Clone Sequence Records
BS09096.3prime Sequence
895 bp (871 high quality bases) assembled on 2006-01-24
> BS09096.3prime
ATGGTCTAGAAAGCTTTTAGATCACATCCGCTGGCCGGCTGTTCGGAGCA
GCCGCATTCTCAGTACCCAAATCCACGTAACGAGCACGATACCAGCGGGC
CACTGCAGCTCGATACCAGTCGAGGAATAGGGCCTGTCGGTAGAGGATGA
TACCCATTTGCAGGATGAGGAAGCCCATGATCGTGACCAGATTCATGTAC
TCCCACTCCATGATAATCACAAACACCCAGATGAAGTAAACGCGTAGGCC
ATCGGCCAGAAGCCGGTTGGCGCTGGACGAGTACATCGCAATGTACAGTC
CAATGAAGTTGTACATGGCACATGAGATGGTGAAGGCAATCAGAGTCATA
ATCAATGAGATACTCCCCTGCAGAGCCGCAAAGAGATCACCCCAATCGTC
GAAAACTGCACGCGAACTACAGCTAAATGGATCAATGCTCGGCAGGAAGT
TCATGCAAATGGCCAGCATCGAGGTGATGCCCAAGCCGAAGATTCCCTGC
CAGCCAGCAGCTTGCAGTGGAGCAACATTCGAGGTTTTTAGCTGTTTCTC
CTCGCAAACATATTGCAGTCCGTGCAGAATTTCAGCAATGATGATGAGTA
AGTCGCCGGTCAGAATGGATTTGTAGTCCGTGTAAGGCAACGTGACCAGG
TCGTATTCAACGCGATGGACGTCCAGACTGATAATGTCCAGCAGGCCGCA
CGATATCGTAAAGATGGCCAGCCAGTGCCGTCCGGTCAGCGTGTGATTCA
GAAACATGGTGCTAAAGATGCCCACAAAGATCAGGGCGGCGCCTCTTATC
ATCTGAAAGCTGGTGGCGTAAGTCAAGTAAAGTCCGGTGAACAACAGAAT
GGAGGCTGCCGCATCCAGCAAAGTGGGCAATAGCATGCTAACAGG
BS09096.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10007-PA | 1146 | CG10007-RA | 268..1146 | 895..17 | 4395 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:36:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango9-RB | 3673 | CG10007-RB | 565..1443 | 895..17 | 4395 | 100 | Minus |
Tango9-RA | 1590 | CG10007-RA | 565..1443 | 895..17 | 4395 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:36:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11973237..11974014 | 17..794 | 3890 | 100 | Plus |
3R | 32079331 | 3R | 11974073..11974176 | 792..895 | 520 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 17:36:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy2 | 6841 | gypsy2 GYPSY2 6841bp | 1256..1294 | 356..318 | 114 | 76.9 | Minus |
BS09096.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:59:15 Download gff for
BS09096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10007-PA | 268..1146 | 17..895 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:05:31 Download gff for
BS09096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10007-PA | 268..1146 | 17..895 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:28:52 Download gff for
BS09096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango9-RA | 565..1443 | 17..895 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:15:01 Download gff for
BS09096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango9-RA | 565..1443 | 17..895 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:15:01 Download gff for
BS09096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11973237..11974012 | 17..792 | 100 | <- | Plus |
3R | 11974074..11974176 | 793..895 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:28:52 Download gff for
BS09096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7798959..7799734 | 17..792 | 100 | <- | Plus |
arm_3R | 7799796..7799898 | 793..895 | 100 | | Plus |
BS09096.5prime Sequence
836 bp (778 high quality bases) assembled on 2006-01-24
> BS09096.5prime
GAAGTTATCAGTCGTCATGGATCATCGTGTTTTCCTGTCGCTGATCTTTG
TGCTCAGCGGCACCTTCAACGTTCTGGTGGTGAAGTGGGCCAATCAACAA
CAGGTAATCGGCAGCGATGGAAAACTTCATGGATTTCAACATCCAGTGGT
GTTCACACTGCTCATGTTCCTGGGCGAGTTCCTGTGCTTTGCGGTCTTCA
AGGTGATCCGCCTGATCTCCAATCGTCGTGGAGTTATATCCGATCTGGAT
AGCATCTTGTCGCAGGACAGCAGTGAGTTCCGCCCTGTTAGCATGCTATT
GCCCACTTTGCTGGATGCGGCAGCCTCCATTCTGTTGTTCACCGGACTTT
ACTTGACTTACGCCACCAGCTTTCAGATGATAAGAGGCGCCGCCCTGATC
TTTGTGGGCATCTTTAGCACCATGTTTCTGAATCACACGCTGACCGGACG
GCACTGGCTGGCCATCTTTACGATATCGTGCGGCCTGCTGGACATTATCA
GTCTGGACGTCCATCGCGTTGAATACGACCTGGTCACGTTGCCTTACACG
GACTACAAATCCATTCTGACCGGCGACTTACTCATCATCATTGCTGAAAT
TCTGCACGGACTGCAATATGTTTGCGAGGAGAAACAGCTAANAACCTCGA
ATGTTGCTCCACTGCAAGCTGCTGGCTGGCAGGGAATCTTCGGCTTGGGC
ATCACCTCGATGCTGGCCATTTGCATGAACTTCCTGCCGAGCATTGATCC
ATTTAGCTGTAGTTCGCGTGCAGTTTTCGACGATNGGGGTGATCTCTTTG
CGGCTCTGCAGGGGAGTATCTCANTGATTATGACTC
BS09096.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10007-PA | 1146 | CG10007-RA | 1..820 | 17..836 | 4043 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango9-RB | 3673 | CG10007-RB | 298..1117 | 17..836 | 4067 | 99.6 | Plus |
Tango9-RA | 1590 | CG10007-RA | 298..1117 | 17..836 | 4067 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:05:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11973563..11974014 | 836..385 | 2227 | 99.3 | Minus |
3R | 32079331 | 3R | 11974073..11974227 | 387..233 | 775 | 100 | Minus |
3R | 32079331 | 3R | 11974308..11974457 | 234..85 | 750 | 100 | Minus |
3R | 32079331 | 3R | 11974543..11974613 | 87..17 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:05:23 has no hits.
BS09096.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:59:16 Download gff for
BS09096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10007-PA | 1..820 | 17..836 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:05:32 Download gff for
BS09096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10007-PA | 1..820 | 17..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:24:15 Download gff for
BS09096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango9-RA | 295..1117 | 13..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:40:31 Download gff for
BS09096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango9-RA | 295..1117 | 13..836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:40:31 Download gff for
BS09096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11973563..11974012 | 387..836 | 99 | <- | Minus |
3R | 11974074..11974227 | 233..386 | 100 | <- | Minus |
3R | 11974310..11974457 | 85..232 | 100 | <- | Minus |
3R | 11974546..11974616 | 13..84 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:24:15 Download gff for
BS09096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7799285..7799734 | 387..836 | 99 | <- | Minus |
arm_3R | 7799796..7799949 | 233..386 | 100 | <- | Minus |
arm_3R | 7800032..7800179 | 85..232 | 100 | <- | Minus |
arm_3R | 7800268..7800338 | 13..84 | 97 | | Minus |
BS09096.complete Sequence
1178 bp assembled on 2008-08-15
GenBank Submission: FJ636351
> BS09096.complete
GAAGTTATCAGTCGTCATGGATCATCGTGTTTTCCTGTCGCTGATCTTTG
TGCTCAGCGGCACCTTCAACGTTCTGGTGGTGAAGTGGGCCAATCAACAA
CAGGTAATCGGCAGCGATGGAAAACTTCATGGATTTCAACATCCAGTGGT
GTTCACACTGCTCATGTTCCTGGGCGAGTTCCTGTGCTTTGCGGTCTTCA
AGGTGATCCGCCTGATCTCCAATCGTCGTGGAGTTATATCCGATCTGGAT
AGCATCTTGTCGCAGGACAGCAGTGAGTTCCGCCCTGTTAGCATGCTATT
GCCCACTTTGCTGGATGCGGCAGCCTCCATTCTGTTGTTCACCGGACTTT
ACTTGACTTACGCCACCAGCTTTCAGATGATAAGAGGCGCCGCCCTGATC
TTTGTGGGCATCTTTAGCACCATGTTTCTGAATCACACGCTGACCGGACG
GCACTGGCTGGCCATCTTTACGATATCGTGCGGCCTGCTGGACATTATCA
GTCTGGACGTCCATCGCGTTGAATACGACCTGGTCACGTTGCCTTACACG
GACTACAAATCCATTCTGACCGGCGACTTACTCATCATCATTGCTGAAAT
TCTGCACGGACTGCAATATGTTTGCGAGGAGAAACAGCTAAAAACCTCGA
ATGTTGCTCCACTGCAAGCTGCTGGCTGGCAGGGAATCTTCGGCTTGGGC
ATCACCTCGATGCTGGCCATTTGCATGAACTTCCTGCCGAGCATTGATCC
ATTTAGCTGTAGTTCGCGTGCAGTTTTCGACGATTGGGGTGATCTCTTTG
CGGCTCTGCAGGGGAGTATCTCATTGATTATGACTCTGATTGCCTTCACC
ATCTCATGTGCCATGTACAACTTCATTGGACTGTACATTGCGATGTACTC
GTCCAGCGCCAACCGGCTTCTGGCCGATGGCCTACGCGTTTACTTCATCT
GGGTGTTTGTGATTATCATGGAGTGGGAGTACATGAATCTGGTCACGATC
ATGGGCTTCCTCATCCTGCAAATGGGTATCATCCTCTACCGACAGGCCCT
ATTCCTCGACTGGTATCGAGCTGCAGTGGCCCGCTGGTATCGTGCTCGTT
ACGTGGATTTGGGTACTGAGAATGCGGCTGCTCCGAACAGCCGGCCAGCG
GATGTGATCTAAAAGCTTTCTAGACCAT
BS09096.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:04:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango9-RB | 1146 | CG10007-PB | 1..1146 | 17..1162 | 5730 | 100 | Plus |
Tango9-RA | 1146 | CG10007-PA | 1..1146 | 17..1162 | 5730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:04:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango9-RB | 3673 | CG10007-RB | 298..1443 | 17..1162 | 5730 | 100 | Plus |
Tango9-RA | 1590 | CG10007-RA | 298..1443 | 17..1162 | 5730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:04:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11973237..11974014 | 1162..385 | 3890 | 100 | Minus |
3R | 32079331 | 3R | 11974073..11974227 | 387..233 | 775 | 100 | Minus |
3R | 32079331 | 3R | 11974308..11974457 | 234..85 | 750 | 100 | Minus |
3R | 32079331 | 3R | 11974543..11974613 | 87..17 | 355 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 11:04:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy2 | 6841 | gypsy2 GYPSY2 6841bp | 1256..1294 | 823..861 | 114 | 76.9 | Plus |
BS09096.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:54:15 Download gff for
BS09096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango9-RA | 250..1398 | 13..1162 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:31 Download gff for
BS09096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango9-RA | 298..1441 | 17..1160 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:28 Download gff for
BS09096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango9-RA | 253..1396 | 17..1160 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:22 Download gff for
BS09096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango9-RA | 298..1441 | 17..1160 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:22 Download gff for
BS09096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11973239..11974012 | 387..1160 | 100 | <- | Minus |
3R | 11974074..11974227 | 233..386 | 100 | <- | Minus |
3R | 11974310..11974457 | 85..232 | 100 | <- | Minus |
3R | 11974546..11974613 | 17..84 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:31 Download gff for
BS09096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7798961..7799734 | 387..1160 | 100 | <- | Minus |
arm_3R | 7799796..7799949 | 233..386 | 100 | <- | Minus |
arm_3R | 7800032..7800179 | 85..232 | 100 | <- | Minus |
arm_3R | 7800268..7800335 | 17..84 | 100 | | Minus |
BS09096.pep Sequence
Translation from 16 to 1161
> BS09096.pep
MDHRVFLSLIFVLSGTFNVLVVKWANQQQVIGSDGKLHGFQHPVVFTLLM
FLGEFLCFAVFKVIRLISNRRGVISDLDSILSQDSSEFRPVSMLLPTLLD
AAASILLFTGLYLTYATSFQMIRGAALIFVGIFSTMFLNHTLTGRHWLAI
FTISCGLLDIISLDVHRVEYDLVTLPYTDYKSILTGDLLIIIAEILHGLQ
YVCEEKQLKTSNVAPLQAAGWQGIFGLGITSMLAICMNFLPSIDPFSCSS
RAVFDDWGDLFAALQGSISLIMTLIAFTISCAMYNFIGLYIAMYSSSANR
LLADGLRVYFIWVFVIIMEWEYMNLVTIMGFLILQMGIILYRQALFLDWY
RAAVARWYRARYVDLGTENAAAPNSRPADVI*
BS09096.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:33:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango9-PB | 381 | CG10007-PB | 1..381 | 1..381 | 1950 | 100 | Plus |
Tango9-PA | 381 | CG10007-PA | 1..381 | 1..381 | 1950 | 100 | Plus |