGGAAAAGTCGTGGGCTTGG
ATCCCGCCTCCCCCCTGATCAGTTACTCAAACACCGAAAAGCGTCTGTCC
AGCGATGATGCATTATATGTGGAGTCAATCCAGACAAACGGTGCCATTTT
GGGCTTCGGCCAGCCAATTGGAAAAGCTTCCTTCTACATGAACGGTGGTA
GATCACAGCCTGGTTGTGGTATCGATATAACCGGCAGTTGCTCACACACC
AAAGCTGTTCTGTATTACGTGGAGGCGCTGCTGTGGAACAACTTTCCTTC
GATAAAGTGCGAATCCTCCGTGGACGCCAACAAGAACAACTGTGGCAATA
CATACAGTTCAGTCTTTATGGGTGCTTCCATAAACTTCTTTGTCGCAGAA
GGTATCTTCTATGTGCCGGTAAACAAGGAATCCCCTTACGGACTTGGAGA
ACTGAACAGTGGCGGAGAGGCTACAACTGGTACTCCTGAAATTACTTCTA
CTACTGTTGATGGTGAAGATGAGTCGACGACTGAGGTCTCCACATCGACG
ACAACGGATAAGCCAGAGGAGTCGACAACCGAAGAGCCCGAAGAGGATTC
CACAACAAACGGAAAGCCCGAAGAATCCTCTACTACAACCGAACAGCCCG
AAGACTCGACTACTACAACCGAAGAACCAATAGATTCGACTACGGAAGCC
CCAGAAGACGAAAGTACGACCTCTTCTCCAACAGACGGAGGAGAGCAATC
AACGACTGAAGAGCCGGAAACGACCACAGAGAAGCCCGAAGAGACCTCTA
CATCACCAATTGATACTGAGGATTCAACAACTAAGGAGCCTGAAGATGTT
TCTACTACCCCCAAGGAATCCGAGGAGTCCACCACTTCAAGTCCTGAAGA
TGATGATACTACGTCAGCACCTGGCGAAGATGATGATACTACCGCAGCTC
CAGGAGGTGACGAAGAGGAAACAACCACCGAGGACCCCGAAGAGACCACT
ACATCACCCAGTGATGCTGATGATTCAACAACCGAGGAGCCCGAAGAAGA
TACTACAACGACCAAAAAGCCAGTAGAACCCTCAACTACAACCGAAGAAC
CTGAGGATTCGACTACTGAAGTTCCCGAGGAGTCTACAACAGAAGAACCC
GATAAGGAGACATCTACAACAAACGCAGAACCAGAAGTAACGACTACCGT
TGAACCGGATGTTGATAGTACTGTTGATCCAGAAGGTGACCAATCGACAA
GGGAGGACCTCGAGGATGTATCCACAACCGCTGTGCCCACTAAGCTACCT
TCGACAACGGGTGTTCCTCCTGAAGTTCCCATTACCACTCTGGCTCCAGA
AGTTCCGTCAACATCACCACCACAAGATGGAAATACCAAGAACATCTTCA
TTTTTAACGTGTTTTTGGTGAATGTAAAGATAGAAAACAAAAGTTGAAAG
CTTTCTAGACCAT
BS09085.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:41:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6296-RA | 2031 | CG6296-PA | 1..2031 | 17..2047 | 10155 | 100 | Plus |
CG6296-RA | 2031 | CG6296-PA | 1350..1430 | 1567..1647 | 225 | 85.2 | Plus |
CG6296-RA | 2031 | CG6296-PA | 1551..1631 | 1366..1446 | 225 | 85.2 | Plus |
CG6296-RA | 2031 | CG6296-PA | 1159..1248 | 1628..1717 | 195 | 81.1 | Plus |
CG6296-RA | 2031 | CG6296-PA | 1612..1701 | 1175..1264 | 195 | 81.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:41:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6296-RA | 2127 | CG6296-RA | 13..2044 | 17..2048 | 10160 | 100 | Plus |
CG6296-RA | 2127 | CG6296-RA | 1362..1442 | 1567..1647 | 225 | 85.2 | Plus |
CG6296-RA | 2127 | CG6296-RA | 1563..1643 | 1366..1446 | 225 | 85.2 | Plus |
CG6296-RA | 2127 | CG6296-RA | 1171..1260 | 1628..1717 | 195 | 81.1 | Plus |
CG6296-RA | 2127 | CG6296-RA | 1624..1713 | 1175..1264 | 195 | 81.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:41:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27003319..27005036 | 2048..331 | 8590 | 100 | Minus |
3R | 32079331 | 3R | 27005087..27005364 | 333..56 | 1390 | 100 | Minus |
3R | 32079331 | 3R | 27003720..27003800 | 1446..1366 | 225 | 85.2 | Minus |
3R | 32079331 | 3R | 27003921..27004001 | 1647..1567 | 225 | 85.2 | Minus |
3R | 32079331 | 3R | 27005418..27005457 | 56..17 | 200 | 100 | Minus |
3R | 32079331 | 3R | 27003650..27003739 | 1264..1175 | 195 | 81.1 | Minus |
3R | 32079331 | 3R | 27004103..27004192 | 1717..1628 | 195 | 81.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:41:08 has no hits.
BS09085.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:00 Download gff for
BS09085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6296-RA | 1..2031 | 17..2047 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:37:05 Download gff for
BS09085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6296-RA | 13..2027 | 17..2031 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:25 Download gff for
BS09085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6296-RA | 13..2027 | 17..2031 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:10:00 Download gff for
BS09085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6296-RA | 2..2044 | 8..2048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:58:12 Download gff for
BS09085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6296-RA | 13..2027 | 17..2031 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:58:12 Download gff for
BS09085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27003336..27005033 | 334..2031 | 100 | <- | Minus |
3R | 27005087..27005363 | 57..333 | 100 | <- | Minus |
3R | 27005418..27005457 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:25 Download gff for
BS09085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22829058..22830755 | 334..2031 | 100 | <- | Minus |
arm_3R | 22830809..22831085 | 57..333 | 100 | <- | Minus |
arm_3R | 22831140..22831179 | 17..56 | 100 | | Minus |
BS09085.pep Sequence
Translation from 16 to 2046
> BS09085.pep
MRLCLLVLGCVIAASAWPVDQLSVRDHGINGWFVPQREGGLRWIGKAEAE
RQLEYYEAQEALEGRLSTNTVNFYLYTLQNPSTGQQIKATQDSIDGSFFN
PQNPTRITIHGWNSNYKDGVNTRVADAWFQYGDYNMIAVDWLRGRSLEYA
SSVAGAPGAGKKVAALVDFLVEGYGMSLDTLEIVGFSLGAHVAGHTAKQV
NSGKVGKVVGLDPASPLISYSNTEKRLSSDDALYVESIQTNGAILGFGQP
IGKASFYMNGGRSQPGCGIDITGSCSHTKAVLYYVEALLWNNFPSIKCES
SVDANKNNCGNTYSSVFMGASINFFVAEGIFYVPVNKESPYGLGELNSGG
EATTGTPEITSTTVDGEDESTTEVSTSTTTDKPEESTTEEPEEDSTTNGK
PEESSTTTEQPEDSTTTTEEPIDSTTEAPEDESTTSSPTDGGEQSTTEEP
ETTTEKPEETSTSPIDTEDSTTKEPEDVSTTPKESEESTTSSPEDDDTTS
APGEDDDTTAAPGGDEEETTTEDPEETTTSPSDADDSTTEEPEEDTTTTK
KPVEPSTTTEEPEDSTTEVPEESTTEEPDKETSTTNAEPEVTTTVEPDVD
STVDPEGDQSTREDLEDVSTTAVPTKLPSTTGVPPEVPITTLAPEVPSTS
PPQDGNTKNIFIFNVFLVNVKIENKS*
BS09085.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:26:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6296-PA | 676 | CG6296-PA | 1..676 | 1..676 | 3531 | 100 | Plus |
CG6295-PA | 338 | CG6295-PA | 2..337 | 1..344 | 957 | 51.5 | Plus |
CG6283-PA | 339 | CG6283-PA | 1..336 | 1..342 | 953 | 52.3 | Plus |
CG17192-PA | 337 | CG17192-PA | 1..337 | 1..345 | 901 | 48.7 | Plus |
CG6277-PA | 341 | CG6277-PA | 1..339 | 1..343 | 899 | 50 | Plus |