Clone Sequence Records
BS09087.3prime Sequence
948 bp (874 high quality bases) assembled on 2006-01-24
> BS09087.3prime
ATGGTCTAGAAAGCTTCTATATCTCAATGCTTTTCGCCTGCAGACTCCTC
AGGATGCCGAGTAGCTGCAGGGACTCCAGCGGCTCGAAGTCATCTGCATA
GCGCACTGATGAGGGCTTCACCACATGACGCTCCCTGGGCATATCCAATA
CCAATGGCAGTTGTTCGGCCATCACGGAGTGGTGGGTGATCAGCGCTTTC
AGGCTGGTGAACTGTTTCTTGGCTCCCTTCAGGCGGTACATCTGGTTCCG
GGTGGACTGCACGGGATAGGTCTTGACCTTGTTGTTCCTCTCGAGTCGCA
GGACCAGTTCGAAATGTCGCGGCGTACTGCGTCGCAGAAGAAAGCTTCCA
GGTGTGGCCTGCTGCAGGTGCTCCAAAGCTGCCTTGGCCGTGATCCTGGG
CTGATACCAGGGACACGCCAGGAGCTCCGGCTCCTCGTCCTCATCATCGT
CGGAGTTCTGGTTGGCGCTGATGTATCTGGTGAATAGAGGTGCAGCTCGA
CGGCGTTTGCTCATGGTGTTGGGGGAATTCTCAGCTAAGAGTTGACAGCA
ATCGGAGATTCCAGCGTCGGAGTCCTCTTCTGCCTCCTCATCCTGCTCCT
CTTCGGGATTGGAGTCACTGCTTGGCTGACTGCTCTGCCAGCAGTTGAGG
GACAGCAGGGACTTTTGGGGTGATCGTTTCGGCGTGGTTGGGCTGCTGCT
GCTGGTGCTGCTACTGCCGGTGGAGCTGCAGCTGCAGTCCGCATCGCGTT
CCTCCTCCTCTTCTTCCGCGTCGGCGTGGTACGAGGAGTCGAGAAGGTCC
TCATCATAGTCGCTTGTGGGTTCTTCGTTTAAGATCTGCTCTTTATGCGA
GGGTTGCGCGAAGAGTTTGCGCTGCAGAAAACTCTTCATGCTGTCGTAGA
CCTTGTGCGTGCGACTCTGGATCGGGTCCTGTTTTCCATTTTCTCCGG
BS09087.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10479-PA | 1137 | CG10479-RA | 220..1137 | 934..17 | 4565 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:09:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10479-RA | 1673 | CG10479-RA | 476..1409 | 948..15 | 4610 | 99.7 | Minus |
CG10479-RB | 1676 | CG10479-RB | 476..1412 | 948..15 | 4570 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:09:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5967809..5968595 | 15..801 | 3935 | 100 | Plus |
3L | 28110227 | 3L | 5968813..5968962 | 799..948 | 675 | 96.7 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:09:52 has no hits.
BS09087.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:58:55 Download gff for
BS09087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10479-PA | 206..1137 | 17..948 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:05:06 Download gff for
BS09087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10479-PA | 206..1137 | 17..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:25:07 Download gff for
BS09087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10479-RA | 476..1409 | 15..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:35:35 Download gff for
BS09087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10479-RA | 476..1409 | 15..948 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:35:35 Download gff for
BS09087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5967809..5968593 | 15..799 | 100 | <- | Plus |
3L | 5968814..5968962 | 800..948 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:25:07 Download gff for
BS09087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5960909..5961693 | 15..799 | 100 | <- | Plus |
arm_3L | 5961914..5962062 | 800..948 | 98 | | Plus |
BS09087.5prime Sequence
932 bp (790 high quality bases) assembled on 2006-01-24
> BS09087.5prime
GAAGTTATCTGTCGACATGGGTCGCCTGTTCCAATACAATCGCTTTGGCG
CCACGGATGGCATCAACAAAAACACCAGCAAAAAGGATACTCAGCAAAAG
AACAAAATGCTACGCAATGCCATCAAATGTCCTGGCTACTCGGACATCTA
TGGTCAGTACAATAAGGACTCGTCCTTCGAGAAGTGCGATGAATGGAGCA
ACAAGCTGCAATTCCCAGCCGCCGGAGAAATGGATAAACAGGAACCGATC
CAGAGTCGCACGCACAAGGTCTACGACAGCATGAAGAGTTTTCTGCAGCG
CAAACTCTTCGCGCAACCCTCGCATAAAGAGCAGATCTTAAACGAAGAAC
CCACAAGCGACTATGATGAGGACCTTCTCGACTCCTCGTACCACGCCGAC
GCGGAAGAAGAGGAGGAGGAACGCGATGCGGACTGCAGCTGCAGCTCCAC
CGGCAGTAGCAGCACCAGCAGCAGCAGCCCAACCACGCCGAAACGATCAC
CCCAAAAGTCCCTGCTGTCCCTCAACTGCTGGCAGAGCAGTCAGCCAAGC
AGTGACTCCAATCCCGAAGAGGAGCAGGATGAGGAGGCAGAAGAGGACTC
CGACGCTGGAATCTCCGATTGCTGTCAACTCTTAGCTGAGAATTCCCCCA
ACACCATGAGCAAACGCCGTCGAGCTGCACCTCTATTCACCAGATACATC
AGCGCCAACCAGAACTCCGACGATGATGAGGACGAGGAGCCGGAGCTCCT
GGCGTGTCCCTGGTATCAGCCCAGGATCACGGCCAANGCAGCTTTGGAGC
ACCTGCAGCAGGCCACACCTGGAAGCTTTCTTCTGCGACGCAGTACGCCG
CGACATTTCGAACTGGTCCTGCGAATCGAGAGGACAACAAGGTCAAGAAC
TATCCCGTGCAGTCCACCCGGAACCAGATGTA
BS09087.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10479-PA | 1137 | CG10479-RA | 1..868 | 17..884 | 4296 | 99.7 | Plus |
CG10479-PA | 1137 | CG10479-RA | 869..917 | 884..932 | 220 | 97.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:59:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10479-RA | 1673 | CG10479-RA | 271..1187 | 17..932 | 4519 | 99.6 | Plus |
CG10479-RB | 1676 | CG10479-RB | 271..1190 | 17..932 | 4479 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:59:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5968031..5968595 | 932..369 | 2734 | 99.3 | Minus |
3L | 28110227 | 3L | 5968813..5969075 | 371..109 | 1315 | 100 | Minus |
3L | 28110227 | 3L | 5975645..5975737 | 109..17 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:59:03 has no hits.
BS09087.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:58:56 Download gff for
BS09087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10479-PA | 1..916 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:05:07 Download gff for
BS09087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10479-PA | 1..916 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:44:02 Download gff for
BS09087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10479-RA | 271..1186 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:31:53 Download gff for
BS09087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10479-RA | 271..1186 | 17..931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:31:53 Download gff for
BS09087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5968814..5969074 | 110..370 | 100 | <- | Minus |
3L | 5975645..5975737 | 17..109 | 100 | | Minus |
3L | 5968032..5968593 | 371..931 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:44:02 Download gff for
BS09087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5961132..5961693 | 371..931 | 99 | <- | Minus |
arm_3L | 5961914..5962174 | 110..370 | 100 | <- | Minus |
arm_3L | 5968745..5968837 | 17..109 | 100 | | Minus |
BS09087.complete Sequence
1169 bp assembled on 2008-08-15
GenBank Submission: FJ638820
> BS09087.complete
GAAGTTATCTGTCGACATGGGTCGCCTGTTCCAATACAATCGCTTTGGCG
CCACGGATGGCATCAACAAAAACACCAGCAAAAAGGATACTCAGCAAAAG
AACAAAATGCTACGCAATGCCATCAAATGTCCTGGCTACTCGGACATCTA
TGGTCAGTACAATAAGGACTCGTCCTTCGAGAAGTGCGATGAATGGAGCA
ACAAGCTGCAATTCCCAGCCGCCGGAGAAATGGATAAACAGGAACCGATC
CAGAGTCGCACGCACAAGGTCTACGACAGCATGAAGAGTTTTCTGCAGCG
CAAACTCTTCGCGCAACCCTCGCATAAAGAGCAGATCTTAAACGAAGAAC
CCACAAGCGACTATGATGAGGACCTTCTCGACTCCTCGTACCACGCCGAC
GCGGAAGAAGAGGAGGAGGAACGCGATGCGGACTGCAGCTGCAGCTCCAC
CGGCAGTAGCAGCACCAGCAGCAGCAGCCCAACCACGCCGAAACGATCAC
CCCAAAAGTCCCTGCTGTCCCTCAACTGCTGGCAGAGCAGTCAGCCAAGC
AGTGACTCCAATCCCGAAGAGGAGCAGGATGAGGAGGCAGAAGAGGACTC
CGACGCTGGAATCTCCGATTGCTGTCAACTCTTAGCTGAGAATTCCCCCA
ACACCATGAGCAAACGCCGTCGAGCTGCACCTCTATTCACCAGATACATC
AGCGCCAACCAGAACTCCGACGATGATGAGGACGAGGAGCCGGAGCTCCT
GGCGTGTCCCTGGTATCAGCCCAGGATCACGGCCAAGGCAGCTTTGGAGC
ACCTGCAGCAGGCCACACCTGGAAGCTTTCTTCTGCGACGCAGTACGCCG
CGACATTTCGAACTGGTCCTGCGACTCGAGAGGAACAACAAGGTCAAGAC
CTATCCCGTGCAGTCCACCCGGAACCAGATGTACCGCCTGAAGGGAGCCA
AGAAACAGTTCACCAGCCTGAAAGCGCTGATCACCCACCACTCCGTGATG
GCCGAACAACTGCCATTGGTATTGGATATGCCCAGGGAGCGTCATGTGGT
GAAGCCCTCATCAGTGCGCTATGCAGATGACTTCGAGCCGCTGGAGTCCC
TGCAGCTACTCGGCATCCTGAGGAGTCTGCAGGCGAAAAGCATTGAGATA
TAGAAGCTTTCTAGACCAT
BS09087.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:45:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10479-RA | 1137 | CG10479-PA | 1..1137 | 17..1153 | 5685 | 100 | Plus |
CG10479-RB | 1140 | CG10479-PB | 1..1140 | 17..1153 | 5620 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:45:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10479-RA | 1673 | CG10479-RA | 271..1409 | 17..1155 | 5695 | 100 | Plus |
CG10479-RB | 1676 | CG10479-RB | 271..1412 | 17..1155 | 5630 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:45:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5967809..5968595 | 1155..369 | 3935 | 100 | Minus |
3L | 28110227 | 3L | 5968813..5969075 | 371..109 | 1315 | 100 | Minus |
3L | 28110227 | 3L | 5975645..5975737 | 109..17 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:45:57 has no hits.
BS09087.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:54:52 Download gff for
BS09087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10479-RA | 269..1407 | 17..1155 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:55 Download gff for
BS09087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10479-RA | 271..1407 | 17..1153 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:12:00 Download gff for
BS09087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10479-RA | 269..1405 | 17..1153 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:16:02 Download gff for
BS09087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10479-RA | 271..1407 | 17..1153 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:16:02 Download gff for
BS09087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5967811..5968593 | 371..1153 | 100 | <- | Minus |
3L | 5968814..5969074 | 110..370 | 100 | <- | Minus |
3L | 5975645..5975737 | 17..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:55 Download gff for
BS09087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5960911..5961693 | 371..1153 | 100 | <- | Minus |
arm_3L | 5961914..5962174 | 110..370 | 100 | <- | Minus |
arm_3L | 5968745..5968837 | 17..109 | 100 | | Minus |
BS09087.pep Sequence
Translation from 16 to 1152
> BS09087.pep
MGRLFQYNRFGATDGINKNTSKKDTQQKNKMLRNAIKCPGYSDIYGQYNK
DSSFEKCDEWSNKLQFPAAGEMDKQEPIQSRTHKVYDSMKSFLQRKLFAQ
PSHKEQILNEEPTSDYDEDLLDSSYHADAEEEEEERDADCSCSSTGSSST
SSSSPTTPKRSPQKSLLSLNCWQSSQPSSDSNPEEEQDEEAEEDSDAGIS
DCCQLLAENSPNTMSKRRRAAPLFTRYISANQNSDDDEDEEPELLACPWY
QPRITAKAALEHLQQATPGSFLLRRSTPRHFELVLRLERNNKVKTYPVQS
TRNQMYRLKGAKKQFTSLKALITHHSVMAEQLPLVLDMPRERHVVKPSSV
RYADDFEPLESLQLLGILRSLQAKSIEI*
BS09087.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:49:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10479-PA | 378 | CG10479-PA | 1..378 | 1..378 | 1971 | 100 | Plus |
CG10479-PB | 379 | CG10479-PB | 1..379 | 1..378 | 1959 | 99.7 | Plus |
PVRAP-PA | 474 | CG32406-PA | 331..469 | 238..377 | 241 | 44.1 | Plus |
CG33993-PB | 258 | CG33993-PB | 114..216 | 240..340 | 189 | 44.2 | Plus |
CG33993-PA | 421 | CG33993-PA | 277..379 | 240..340 | 189 | 44.2 | Plus |