Clone Sequence Records
BS09094.3prime Sequence
860 bp (843 high quality bases) assembled on 2006-01-24
> BS09094.3prime
ATGGTCTAGAAAGCTTTTACTTGGGACTGGTCGTGGACTTGCGCCGGGCA
TCCGTTATGGCACCCCACAGCTCGATGATGAAGTCATCCGTGAAGCCGAA
CGACTCTAGGTCCGAGTTGTCGATGGCCTCGGCGAAGTCCATTGAGTTGG
ACTTTTGGTCGCCCAAGTCCCAGATCTGGGACGCCAGCTCCGTGTCGTTG
ATGCCCATGAAGGACTCCAGCAGGTTATTAATGGCCTCGATACCGGCCAC
AGTCGCCTCATCGAACTGCGGCTCGATCTGGGCATTGCCATTGGCCTTGA
ACCGCAGCGTCTCCTTGCCGCTGCCATAGTTCTTTCCTCCGGCCGAGCCC
GACGCCCTTGACTGGCTGCGCGGTCCGATGCCCTGGAAGCCGCTTCGCAC
TGGCTCCACCAGGCGCAGGGTGAAGGTCTCCCCGGTGGCAATGTCCTTCA
GCATGCGCGCCACCTCGTAGTGCCGCTTGCCCACCATATTCTGGCCGTTG
AGCTTCTCGATGTGATCGCCAACGCTGATGTGCTCGATGCGATCGATGAT
CGAGTCCTCCTTGATCCGCTTTATGAAGGCGTAGCCGGCCCCGTTGTCGG
TGATCGTCAGTCCGAGGGCATCCTGCGACTTCACAATCTCGATCTCCTTG
GGCCGACCTTTGCGATGGGCGAATATAAAGTCGTCCAGCCCGATCTGCCC
GCCCAGCAGACGCGTCATGTCCACCTTGTGCGAGTTGAGGGTGCAGAAGA
GAATGTCCTTCTCGGATATGTCAAAGCACTCGGCAATCTTCTGGTACAGC
TCTCGAACGCTGGAGAAGTCGTGGATTAGACCGGTGGGACTGCCGTGGGC
CAGTTGGCAG
BS09094.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11546-PA | 1011 | l(2)02045-RA | 168..1011 | 860..17 | 4220 | 100 | Minus |
| CG11546-PB | 1011 | l(2)02045-RB | 168..1011 | 860..17 | 4220 | 100 | Minus |
| CG11546-PD | 1011 | l(2)02045-RD | 168..1011 | 860..17 | 4220 | 100 | Minus |
| CG11546-PC | 1011 | l(2)02045-RC | 168..1011 | 860..17 | 4220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:59:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kermit-RE | 1661 | CG11546-RE | 463..1306 | 860..17 | 4220 | 100 | Minus |
| kermit-RC | 1722 | CG11546-RC | 524..1367 | 860..17 | 4220 | 100 | Minus |
| kermit-RD | 1606 | CG11546-RD | 408..1251 | 860..17 | 4220 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:59:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8147273..8148116 | 17..860 | 4220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:59:07 has no hits.
BS09094.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:59:10 Download gff for
BS09094.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11546-PD | 168..1011 | 17..860 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:05:25 Download gff for
BS09094.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11546-PC | 168..1011 | 17..860 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:25:38 Download gff for
BS09094.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kermit-RD | 408..1251 | 17..860 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:40 Download gff for
BS09094.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kermit-RD | 408..1251 | 17..860 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:40 Download gff for
BS09094.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8147273..8148116 | 17..860 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:25:38 Download gff for
BS09094.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4034778..4035621 | 17..860 | 100 | | Plus |
BS09094.5prime Sequence
849 bp (847 high quality bases) assembled on 2006-01-24
> BS09094.5prime
GAAGTTATCAGTCGACATGCCGCTCTTCACAAGAAAATCACCCAAGCAAG
GACCCACCTCGGATGGGGGCTCCCAGTTCGGCAGTCGCTCCTCCATGAAC
TCCGGGTCCTCCCAGGGCAGCCACATTAGCAATAACAACAACAACAGCAT
TCCGGAGAAAACAAAGCCCCCGCTGGTCTTCCACTGCCAACTGGCCCACG
GCAGTCCCACCGGTCTAATCCACGACTTCTCCAGCGTTCGAGAGCTGTAC
CAGAAGATTGCCGAGTGCTTTGACATATCCGAGAAGGACATTCTCTTCTG
CACCCTCAACTCGCACAAGGTGGACATGACGCGTCTGCTGGGCGGGCAGA
TCGGGCTGGACGACTTTATATTCGCCCATCGCAAAGGTCGGCCCAAGGAG
ATCGAGATTGTGAAGTCGCAGGATGCCCTCGGACTGACGATCACCGACAA
CGGGGCCGGCTACGCCTTCATAAAGCGGATCAAGGAGGACTCGATCATCG
ATCGCATCGAGCACATCAGCGTTGGCGATCACATCGAGAAGCTCAACGGC
CAGAATATGGTGGGCAAGCGGCACTACGAGGTGGCGCGCATGCTGAAGGA
CATTGCCACCGGGGAGACCTTCACCCTGCGCCTGGTGGAGCCAGTGCGAA
GCGGCTTCCAGGGCATCGGACCGCGCAGCCAGTCAAGGGCGTCGGGCTCG
GCCGGAGGAAAGAACTATGGCAGCGGCAAGGAGACGCTGCGGTTCAAGGC
CAATGGCAATGCCCAGATCGAGCCGCAGTTCGATGAGGCGACTGTGGCCG
GTATCGAGGCCATTAATAACCTGCTGGAGTCCTTCATGGGCATCAACGA
BS09094.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11546-PA | 1011 | l(2)02045-RA | 1..833 | 17..849 | 4165 | 100 | Plus |
| CG11546-PB | 1011 | l(2)02045-RB | 1..833 | 17..849 | 4165 | 100 | Plus |
| CG11546-PD | 1011 | l(2)02045-RD | 1..833 | 17..849 | 4165 | 100 | Plus |
| CG11546-PC | 1011 | l(2)02045-RC | 1..833 | 17..849 | 4165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:20:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kermit-RE | 1661 | CG11546-RE | 295..1128 | 16..849 | 4170 | 100 | Plus |
| kermit-RC | 1722 | CG11546-RC | 356..1189 | 16..849 | 4170 | 100 | Plus |
| kermit-RD | 1606 | CG11546-RD | 240..1073 | 16..849 | 4170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:20:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8147451..8148284 | 849..16 | 4170 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:20:29 has no hits.
BS09094.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:59:11 Download gff for
BS09094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11546-PD | 1..832 | 17..848 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:05:27 Download gff for
BS09094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11546-PC | 1..832 | 17..848 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:12:52 Download gff for
BS09094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kermit-RD | 232..1072 | 9..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:20:02 Download gff for
BS09094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kermit-RD | 232..1072 | 9..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:20:02 Download gff for
BS09094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8147452..8148292 | 9..848 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:12:52 Download gff for
BS09094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4034957..4035797 | 9..848 | 99 | | Minus |
BS09094.complete Sequence
1043 bp (1043 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636350
> BS09094.complete
GAAGTTATCAGTCGACATGCCGCTCTTCACAAGAAAATCACCCAAGCAAG
GACCCACCTCGGATGGGGGCTCCCAGTTCGGCAGTCGCTCCTCCATGAAC
TCCGGGTCCTCCCAGGGCAGCCACATTAGCAATAACAACAACAACAGCAT
TCCGGAGAAAACAAAGCCCCCGCTGGTCTTCCACTGCCAACTGGCCCACG
GCAGTCCCACCGGTCTAATCCACGACTTCTCCAGCGTTCGAGAGCTGTAC
CAGAAGATTGCCGAGTGCTTTGACATATCCGAGAAGGACATTCTCTTCTG
CACCCTCAACTCGCACAAGGTGGACATGACGCGTCTGCTGGGCGGGCAGA
TCGGGCTGGACGACTTTATATTCGCCCATCGCAAAGGTCGGCCCAAGGAG
ATCGAGATTGTGAAGTCGCAGGATGCCCTCGGACTGACGATCACCGACAA
CGGGGCCGGCTACGCCTTCATAAAGCGGATCAAGGAGGACTCGATCATCG
ATCGCATCGAGCACATCAGCGTTGGCGATCACATCGAGAAGCTCAACGGC
CAGAATATGGTGGGCAAGCGGCACTACGAGGTGGCGCGCATGCTGAAGGA
CATTGCCACCGGGGAGACCTTCACCCTGCGCCTGGTGGAGCCAGTGCGAA
GCGGCTTCCAGGGCATCGGACCGCGCAGCCAGTCAAGGGCGTCGGGCTCG
GCCGGAGGAAAGAACTATGGCAGCGGCAAGGAGACGCTGCGGTTCAAGGC
CAATGGCAATGCCCAGATCGAGCCGCAGTTCGATGAGGCGACTGTGGCCG
GTATCGAGGCCATTAATAACCTGCTGGAGTCCTTCATGGGCATCAACGAC
ACGGAGCTGGCGTCCCAGATCTGGGACTTGGGCGACCAAAAGTCCAACTC
AATGGACTTCGCCGAGGCCATCGACAACTCGGACCTAGAGTCGTTCGGCT
TCACGGATGACTTCATCATCGAGCTGTGGGGTGCCATAACGGATGCCCGG
CGCAAGTCCACGACCAGTCCCAAGTAAAAGCTTTCTAGACCAT
BS09094.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:35:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kermit-RE | 1011 | CG11546-PE | 1..1011 | 17..1027 | 5055 | 100 | Plus |
| kermit-RC | 1011 | CG11546-PC | 1..1011 | 17..1027 | 5055 | 100 | Plus |
| kermit-RD | 1011 | CG11546-PD | 1..1011 | 17..1027 | 5055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:35:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kermit-RE | 1661 | CG11546-RE | 295..1306 | 16..1027 | 5060 | 100 | Plus |
| kermit-RC | 1722 | CG11546-RC | 356..1367 | 16..1027 | 5060 | 100 | Plus |
| kermit-RD | 1606 | CG11546-RD | 240..1251 | 16..1027 | 5060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:35:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8147273..8148284 | 1027..16 | 5060 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:35:50 has no hits.
BS09094.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:09 Download gff for
BS09094.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kermit-RD | 1..1011 | 17..1027 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:50 Download gff for
BS09094.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kermit-RD | 198..1217 | 9..1027 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:20 Download gff for
BS09094.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kermit-RD | 241..1249 | 17..1025 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:09 Download gff for
BS09094.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kermit-RD | 198..1217 | 9..1027 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:12 Download gff for
BS09094.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kermit-RD | 241..1249 | 17..1025 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:12 Download gff for
BS09094.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8147275..8148283 | 17..1025 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:20 Download gff for
BS09094.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4034780..4035788 | 17..1025 | 100 | | Minus |
BS09094.pep Sequence
Translation from 16 to 1026
> BS09094.pep
MPLFTRKSPKQGPTSDGGSQFGSRSSMNSGSSQGSHISNNNNNSIPEKTK
PPLVFHCQLAHGSPTGLIHDFSSVRELYQKIAECFDISEKDILFCTLNSH
KVDMTRLLGGQIGLDDFIFAHRKGRPKEIEIVKSQDALGLTITDNGAGYA
FIKRIKEDSIIDRIEHISVGDHIEKLNGQNMVGKRHYEVARMLKDIATGE
TFTLRLVEPVRSGFQGIGPRSQSRASGSAGGKNYGSGKETLRFKANGNAQ
IEPQFDEATVAGIEAINNLLESFMGINDTELASQIWDLGDQKSNSMDFAE
AIDNSDLESFGFTDDFIIELWGAITDARRKSTTSPK*
BS09094.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:43:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kermit-PE | 336 | CG11546-PE | 1..336 | 1..336 | 1739 | 100 | Plus |
| kermit-PC | 336 | CG11546-PC | 1..336 | 1..336 | 1739 | 100 | Plus |
| kermit-PD | 336 | CG11546-PD | 1..336 | 1..336 | 1739 | 100 | Plus |
| kermit-PB | 336 | CG11546-PB | 1..336 | 1..336 | 1739 | 100 | Plus |
| kermit-PA | 336 | CG11546-PA | 1..336 | 1..336 | 1739 | 100 | Plus |
