Clone BS09096 Report

Search the DGRC for BS09096

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:90
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptTango9-RA
Protein status:BS09096.pep: full length peptide match
Sequenced Size:1178

Clone Sequence Records

BS09096.3prime Sequence

895 bp (871 high quality bases) assembled on 2006-01-24

> BS09096.3prime
ATGGTCTAGAAAGCTTTTAGATCACATCCGCTGGCCGGCTGTTCGGAGCA
GCCGCATTCTCAGTACCCAAATCCACGTAACGAGCACGATACCAGCGGGC
CACTGCAGCTCGATACCAGTCGAGGAATAGGGCCTGTCGGTAGAGGATGA
TACCCATTTGCAGGATGAGGAAGCCCATGATCGTGACCAGATTCATGTAC
TCCCACTCCATGATAATCACAAACACCCAGATGAAGTAAACGCGTAGGCC
ATCGGCCAGAAGCCGGTTGGCGCTGGACGAGTACATCGCAATGTACAGTC
CAATGAAGTTGTACATGGCACATGAGATGGTGAAGGCAATCAGAGTCATA
ATCAATGAGATACTCCCCTGCAGAGCCGCAAAGAGATCACCCCAATCGTC
GAAAACTGCACGCGAACTACAGCTAAATGGATCAATGCTCGGCAGGAAGT
TCATGCAAATGGCCAGCATCGAGGTGATGCCCAAGCCGAAGATTCCCTGC
CAGCCAGCAGCTTGCAGTGGAGCAACATTCGAGGTTTTTAGCTGTTTCTC
CTCGCAAACATATTGCAGTCCGTGCAGAATTTCAGCAATGATGATGAGTA
AGTCGCCGGTCAGAATGGATTTGTAGTCCGTGTAAGGCAACGTGACCAGG
TCGTATTCAACGCGATGGACGTCCAGACTGATAATGTCCAGCAGGCCGCA
CGATATCGTAAAGATGGCCAGCCAGTGCCGTCCGGTCAGCGTGTGATTCA
GAAACATGGTGCTAAAGATGCCCACAAAGATCAGGGCGGCGCCTCTTATC
ATCTGAAAGCTGGTGGCGTAAGTCAAGTAAAGTCCGGTGAACAACAGAAT
GGAGGCTGCCGCATCCAGCAAAGTGGGCAATAGCATGCTAACAGG

BS09096.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG10007-PA 1146 CG10007-RA 268..1146 895..17 4395 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:36:11
Subject Length Description Subject Range Query Range Score Percent Strand
Tango9-RB 3673 CG10007-RB 565..1443 895..17 4395 100 Minus
Tango9-RA 1590 CG10007-RA 565..1443 895..17 4395 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:36:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11973237..11974014 17..794 3890 100 Plus
3R 32079331 3R 11974073..11974176 792..895 520 100 Plus
Blast to na_te.dros performed 2015-02-11 17:36:08
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy2 6841 gypsy2 GYPSY2 6841bp 1256..1294 356..318 114 76.9 Minus

BS09096.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:59:15 Download gff for BS09096.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10007-PA 268..1146 17..895 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:05:31 Download gff for BS09096.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10007-PA 268..1146 17..895 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:28:52 Download gff for BS09096.3prime
Subject Subject Range Query Range Percent Splice Strand
Tango9-RA 565..1443 17..895 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:15:01 Download gff for BS09096.3prime
Subject Subject Range Query Range Percent Splice Strand
Tango9-RA 565..1443 17..895 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:15:01 Download gff for BS09096.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11973237..11974012 17..792 100 <- Plus
3R 11974074..11974176 793..895 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:28:52 Download gff for BS09096.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7798959..7799734 17..792 100 <- Plus
arm_3R 7799796..7799898 793..895 100   Plus

BS09096.5prime Sequence

836 bp (778 high quality bases) assembled on 2006-01-24

> BS09096.5prime
GAAGTTATCAGTCGTCATGGATCATCGTGTTTTCCTGTCGCTGATCTTTG
TGCTCAGCGGCACCTTCAACGTTCTGGTGGTGAAGTGGGCCAATCAACAA
CAGGTAATCGGCAGCGATGGAAAACTTCATGGATTTCAACATCCAGTGGT
GTTCACACTGCTCATGTTCCTGGGCGAGTTCCTGTGCTTTGCGGTCTTCA
AGGTGATCCGCCTGATCTCCAATCGTCGTGGAGTTATATCCGATCTGGAT
AGCATCTTGTCGCAGGACAGCAGTGAGTTCCGCCCTGTTAGCATGCTATT
GCCCACTTTGCTGGATGCGGCAGCCTCCATTCTGTTGTTCACCGGACTTT
ACTTGACTTACGCCACCAGCTTTCAGATGATAAGAGGCGCCGCCCTGATC
TTTGTGGGCATCTTTAGCACCATGTTTCTGAATCACACGCTGACCGGACG
GCACTGGCTGGCCATCTTTACGATATCGTGCGGCCTGCTGGACATTATCA
GTCTGGACGTCCATCGCGTTGAATACGACCTGGTCACGTTGCCTTACACG
GACTACAAATCCATTCTGACCGGCGACTTACTCATCATCATTGCTGAAAT
TCTGCACGGACTGCAATATGTTTGCGAGGAGAAACAGCTAANAACCTCGA
ATGTTGCTCCACTGCAAGCTGCTGGCTGGCAGGGAATCTTCGGCTTGGGC
ATCACCTCGATGCTGGCCATTTGCATGAACTTCCTGCCGAGCATTGATCC
ATTTAGCTGTAGTTCGCGTGCAGTTTTCGACGATNGGGGTGATCTCTTTG
CGGCTCTGCAGGGGAGTATCTCANTGATTATGACTC

BS09096.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG10007-PA 1146 CG10007-RA 1..820 17..836 4043 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
Tango9-RB 3673 CG10007-RB 298..1117 17..836 4067 99.6 Plus
Tango9-RA 1590 CG10007-RA 298..1117 17..836 4067 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11973563..11974014 836..385 2227 99.3 Minus
3R 32079331 3R 11974073..11974227 387..233 775 100 Minus
3R 32079331 3R 11974308..11974457 234..85 750 100 Minus
3R 32079331 3R 11974543..11974613 87..17 355 100 Minus
Blast to na_te.dros performed on 2015-02-12 20:05:23 has no hits.

BS09096.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:59:16 Download gff for BS09096.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10007-PA 1..820 17..836 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:05:32 Download gff for BS09096.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10007-PA 1..820 17..836 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:24:15 Download gff for BS09096.5prime
Subject Subject Range Query Range Percent Splice Strand
Tango9-RA 295..1117 13..836 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:40:31 Download gff for BS09096.5prime
Subject Subject Range Query Range Percent Splice Strand
Tango9-RA 295..1117 13..836 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:40:31 Download gff for BS09096.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11973563..11974012 387..836 99 <- Minus
3R 11974074..11974227 233..386 100 <- Minus
3R 11974310..11974457 85..232 100 <- Minus
3R 11974546..11974616 13..84 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:24:15 Download gff for BS09096.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7799285..7799734 387..836 99 <- Minus
arm_3R 7799796..7799949 233..386 100 <- Minus
arm_3R 7800032..7800179 85..232 100 <- Minus
arm_3R 7800268..7800338 13..84 97   Minus

BS09096.complete Sequence

1178 bp assembled on 2008-08-15

GenBank Submission: FJ636351

> BS09096.complete
GAAGTTATCAGTCGTCATGGATCATCGTGTTTTCCTGTCGCTGATCTTTG
TGCTCAGCGGCACCTTCAACGTTCTGGTGGTGAAGTGGGCCAATCAACAA
CAGGTAATCGGCAGCGATGGAAAACTTCATGGATTTCAACATCCAGTGGT
GTTCACACTGCTCATGTTCCTGGGCGAGTTCCTGTGCTTTGCGGTCTTCA
AGGTGATCCGCCTGATCTCCAATCGTCGTGGAGTTATATCCGATCTGGAT
AGCATCTTGTCGCAGGACAGCAGTGAGTTCCGCCCTGTTAGCATGCTATT
GCCCACTTTGCTGGATGCGGCAGCCTCCATTCTGTTGTTCACCGGACTTT
ACTTGACTTACGCCACCAGCTTTCAGATGATAAGAGGCGCCGCCCTGATC
TTTGTGGGCATCTTTAGCACCATGTTTCTGAATCACACGCTGACCGGACG
GCACTGGCTGGCCATCTTTACGATATCGTGCGGCCTGCTGGACATTATCA
GTCTGGACGTCCATCGCGTTGAATACGACCTGGTCACGTTGCCTTACACG
GACTACAAATCCATTCTGACCGGCGACTTACTCATCATCATTGCTGAAAT
TCTGCACGGACTGCAATATGTTTGCGAGGAGAAACAGCTAAAAACCTCGA
ATGTTGCTCCACTGCAAGCTGCTGGCTGGCAGGGAATCTTCGGCTTGGGC
ATCACCTCGATGCTGGCCATTTGCATGAACTTCCTGCCGAGCATTGATCC
ATTTAGCTGTAGTTCGCGTGCAGTTTTCGACGATTGGGGTGATCTCTTTG
CGGCTCTGCAGGGGAGTATCTCATTGATTATGACTCTGATTGCCTTCACC
ATCTCATGTGCCATGTACAACTTCATTGGACTGTACATTGCGATGTACTC
GTCCAGCGCCAACCGGCTTCTGGCCGATGGCCTACGCGTTTACTTCATCT
GGGTGTTTGTGATTATCATGGAGTGGGAGTACATGAATCTGGTCACGATC
ATGGGCTTCCTCATCCTGCAAATGGGTATCATCCTCTACCGACAGGCCCT
ATTCCTCGACTGGTATCGAGCTGCAGTGGCCCGCTGGTATCGTGCTCGTT
ACGTGGATTTGGGTACTGAGAATGCGGCTGCTCCGAACAGCCGGCCAGCG
GATGTGATCTAAAAGCTTTCTAGACCAT

BS09096.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
Tango9-RB 1146 CG10007-PB 1..1146 17..1162 5730 100 Plus
Tango9-RA 1146 CG10007-PA 1..1146 17..1162 5730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
Tango9-RB 3673 CG10007-RB 298..1443 17..1162 5730 100 Plus
Tango9-RA 1590 CG10007-RA 298..1443 17..1162 5730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:04:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11973237..11974014 1162..385 3890 100 Minus
3R 32079331 3R 11974073..11974227 387..233 775 100 Minus
3R 32079331 3R 11974308..11974457 234..85 750 100 Minus
3R 32079331 3R 11974543..11974613 87..17 355 100 Minus
Blast to na_te.dros performed 2014-11-27 11:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy2 6841 gypsy2 GYPSY2 6841bp 1256..1294 823..861 114 76.9 Plus

BS09096.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:54:15 Download gff for BS09096.complete
Subject Subject Range Query Range Percent Splice Strand
Tango9-RA 250..1398 13..1162 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:31 Download gff for BS09096.complete
Subject Subject Range Query Range Percent Splice Strand
Tango9-RA 298..1441 17..1160 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:28 Download gff for BS09096.complete
Subject Subject Range Query Range Percent Splice Strand
Tango9-RA 253..1396 17..1160 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:22 Download gff for BS09096.complete
Subject Subject Range Query Range Percent Splice Strand
Tango9-RA 298..1441 17..1160 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:22 Download gff for BS09096.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11973239..11974012 387..1160 100 <- Minus
3R 11974074..11974227 233..386 100 <- Minus
3R 11974310..11974457 85..232 100 <- Minus
3R 11974546..11974613 17..84 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:31 Download gff for BS09096.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7798961..7799734 387..1160 100 <- Minus
arm_3R 7799796..7799949 233..386 100 <- Minus
arm_3R 7800032..7800179 85..232 100 <- Minus
arm_3R 7800268..7800335 17..84 100   Minus

BS09096.pep Sequence

Translation from 16 to 1161

> BS09096.pep
MDHRVFLSLIFVLSGTFNVLVVKWANQQQVIGSDGKLHGFQHPVVFTLLM
FLGEFLCFAVFKVIRLISNRRGVISDLDSILSQDSSEFRPVSMLLPTLLD
AAASILLFTGLYLTYATSFQMIRGAALIFVGIFSTMFLNHTLTGRHWLAI
FTISCGLLDIISLDVHRVEYDLVTLPYTDYKSILTGDLLIIIAEILHGLQ
YVCEEKQLKTSNVAPLQAAGWQGIFGLGITSMLAICMNFLPSIDPFSCSS
RAVFDDWGDLFAALQGSISLIMTLIAFTISCAMYNFIGLYIAMYSSSANR
LLADGLRVYFIWVFVIIMEWEYMNLVTIMGFLILQMGIILYRQALFLDWY
RAAVARWYRARYVDLGTENAAAPNSRPADVI*

BS09096.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
Tango9-PB 381 CG10007-PB 1..381 1..381 1950 100 Plus
Tango9-PA 381 CG10007-PA 1..381 1..381 1950 100 Plus