Clone Sequence Records
BS09103.3prime Sequence
953 bp (893 high quality bases) assembled on 2006-01-24
> BS09103.3prime
ATGGTCTAGAAAGCTTTCACGGTTTTAGCAAGCTACTGGTGTCCACTTTA
CGCAGCGCCTCTCGTGCCTTAATCAAAGTGACGTTGCTTGGCTGAGTGAC
GAGCCCGGCTAAGTGCCGGATGTACTTGTCAATGTTGCCAACGCTGGGAC
CACTTGGCTCCAGTGGTGGCATCGAGATTCCGCCGAGAGCTGCGACCAGT
TTCTGGCGCAAGGCGCGCAAATAGGTCTCCAGGCGTTGGTTCTCCTCCAT
GAGCTCAGTTACCTCGCCCATCACCTTGGCGTACCCGGCTTTCGTATTAT
CTACGTGCTGTTCCAGCACAGCGTTCTGCTGCTCCAGATCGGTCTTGGCC
TTGCGCAGCGTCCTCAGCTCATTCTCCGTGCTGCGATTGTGTTCGATGAA
CTCGTTGGTGTAGATGGGTATCTCGCCGGGCTGCAGCGGTCGTGGTGCAG
GTGTCGCAGGTGGCACGCTGCTGGGAGGGGGCTGTACTGGAGCCGCTGGC
GGTGTGGGAGGCGGTGGTGTCTGGGCACGCTTCACCTTGGCCAGAGGCAC
ATCATCCGGATCCTCGCTCTGCCGCTTAACCGGCTTTGCCTTGGTCTTCT
TCGCCTTGCCCAAGGCTGATTCACCCTTCGGCGTCTTTTCCTTGGGCGAA
CCATCCAGTTTTGTGGCTTTCTTGGCTTTGGCCAACTCGTTGGCCACAAT
TTCGGGGTGTTCCTTGAGAAACATTTGCAACTGCTCCTGATATATGGCCT
TGTCCTTGGCGGCTGCCTCGATGTAGGGCAACTTGCGCTCCTCGGGCAGC
TGATGCCACTCCTCGCCGATGATCCTTGTGTGCTCCAGGGCAGTACGTTG
TGGCTGCTCCCGTCGCAGTTCCTCGCGTCGATCGTTCATGAAGCGGACGT
AGCCATTAAGTGGCATTTTTGGAGCACCGGCTACGTTGATCCGGCGCTGG
GCC
BS09103.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9418-PA | 1131 | CG9418-RA | 195..1131 | 953..17 | 4685 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:47:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hmg-2-RA | 1347 | CG9418-RA | 293..1229 | 953..17 | 4685 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:47:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21146764..21147490 | 743..17 | 3635 | 100 | Minus |
2R | 25286936 | 2R | 21146495..21146704 | 953..744 | 1050 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:47:31 has no hits.
BS09103.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:59:21 Download gff for
BS09103.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9418-PA | 195..1131 | 17..953 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:05:41 Download gff for
BS09103.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9418-PA | 195..1131 | 17..953 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:15:21 Download gff for
BS09103.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9418-RA | 293..1229 | 17..953 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:44 Download gff for
BS09103.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hmg-2-RA | 293..1229 | 17..953 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:44 Download gff for
BS09103.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21146495..21146704 | 744..953 | 100 | -> | Minus |
2R | 21146764..21147490 | 17..743 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:15:21 Download gff for
BS09103.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17034000..17034209 | 744..953 | 100 | -> | Minus |
arm_2R | 17034269..17034995 | 17..743 | 100 | | Minus |
BS09103.5prime Sequence
952 bp (817 high quality bases) assembled on 2006-01-24
> BS09103.5prime
GAAGTTATCAGTCGACATGACGGAACCAACGAGCAAGACACCGGATGCGG
TTCCGGAATCACCCGTATCACTGCCCATCGCCTCCCAATCCATGGATACG
GCGACCATTGAAGATTTCGACGAGGACAAACCGGCCAAGGGAAAGAAGAA
AGCCAAGAATCCAAAGGGTCGCCACTCGGATTCCGACATCGGCTCCGAAC
TGAAGAAGCTGGCCCAGCGCCGGATCAACGTAGCCGGTGCTCCAAAAATG
CCACTTAATGGCTACGTCCGCTTCATGAACGATCGACGCGAGGAACTGCG
ACGGGAGCAGCCACAACGTACTGCCCTGGAGCACACAAGGATCATCGGCG
AGGAGTGGCATCAGCTGCCCGAGGAGCGCAAGTTGCCCTACATCGAGGCA
GCCGCCAAGGACAAGGCCATATATCAGGAGCAGTTGCAAATGTTTCTCAA
GGAACACCCCGAAATTGTGGCCAACGAGTTGGCCAAAGCCAAGAAAGCCA
CAAAACTGGATGGTTCGCCCAAGGAAAAGACGCCGAAGGGTGAATCAGCC
TTGGGCAAGGCGAAGAAGACCAAGGCAAAGCCGGTTAAGCGGCAGAGCGA
GGATCCGGATGATGTGCCTCTGGCCAAGGTGAAGCGTGCCCAGACACCAC
CGCCTCCCACACCGCCAGCGGCTCCAGTACAGCCCCCTCCCAGCAGCGTG
CCACCTGCGACACCTGCACCACGACCGCTGCAGCCCGGCGAGATACCCAT
CTACACCAACGAGTTCATCGAACACAATCGCAGCACGGAGAATGAGCTGA
GGACGCTGCGCAAGGCCAAGACCGATCTGGAGCAGCAGAACGCTGTGCTG
GAACAGCACGTAGATAATACGAAAGCCCGGGTACGCCAGGTGATGGGCGA
GGGTACTGAGCTCATGGAGGAGAACCACGCCTGGAGACCTATTTGCGCGC
CT
BS09103.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9418-PA | 1131 | CG9418-RA | 1..861 | 17..877 | 4305 | 100 | Plus |
CG9418-PA | 1131 | CG9418-RA | 872..911 | 888..927 | 150 | 95 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:49:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hmg-2-RA | 1347 | CG9418-RA | 99..1035 | 17..952 | 4585 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:49:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21146764..21147296 | 421..952 | 2490 | 99.1 | Plus |
2R | 25286936 | 2R | 21146301..21146704 | 17..420 | 2020 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:49:49 has no hits.
BS09103.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:59:22 Download gff for
BS09103.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9418-PA | 1..937 | 17..952 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:05:43 Download gff for
BS09103.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9418-PA | 1..937 | 17..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:57:05 Download gff for
BS09103.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9418-RA | 94..1035 | 9..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:32:09 Download gff for
BS09103.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hmg-2-RA | 94..1035 | 9..952 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:32:09 Download gff for
BS09103.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21146764..21147296 | 421..952 | 99 | | Plus |
2R | 21146296..21146704 | 9..420 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:57:05 Download gff for
BS09103.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17033801..17034209 | 9..420 | 99 | -> | Plus |
arm_2R | 17034269..17034801 | 421..952 | 99 | | Plus |
BS09103.complete Sequence
1163 bp (1163 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636352
> BS09103.complete
GAAGTTATCAGTCGACATGACGGAACCAACGAGCAAGACACCGGATGCGG
TTCCGGAATCACCCGTATCACTGCCCATCGCCTCCCAATCCATGGATACG
GCGACCATTGAAGATTTCGACGAGGACAAACCGGCCAAGGGAAAGAAGAA
AGCCAAGAATCCAAAGGGTCGCCACTCGGATTCCGACATCGGCTCCGAAC
TGAAGAAGCTGGCCCAGCGCCGGATCAACGTAGCCGGTGCTCCAAAAATG
CCACTTAATGGCTACGTCCGCTTCATGAACGATCGACGCGAGGAACTGCG
ACGGGAGCAGCCACAACGTACTGCCCTGGAGCACACAAGGATCATCGGCG
AGGAGTGGCATCAGCTGCCCGAGGAGCGCAAGTTGCCCTACATCGAGGCA
GCCGCCAAGGACAAGGCCATATATCAGGAGCAGTTGCAAATGTTTCTCAA
GGAACACCCCGAAATTGTGGCCAACGAGTTGGCCAAAGCCAAGAAAGCCA
CAAAACTGGATGGTTCGCCCAAGGAAAAGACGCCGAAGGGTGAATCAGCC
TTGGGCAAGGCGAAGAAGACCAAGGCAAAGCCGGTTAAGCGGCAGAGCGA
GGATCCGGATGATGTGCCTCTGGCCAAGGTGAAGCGTGCCCAGACACCAC
CGCCTCCCACACCGCCAGCGGCTCCAGTACAGCCCCCTCCCAGCAGCGTG
CCACCTGCGACACCTGCACCACGACCGCTGCAGCCCGGCGAGATACCCAT
CTACACCAACGAGTTCATCGAACACAATCGCAGCACGGAGAATGAGCTGA
GGACGCTGCGCAAGGCCAAGACCGATCTGGAGCAGCAGAACGCTGTGCTG
GAACAGCACGTAGATAATACGAAAGCCGGGTACGCCAAGGTGATGGGCGA
GGTAACTGAGCTCATGGAGGAGAACCAACGCCTGGAGACCTATTTGCGCG
CCTTGCGCCAGAAACTGGTCGCAGCTCTCGGCGGAATCTCGATGCCACCA
CTGGAGCCAAGTGGTCCCAGCGTTGGCAACATTGACAAGTACATCCGGCA
CTTAGCCGGGCTCGTCACTCAGCCAAGCAACGTCACTTTGATTAAGGCAC
GAGAGGCGCTGCGTAAAGTGGACACCAGTAGCTTGCTAAAACCGTGAAAG
CTTTCTAGACCAT
BS09103.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:40:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hmg-2-RA | 1131 | CG9418-PA | 1..1131 | 17..1147 | 5655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:40:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hmg-2-RA | 1347 | CG9418-RA | 99..1229 | 17..1147 | 5655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:40:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21146764..21147490 | 421..1147 | 3635 | 100 | Plus |
2R | 25286936 | 2R | 21146301..21146704 | 17..420 | 2020 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:40:27 has no hits.
BS09103.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:10 Download gff for
BS09103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9418-RA | 1..1131 | 17..1147 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:52 Download gff for
BS09103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9418-RA | 89..1224 | 9..1147 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:02 Download gff for
BS09103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9418-RA | 99..1228 | 17..1146 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:10 Download gff for
BS09103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9418-RA | 89..1224 | 9..1147 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:20 Download gff for
BS09103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hmg-2-RA | 99..1228 | 17..1146 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:20 Download gff for
BS09103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21146301..21146704 | 17..420 | 100 | -> | Plus |
2R | 21146764..21147489 | 421..1146 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:02 Download gff for
BS09103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17033806..17034209 | 17..420 | 100 | -> | Plus |
arm_2R | 17034269..17034994 | 421..1146 | 100 | | Plus |
BS09103.pep Sequence
Translation from 16 to 1146
> BS09103.pep
MTEPTSKTPDAVPESPVSLPIASQSMDTATIEDFDEDKPAKGKKKAKNPK
GRHSDSDIGSELKKLAQRRINVAGAPKMPLNGYVRFMNDRREELRREQPQ
RTALEHTRIIGEEWHQLPEERKLPYIEAAAKDKAIYQEQLQMFLKEHPEI
VANELAKAKKATKLDGSPKEKTPKGESALGKAKKTKAKPVKRQSEDPDDV
PLAKVKRAQTPPPPTPPAAPVQPPPSSVPPATPAPRPLQPGEIPIYTNEF
IEHNRSTENELRTLRKAKTDLEQQNAVLEQHVDNTKAGYAKVMGEVTELM
EENQRLETYLRALRQKLVAALGGISMPPLEPSGPSVGNIDKYIRHLAGLV
TQPSNVTLIKAREALRKVDTSSLLKP*
BS09103.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:41:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hmg-2-PA | 376 | CG9418-PA | 1..376 | 1..376 | 1931 | 100 | Plus |
Ssrp-PA | 723 | CG4817-PA | 482..703 | 3..214 | 161 | 25.3 | Plus |