Clone BS09087 Report

Search the DGRC for BS09087

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:90
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG10479-RA
Protein status:BS09087.pep: full length peptide match
Sequenced Size:1169

Clone Sequence Records

BS09087.3prime Sequence

948 bp (874 high quality bases) assembled on 2006-01-24

> BS09087.3prime
ATGGTCTAGAAAGCTTCTATATCTCAATGCTTTTCGCCTGCAGACTCCTC
AGGATGCCGAGTAGCTGCAGGGACTCCAGCGGCTCGAAGTCATCTGCATA
GCGCACTGATGAGGGCTTCACCACATGACGCTCCCTGGGCATATCCAATA
CCAATGGCAGTTGTTCGGCCATCACGGAGTGGTGGGTGATCAGCGCTTTC
AGGCTGGTGAACTGTTTCTTGGCTCCCTTCAGGCGGTACATCTGGTTCCG
GGTGGACTGCACGGGATAGGTCTTGACCTTGTTGTTCCTCTCGAGTCGCA
GGACCAGTTCGAAATGTCGCGGCGTACTGCGTCGCAGAAGAAAGCTTCCA
GGTGTGGCCTGCTGCAGGTGCTCCAAAGCTGCCTTGGCCGTGATCCTGGG
CTGATACCAGGGACACGCCAGGAGCTCCGGCTCCTCGTCCTCATCATCGT
CGGAGTTCTGGTTGGCGCTGATGTATCTGGTGAATAGAGGTGCAGCTCGA
CGGCGTTTGCTCATGGTGTTGGGGGAATTCTCAGCTAAGAGTTGACAGCA
ATCGGAGATTCCAGCGTCGGAGTCCTCTTCTGCCTCCTCATCCTGCTCCT
CTTCGGGATTGGAGTCACTGCTTGGCTGACTGCTCTGCCAGCAGTTGAGG
GACAGCAGGGACTTTTGGGGTGATCGTTTCGGCGTGGTTGGGCTGCTGCT
GCTGGTGCTGCTACTGCCGGTGGAGCTGCAGCTGCAGTCCGCATCGCGTT
CCTCCTCCTCTTCTTCCGCGTCGGCGTGGTACGAGGAGTCGAGAAGGTCC
TCATCATAGTCGCTTGTGGGTTCTTCGTTTAAGATCTGCTCTTTATGCGA
GGGTTGCGCGAAGAGTTTGCGCTGCAGAAAACTCTTCATGCTGTCGTAGA
CCTTGTGCGTGCGACTCTGGATCGGGTCCTGTTTTCCATTTTCTCCGG

BS09087.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10479-PA 1137 CG10479-RA 220..1137 934..17 4565 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10479-RA 1673 CG10479-RA 476..1409 948..15 4610 99.7 Minus
CG10479-RB 1676 CG10479-RB 476..1412 948..15 4570 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5967809..5968595 15..801 3935 100 Plus
3L 28110227 3L 5968813..5968962 799..948 675 96.7 Plus
Blast to na_te.dros performed on 2015-02-06 10:09:52 has no hits.

BS09087.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:58:55 Download gff for BS09087.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10479-PA 206..1137 17..948 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:05:06 Download gff for BS09087.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10479-PA 206..1137 17..948 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:25:07 Download gff for BS09087.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10479-RA 476..1409 15..948 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:35:35 Download gff for BS09087.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10479-RA 476..1409 15..948 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:35:35 Download gff for BS09087.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5967809..5968593 15..799 100 <- Plus
3L 5968814..5968962 800..948 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:25:07 Download gff for BS09087.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5960909..5961693 15..799 100 <- Plus
arm_3L 5961914..5962062 800..948 98   Plus

BS09087.5prime Sequence

932 bp (790 high quality bases) assembled on 2006-01-24

> BS09087.5prime
GAAGTTATCTGTCGACATGGGTCGCCTGTTCCAATACAATCGCTTTGGCG
CCACGGATGGCATCAACAAAAACACCAGCAAAAAGGATACTCAGCAAAAG
AACAAAATGCTACGCAATGCCATCAAATGTCCTGGCTACTCGGACATCTA
TGGTCAGTACAATAAGGACTCGTCCTTCGAGAAGTGCGATGAATGGAGCA
ACAAGCTGCAATTCCCAGCCGCCGGAGAAATGGATAAACAGGAACCGATC
CAGAGTCGCACGCACAAGGTCTACGACAGCATGAAGAGTTTTCTGCAGCG
CAAACTCTTCGCGCAACCCTCGCATAAAGAGCAGATCTTAAACGAAGAAC
CCACAAGCGACTATGATGAGGACCTTCTCGACTCCTCGTACCACGCCGAC
GCGGAAGAAGAGGAGGAGGAACGCGATGCGGACTGCAGCTGCAGCTCCAC
CGGCAGTAGCAGCACCAGCAGCAGCAGCCCAACCACGCCGAAACGATCAC
CCCAAAAGTCCCTGCTGTCCCTCAACTGCTGGCAGAGCAGTCAGCCAAGC
AGTGACTCCAATCCCGAAGAGGAGCAGGATGAGGAGGCAGAAGAGGACTC
CGACGCTGGAATCTCCGATTGCTGTCAACTCTTAGCTGAGAATTCCCCCA
ACACCATGAGCAAACGCCGTCGAGCTGCACCTCTATTCACCAGATACATC
AGCGCCAACCAGAACTCCGACGATGATGAGGACGAGGAGCCGGAGCTCCT
GGCGTGTCCCTGGTATCAGCCCAGGATCACGGCCAANGCAGCTTTGGAGC
ACCTGCAGCAGGCCACACCTGGAAGCTTTCTTCTGCGACGCAGTACGCCG
CGACATTTCGAACTGGTCCTGCGAATCGAGAGGACAACAAGGTCAAGAAC
TATCCCGTGCAGTCCACCCGGAACCAGATGTA

BS09087.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG10479-PA 1137 CG10479-RA 1..868 17..884 4296 99.7 Plus
CG10479-PA 1137 CG10479-RA 869..917 884..932 220 97.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG10479-RA 1673 CG10479-RA 271..1187 17..932 4519 99.6 Plus
CG10479-RB 1676 CG10479-RB 271..1190 17..932 4479 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:59:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5968031..5968595 932..369 2734 99.3 Minus
3L 28110227 3L 5968813..5969075 371..109 1315 100 Minus
3L 28110227 3L 5975645..5975737 109..17 465 100 Minus
Blast to na_te.dros performed on 2015-02-13 08:59:03 has no hits.

BS09087.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:58:56 Download gff for BS09087.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10479-PA 1..916 17..931 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:05:07 Download gff for BS09087.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10479-PA 1..916 17..931 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:44:02 Download gff for BS09087.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10479-RA 271..1186 17..931 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:31:53 Download gff for BS09087.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10479-RA 271..1186 17..931 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:31:53 Download gff for BS09087.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5968814..5969074 110..370 100 <- Minus
3L 5975645..5975737 17..109 100   Minus
3L 5968032..5968593 371..931 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:44:02 Download gff for BS09087.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5961132..5961693 371..931 99 <- Minus
arm_3L 5961914..5962174 110..370 100 <- Minus
arm_3L 5968745..5968837 17..109 100   Minus

BS09087.complete Sequence

1169 bp assembled on 2008-08-15

GenBank Submission: FJ638820

> BS09087.complete
GAAGTTATCTGTCGACATGGGTCGCCTGTTCCAATACAATCGCTTTGGCG
CCACGGATGGCATCAACAAAAACACCAGCAAAAAGGATACTCAGCAAAAG
AACAAAATGCTACGCAATGCCATCAAATGTCCTGGCTACTCGGACATCTA
TGGTCAGTACAATAAGGACTCGTCCTTCGAGAAGTGCGATGAATGGAGCA
ACAAGCTGCAATTCCCAGCCGCCGGAGAAATGGATAAACAGGAACCGATC
CAGAGTCGCACGCACAAGGTCTACGACAGCATGAAGAGTTTTCTGCAGCG
CAAACTCTTCGCGCAACCCTCGCATAAAGAGCAGATCTTAAACGAAGAAC
CCACAAGCGACTATGATGAGGACCTTCTCGACTCCTCGTACCACGCCGAC
GCGGAAGAAGAGGAGGAGGAACGCGATGCGGACTGCAGCTGCAGCTCCAC
CGGCAGTAGCAGCACCAGCAGCAGCAGCCCAACCACGCCGAAACGATCAC
CCCAAAAGTCCCTGCTGTCCCTCAACTGCTGGCAGAGCAGTCAGCCAAGC
AGTGACTCCAATCCCGAAGAGGAGCAGGATGAGGAGGCAGAAGAGGACTC
CGACGCTGGAATCTCCGATTGCTGTCAACTCTTAGCTGAGAATTCCCCCA
ACACCATGAGCAAACGCCGTCGAGCTGCACCTCTATTCACCAGATACATC
AGCGCCAACCAGAACTCCGACGATGATGAGGACGAGGAGCCGGAGCTCCT
GGCGTGTCCCTGGTATCAGCCCAGGATCACGGCCAAGGCAGCTTTGGAGC
ACCTGCAGCAGGCCACACCTGGAAGCTTTCTTCTGCGACGCAGTACGCCG
CGACATTTCGAACTGGTCCTGCGACTCGAGAGGAACAACAAGGTCAAGAC
CTATCCCGTGCAGTCCACCCGGAACCAGATGTACCGCCTGAAGGGAGCCA
AGAAACAGTTCACCAGCCTGAAAGCGCTGATCACCCACCACTCCGTGATG
GCCGAACAACTGCCATTGGTATTGGATATGCCCAGGGAGCGTCATGTGGT
GAAGCCCTCATCAGTGCGCTATGCAGATGACTTCGAGCCGCTGGAGTCCC
TGCAGCTACTCGGCATCCTGAGGAGTCTGCAGGCGAAAAGCATTGAGATA
TAGAAGCTTTCTAGACCAT

BS09087.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG10479-RA 1137 CG10479-PA 1..1137 17..1153 5685 100 Plus
CG10479-RB 1140 CG10479-PB 1..1140 17..1153 5620 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:45:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG10479-RA 1673 CG10479-RA 271..1409 17..1155 5695 100 Plus
CG10479-RB 1676 CG10479-RB 271..1412 17..1155 5630 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5967809..5968595 1155..369 3935 100 Minus
3L 28110227 3L 5968813..5969075 371..109 1315 100 Minus
3L 28110227 3L 5975645..5975737 109..17 465 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:45:57 has no hits.

BS09087.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:54:52 Download gff for BS09087.complete
Subject Subject Range Query Range Percent Splice Strand
CG10479-RA 269..1407 17..1155 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:55 Download gff for BS09087.complete
Subject Subject Range Query Range Percent Splice Strand
CG10479-RA 271..1407 17..1153 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:12:00 Download gff for BS09087.complete
Subject Subject Range Query Range Percent Splice Strand
CG10479-RA 269..1405 17..1153 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:16:02 Download gff for BS09087.complete
Subject Subject Range Query Range Percent Splice Strand
CG10479-RA 271..1407 17..1153 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:16:02 Download gff for BS09087.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5967811..5968593 371..1153 100 <- Minus
3L 5968814..5969074 110..370 100 <- Minus
3L 5975645..5975737 17..109 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:55 Download gff for BS09087.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5960911..5961693 371..1153 100 <- Minus
arm_3L 5961914..5962174 110..370 100 <- Minus
arm_3L 5968745..5968837 17..109 100   Minus

BS09087.pep Sequence

Translation from 16 to 1152

> BS09087.pep
MGRLFQYNRFGATDGINKNTSKKDTQQKNKMLRNAIKCPGYSDIYGQYNK
DSSFEKCDEWSNKLQFPAAGEMDKQEPIQSRTHKVYDSMKSFLQRKLFAQ
PSHKEQILNEEPTSDYDEDLLDSSYHADAEEEEEERDADCSCSSTGSSST
SSSSPTTPKRSPQKSLLSLNCWQSSQPSSDSNPEEEQDEEAEEDSDAGIS
DCCQLLAENSPNTMSKRRRAAPLFTRYISANQNSDDDEDEEPELLACPWY
QPRITAKAALEHLQQATPGSFLLRRSTPRHFELVLRLERNNKVKTYPVQS
TRNQMYRLKGAKKQFTSLKALITHHSVMAEQLPLVLDMPRERHVVKPSSV
RYADDFEPLESLQLLGILRSLQAKSIEI*

BS09087.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG10479-PA 378 CG10479-PA 1..378 1..378 1971 100 Plus
CG10479-PB 379 CG10479-PB 1..379 1..378 1959 99.7 Plus
PVRAP-PA 474 CG32406-PA 331..469 238..377 241 44.1 Plus
CG33993-PB 258 CG33993-PB 114..216 240..340 189 44.2 Plus
CG33993-PA 421 CG33993-PA 277..379 240..340 189 44.2 Plus