Clone BS09103 Report

Search the DGRC for BS09103

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:91
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptHmg-2-RA
Protein status:BS09103.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09103.3prime Sequence

953 bp (893 high quality bases) assembled on 2006-01-24

> BS09103.3prime
ATGGTCTAGAAAGCTTTCACGGTTTTAGCAAGCTACTGGTGTCCACTTTA
CGCAGCGCCTCTCGTGCCTTAATCAAAGTGACGTTGCTTGGCTGAGTGAC
GAGCCCGGCTAAGTGCCGGATGTACTTGTCAATGTTGCCAACGCTGGGAC
CACTTGGCTCCAGTGGTGGCATCGAGATTCCGCCGAGAGCTGCGACCAGT
TTCTGGCGCAAGGCGCGCAAATAGGTCTCCAGGCGTTGGTTCTCCTCCAT
GAGCTCAGTTACCTCGCCCATCACCTTGGCGTACCCGGCTTTCGTATTAT
CTACGTGCTGTTCCAGCACAGCGTTCTGCTGCTCCAGATCGGTCTTGGCC
TTGCGCAGCGTCCTCAGCTCATTCTCCGTGCTGCGATTGTGTTCGATGAA
CTCGTTGGTGTAGATGGGTATCTCGCCGGGCTGCAGCGGTCGTGGTGCAG
GTGTCGCAGGTGGCACGCTGCTGGGAGGGGGCTGTACTGGAGCCGCTGGC
GGTGTGGGAGGCGGTGGTGTCTGGGCACGCTTCACCTTGGCCAGAGGCAC
ATCATCCGGATCCTCGCTCTGCCGCTTAACCGGCTTTGCCTTGGTCTTCT
TCGCCTTGCCCAAGGCTGATTCACCCTTCGGCGTCTTTTCCTTGGGCGAA
CCATCCAGTTTTGTGGCTTTCTTGGCTTTGGCCAACTCGTTGGCCACAAT
TTCGGGGTGTTCCTTGAGAAACATTTGCAACTGCTCCTGATATATGGCCT
TGTCCTTGGCGGCTGCCTCGATGTAGGGCAACTTGCGCTCCTCGGGCAGC
TGATGCCACTCCTCGCCGATGATCCTTGTGTGCTCCAGGGCAGTACGTTG
TGGCTGCTCCCGTCGCAGTTCCTCGCGTCGATCGTTCATGAAGCGGACGT
AGCCATTAAGTGGCATTTTTGGAGCACCGGCTACGTTGATCCGGCGCTGG
GCC

BS09103.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG9418-PA 1131 CG9418-RA 195..1131 953..17 4685 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
Hmg-2-RA 1347 CG9418-RA 293..1229 953..17 4685 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21146764..21147490 743..17 3635 100 Minus
2R 25286936 2R 21146495..21146704 953..744 1050 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:47:31 has no hits.

BS09103.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:59:21 Download gff for BS09103.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9418-PA 195..1131 17..953 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:05:41 Download gff for BS09103.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9418-PA 195..1131 17..953 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:15:21 Download gff for BS09103.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9418-RA 293..1229 17..953 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:44 Download gff for BS09103.3prime
Subject Subject Range Query Range Percent Splice Strand
Hmg-2-RA 293..1229 17..953 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:44 Download gff for BS09103.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21146495..21146704 744..953 100 -> Minus
2R 21146764..21147490 17..743 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:15:21 Download gff for BS09103.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17034000..17034209 744..953 100 -> Minus
arm_2R 17034269..17034995 17..743 100   Minus

BS09103.5prime Sequence

952 bp (817 high quality bases) assembled on 2006-01-24

> BS09103.5prime
GAAGTTATCAGTCGACATGACGGAACCAACGAGCAAGACACCGGATGCGG
TTCCGGAATCACCCGTATCACTGCCCATCGCCTCCCAATCCATGGATACG
GCGACCATTGAAGATTTCGACGAGGACAAACCGGCCAAGGGAAAGAAGAA
AGCCAAGAATCCAAAGGGTCGCCACTCGGATTCCGACATCGGCTCCGAAC
TGAAGAAGCTGGCCCAGCGCCGGATCAACGTAGCCGGTGCTCCAAAAATG
CCACTTAATGGCTACGTCCGCTTCATGAACGATCGACGCGAGGAACTGCG
ACGGGAGCAGCCACAACGTACTGCCCTGGAGCACACAAGGATCATCGGCG
AGGAGTGGCATCAGCTGCCCGAGGAGCGCAAGTTGCCCTACATCGAGGCA
GCCGCCAAGGACAAGGCCATATATCAGGAGCAGTTGCAAATGTTTCTCAA
GGAACACCCCGAAATTGTGGCCAACGAGTTGGCCAAAGCCAAGAAAGCCA
CAAAACTGGATGGTTCGCCCAAGGAAAAGACGCCGAAGGGTGAATCAGCC
TTGGGCAAGGCGAAGAAGACCAAGGCAAAGCCGGTTAAGCGGCAGAGCGA
GGATCCGGATGATGTGCCTCTGGCCAAGGTGAAGCGTGCCCAGACACCAC
CGCCTCCCACACCGCCAGCGGCTCCAGTACAGCCCCCTCCCAGCAGCGTG
CCACCTGCGACACCTGCACCACGACCGCTGCAGCCCGGCGAGATACCCAT
CTACACCAACGAGTTCATCGAACACAATCGCAGCACGGAGAATGAGCTGA
GGACGCTGCGCAAGGCCAAGACCGATCTGGAGCAGCAGAACGCTGTGCTG
GAACAGCACGTAGATAATACGAAAGCCCGGGTACGCCAGGTGATGGGCGA
GGGTACTGAGCTCATGGAGGAGAACCACGCCTGGAGACCTATTTGCGCGC
CT

BS09103.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9418-PA 1131 CG9418-RA 1..861 17..877 4305 100 Plus
CG9418-PA 1131 CG9418-RA 872..911 888..927 150 95 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
Hmg-2-RA 1347 CG9418-RA 99..1035 17..952 4585 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21146764..21147296 421..952 2490 99.1 Plus
2R 25286936 2R 21146301..21146704 17..420 2020 100 Plus
Blast to na_te.dros performed on 2015-02-04 03:49:49 has no hits.

BS09103.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:59:22 Download gff for BS09103.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9418-PA 1..937 17..952 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:05:43 Download gff for BS09103.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9418-PA 1..937 17..952 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:57:05 Download gff for BS09103.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9418-RA 94..1035 9..952 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:32:09 Download gff for BS09103.5prime
Subject Subject Range Query Range Percent Splice Strand
Hmg-2-RA 94..1035 9..952 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:32:09 Download gff for BS09103.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21146764..21147296 421..952 99   Plus
2R 21146296..21146704 9..420 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:57:05 Download gff for BS09103.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17033801..17034209 9..420 99 -> Plus
arm_2R 17034269..17034801 421..952 99   Plus

BS09103.complete Sequence

1163 bp (1163 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636352

> BS09103.complete
GAAGTTATCAGTCGACATGACGGAACCAACGAGCAAGACACCGGATGCGG
TTCCGGAATCACCCGTATCACTGCCCATCGCCTCCCAATCCATGGATACG
GCGACCATTGAAGATTTCGACGAGGACAAACCGGCCAAGGGAAAGAAGAA
AGCCAAGAATCCAAAGGGTCGCCACTCGGATTCCGACATCGGCTCCGAAC
TGAAGAAGCTGGCCCAGCGCCGGATCAACGTAGCCGGTGCTCCAAAAATG
CCACTTAATGGCTACGTCCGCTTCATGAACGATCGACGCGAGGAACTGCG
ACGGGAGCAGCCACAACGTACTGCCCTGGAGCACACAAGGATCATCGGCG
AGGAGTGGCATCAGCTGCCCGAGGAGCGCAAGTTGCCCTACATCGAGGCA
GCCGCCAAGGACAAGGCCATATATCAGGAGCAGTTGCAAATGTTTCTCAA
GGAACACCCCGAAATTGTGGCCAACGAGTTGGCCAAAGCCAAGAAAGCCA
CAAAACTGGATGGTTCGCCCAAGGAAAAGACGCCGAAGGGTGAATCAGCC
TTGGGCAAGGCGAAGAAGACCAAGGCAAAGCCGGTTAAGCGGCAGAGCGA
GGATCCGGATGATGTGCCTCTGGCCAAGGTGAAGCGTGCCCAGACACCAC
CGCCTCCCACACCGCCAGCGGCTCCAGTACAGCCCCCTCCCAGCAGCGTG
CCACCTGCGACACCTGCACCACGACCGCTGCAGCCCGGCGAGATACCCAT
CTACACCAACGAGTTCATCGAACACAATCGCAGCACGGAGAATGAGCTGA
GGACGCTGCGCAAGGCCAAGACCGATCTGGAGCAGCAGAACGCTGTGCTG
GAACAGCACGTAGATAATACGAAAGCCGGGTACGCCAAGGTGATGGGCGA
GGTAACTGAGCTCATGGAGGAGAACCAACGCCTGGAGACCTATTTGCGCG
CCTTGCGCCAGAAACTGGTCGCAGCTCTCGGCGGAATCTCGATGCCACCA
CTGGAGCCAAGTGGTCCCAGCGTTGGCAACATTGACAAGTACATCCGGCA
CTTAGCCGGGCTCGTCACTCAGCCAAGCAACGTCACTTTGATTAAGGCAC
GAGAGGCGCTGCGTAAAGTGGACACCAGTAGCTTGCTAAAACCGTGAAAG
CTTTCTAGACCAT

BS09103.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:40:28
Subject Length Description Subject Range Query Range Score Percent Strand
Hmg-2-RA 1131 CG9418-PA 1..1131 17..1147 5655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
Hmg-2-RA 1347 CG9418-RA 99..1229 17..1147 5655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:40:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21146764..21147490 421..1147 3635 100 Plus
2R 25286936 2R 21146301..21146704 17..420 2020 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:40:27 has no hits.

BS09103.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:10 Download gff for BS09103.complete
Subject Subject Range Query Range Percent Splice Strand
CG9418-RA 1..1131 17..1147 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:52 Download gff for BS09103.complete
Subject Subject Range Query Range Percent Splice Strand
CG9418-RA 89..1224 9..1147 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:02 Download gff for BS09103.complete
Subject Subject Range Query Range Percent Splice Strand
CG9418-RA 99..1228 17..1146 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:10 Download gff for BS09103.complete
Subject Subject Range Query Range Percent Splice Strand
CG9418-RA 89..1224 9..1147 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:20 Download gff for BS09103.complete
Subject Subject Range Query Range Percent Splice Strand
Hmg-2-RA 99..1228 17..1146 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:20 Download gff for BS09103.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21146301..21146704 17..420 100 -> Plus
2R 21146764..21147489 421..1146 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:02 Download gff for BS09103.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17033806..17034209 17..420 100 -> Plus
arm_2R 17034269..17034994 421..1146 100   Plus

BS09103.pep Sequence

Translation from 16 to 1146

> BS09103.pep
MTEPTSKTPDAVPESPVSLPIASQSMDTATIEDFDEDKPAKGKKKAKNPK
GRHSDSDIGSELKKLAQRRINVAGAPKMPLNGYVRFMNDRREELRREQPQ
RTALEHTRIIGEEWHQLPEERKLPYIEAAAKDKAIYQEQLQMFLKEHPEI
VANELAKAKKATKLDGSPKEKTPKGESALGKAKKTKAKPVKRQSEDPDDV
PLAKVKRAQTPPPPTPPAAPVQPPPSSVPPATPAPRPLQPGEIPIYTNEF
IEHNRSTENELRTLRKAKTDLEQQNAVLEQHVDNTKAGYAKVMGEVTELM
EENQRLETYLRALRQKLVAALGGISMPPLEPSGPSVGNIDKYIRHLAGLV
TQPSNVTLIKAREALRKVDTSSLLKP*

BS09103.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
Hmg-2-PA 376 CG9418-PA 1..376 1..376 1931 100 Plus
Ssrp-PA 723 CG4817-PA 482..703 3..214 161 25.3 Plus