Clone Sequence Records
BS09111.3prime Sequence
902 bp (899 high quality bases) assembled on 2006-01-24
> BS09111.3prime
ATGGTCTAGAAAGCTTCTACTGTGCTAGCGTACCCATGGGATCCCAGGCA
GGCAGTACGATCGGATCCATGTCGAACACGCGCAACACATCCTCGGGCAC
GTACTTCTTGTCGACGACCACCTCGAATCCAAACTCCCTAAACCAATCGG
CGTTCATCACCAGATAGCCCTTCTCGCCGCGATCCTCACCCCACGAGTTC
TCCACACGCAATTTCTGGGCCACGCCGCTCTTATCCACGGATACGGCGGT
GAAAACCATGGCATGGGTCATGGCCGATTCACCGTAGATCAGGCGGTCTG
CCTTGGAGAATGTCGTTTGTATGTCAATGTCGAAGACCAGCTTAAAATCG
TGGACATCCACATCCTCGATGCCCTGCTTGGAGGCGAATCGCTTGCTAAC
CTCGCAGCCAAACCAAACGGCCTCGCCGGCCTTTAGCGACTTGGTGACAA
CCGCAAGGAGCAGTTCGACGGACTGATTGTTATACAGAACGGGTCGACCG
CCAACCACGTTGCCCAGGCAGTCAACAGTGTATGCCTGGTCATAGCTACT
CGTCGGCCGAGGATCGGTGACCAGGCACACTTTGTCCTCCACGTTGAAAT
GCGGCTTAACATAACGCTCATAGAACTCCAGCGAACTAACGGGTCCGATT
GACTGATAGTTCTTGCTCTTGTCATAGTACTCCCAGGTGAAGGTCTCCGA
GGGTATGCCCAGGCAAATGCCAACCACCTTGTAGATCTCGGCCATTTGCT
CCTGGATCTTGCAGGCGATCTCCTCATCCGTGGGATTCTTCTCCATCAGC
ACGCGCAAATTGCGGGCATACTCCCGTAGCTTGCTCTTCAGTATGGCGTT
CATTCGTAAGCTGGACTCGCAGCTGAAGCTCTCGGGAAAGCATTTCTTTG
GC
BS09111.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1440-PA | 1467 | CG1440-RA | 582..1467 | 902..17 | 4430 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:35:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1440-RD | 2394 | CG1440-RD | 1005..1890 | 902..17 | 4430 | 100 | Minus |
CG1440-RC | 2040 | CG1440-RC | 979..1864 | 902..17 | 4430 | 100 | Minus |
CG1440-RB | 1969 | CG1440-RB | 908..1793 | 902..17 | 4430 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:35:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8439817..8440294 | 831..354 | 2390 | 100 | Minus |
X | 23542271 | X | 8440545..8440760 | 232..17 | 1080 | 100 | Minus |
X | 23542271 | X | 8440361..8440481 | 353..233 | 605 | 100 | Minus |
X | 23542271 | X | 8439686..8439758 | 902..830 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:35:30 has no hits.
BS09111.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:59:35 Download gff for
BS09111.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1440-PA | 582..1467 | 17..902 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:06:06 Download gff for
BS09111.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1440-PA | 582..1467 | 17..902 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:28:43 Download gff for
BS09111.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1440-RB | 908..1793 | 17..902 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:12 Download gff for
BS09111.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1440-RB | 908..1793 | 17..902 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:12 Download gff for
BS09111.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8439686..8439758 | 830..902 | 100 | -> | Minus |
X | 8439819..8440294 | 354..829 | 100 | -> | Minus |
X | 8440361..8440481 | 233..353 | 100 | -> | Minus |
X | 8440545..8440760 | 17..232 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:28:43 Download gff for
BS09111.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8333719..8333791 | 830..902 | 100 | -> | Minus |
arm_X | 8333852..8334327 | 354..829 | 100 | -> | Minus |
arm_X | 8334394..8334514 | 233..353 | 100 | -> | Minus |
arm_X | 8334578..8334793 | 17..232 | 100 | | Minus |
BS09111.5prime Sequence
909 bp (800 high quality bases) assembled on 2006-01-24
> BS09111.5prime
GAAGTTATCAGTCGACATGTCTGACAACAACAGCGGATCCGGAGGAGGTG
GAAGCGGTGGCGGTGGCGCCGGTAACAATAACAGTGCCAATAGTGGTAAG
AACTCGACGCACAGGTTCGCTGAGACCAGTGTGATCACCAATCAATTGTT
GGAAAAATGGCGGAAAAACTTCTACAGCGAACCGAAGAATCTGCTGGCGC
AGAACGTCTGCTCACGCGTTGATCCGTTCGATGTGTGCCTGTCCAGGAAG
GCACTGGAGACCACCAATCATGTGTTCAACTACAAGGTGGAAACGGAGGG
CAAGCCGGTGACCAATCAAAGGAGCTCCGGCCGCTGCTGGCTGTTTGCGG
CCCTCAACTGCATCCGCCTGCCATTCATGAAGAACTACAATCTGGACGAG
TTCGAATTCTCGCAGGCCTTCCTCTTCTACTGGGACAAGATCGAGCGTTG
CAACTACTTTCTCAACAATGTTGTGAAGACGGCACAGCGCGGCGAGAAGG
TTGATGGTCGTCTGGTGTCGTTCCTGCTACTCGATCCCACCTCCGATGGC
GGCCAGTGGGACATGCTGGTCAATCTGATAACCAAACACGGCCTTATGCC
AAAGAAATGCTTTCCCGAGAGCTTCAGCTGCGAGTCCAGCTTACGAATGA
ACGCCATACTGAAGAGCAAGCTACGGGAGTATGCCCGCAATTTGCGCGTG
CTGATGGAGAAGAATCCCACGGATGAGGAGATCGCCTGCAAGATCCAGGA
GCAAATGGCCGAGATCTACAAGGTGGTTGGCATTTGCCTGGGCATACCCT
CGGAGACCTTCACCTGGGAGTACTATGACAAGAGCAAGAACTATCAGTCA
ATCGGACCCGTTAGTTCGCTGGAGTTCTATGAGCGTTATGTTAAGCCGCA
TTTCAACGT
BS09111.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1440-PA | 1467 | CG1440-RA | 1..893 | 17..909 | 4465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:10:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1440-RA | 1877 | CG1440-RA | 235..1127 | 17..909 | 4465 | 100 | Plus |
CG1440-RB | 1969 | CG1440-RB | 330..1219 | 20..909 | 4450 | 100 | Plus |
CG1440-RD | 2394 | CG1440-RD | 428..1316 | 21..909 | 4445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:10:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8439109..8439758 | 21..670 | 3250 | 100 | Plus |
X | 23542271 | X | 8439817..8440057 | 669..909 | 1205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:10:04 has no hits.
BS09111.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:59:36 Download gff for
BS09111.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1440-PA | 1..893 | 17..909 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:06:07 Download gff for
BS09111.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1440-PA | 1..893 | 17..909 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:45:57 Download gff for
BS09111.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1440-RA | 204..1104 | 9..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:01:59 Download gff for
BS09111.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1440-RA | 227..1127 | 9..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:01:59 Download gff for
BS09111.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8439106..8439758 | 16..670 | 99 | -> | Plus |
X | 8439819..8440057 | 671..909 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:45:57 Download gff for
BS09111.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8333139..8333791 | 16..670 | 99 | -> | Plus |
arm_X | 8333852..8334090 | 671..909 | 100 | | Plus |
BS09111.complete Sequence
1499 bp (1499 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636353
> BS09111.complete
GAAGTTATCAGTCGACATGTCTGACAACAACAGCGGATCCGGAGGAGGTG
GAAGCGGTGGCGGTGGCGCCGGTAACAATAACAGTGCCAATAGTGGTAAG
AACTCGACGCACAGGTTCGCTGAGACCAGTGTGATCACCAATCAATTGTT
GGAAAAATGGCGGAAAAACTTCTACAGCGAACCGAAGAATCTGCTGGCGC
AGAACGTCTGCTCACGCGTTGATCCGTTCGATGTGTGCCTGTCCAGGAAG
GCACTGGAGACCACCAATCATGTGTTCAACTACAAGGTGGAAACGGAGGG
CAAGCCGGTGACCAATCAAAGGAGCTCCGGCCGCTGCTGGCTGTTTGCGG
CCCTCAACTGCATCCGCCTGCCATTCATGAAGAACTACAATCTGGACGAG
TTCGAATTCTCGCAGGCCTTCCTCTTCTACTGGGACAAGATCGAGCGTTG
CAACTACTTTCTCAACAATGTTGTGAAGACGGCACAGCGCGGCGAGAAGG
TTGATGGTCGTCTGGTGTCGTTCCTGCTACTCGATCCCACCTCCGATGGC
GGCCAGTGGGACATGCTGGTCAATCTGATAACCAAACACGGCCTTATGCC
AAAGAAATGCTTTCCCGAGAGCTTCAGCTGCGAGTCCAGCTTACGAATGA
ACGCCATACTGAAGAGCAAGCTACGGGAGTATGCCCGCAATTTGCGCGTG
CTGATGGAGAAGAATCCCACGGATGAGGAGATCGCCTGCAAGATCCAGGA
GCAAATGGCCGAGATCTACAAGGTGGTTGGCATTTGCCTGGGCATACCCT
CGGAGACCTTCACCTGGGAGTACTATGACAAGAGCAAGAACTATCAGTCA
ATCGGACCCGTTAGTTCGCTGGAGTTCTATGAGCGTTATGTTAAGCCGCA
TTTCAACGTGGAGGACAAAGTGTGCCTGGTCACCGATCCTCGGCCGACGA
GTAGCTATGACCAGGCATACACTGTTGACTGCCTGGGCAACGTGGTTGGC
GGTCGACCCGTTCTGTATAACAATCAGTCCGTCGAACTGCTCCTTGCGGT
TGTCACCAAGTCGCTAAAGGCCGGCGAGGCCGTTTGGTTTGGCTGCGAGG
TTAGCAAGCGATTCGCCTCCAAGCAGGGCATCGAGGATGTGGATGTCCAC
GATTTTAAGCTGGTCTTCGACATTGACATACAAACGACATTCTCCAAGGC
AGACCGCCTGATCTACGGTGAATCGGCCATGACCCATGCCATGGTTTTCA
CCGCCGTATCCGTGGATAAGAGCGGCGTGGCCCAGAAATTGCGTGTGGAG
AACTCGTGGGGTGAGGATCGCGGCGAGAAGGGCTATCTGGTGATGAACGC
CGATTGGTTTAGGGAGTTTGGATTCGAGGTGGTCGTCGACAAGAAGTACG
TGCCCGAGGATGTGTTGCGCGTGTTCGACATGGATCCGATCGTACTGCCT
GCCTGGGATCCCATGGGTACGCTAGCACAGTAGAAGCTTTCTAGACCAT
BS09111.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:07:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1440-RA | 1467 | CG1440-PA | 1..1467 | 17..1483 | 7335 | 100 | Plus |
CG1440-RD | 1656 | CG1440-PD | 194..1656 | 21..1483 | 7315 | 100 | Plus |
CG1440-RC | 1536 | CG1440-PC | 74..1536 | 21..1483 | 7315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1440-RA | 1877 | CG1440-RA | 235..1701 | 17..1483 | 7335 | 100 | Plus |
CG1440-RB | 1969 | CG1440-RB | 330..1793 | 20..1483 | 7320 | 100 | Plus |
CG1440-RD | 2394 | CG1440-RD | 428..1890 | 21..1483 | 7315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8439109..8439758 | 21..670 | 3250 | 100 | Plus |
X | 23542271 | X | 8439817..8440294 | 669..1146 | 2390 | 100 | Plus |
X | 23542271 | X | 8440545..8440760 | 1268..1483 | 1080 | 100 | Plus |
X | 23542271 | X | 8440361..8440481 | 1147..1267 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:07:56 has no hits.
BS09111.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:11 Download gff for
BS09111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1440-RA | 1..1467 | 17..1483 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:54 Download gff for
BS09111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1440-RA | 204..1678 | 9..1483 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:43 Download gff for
BS09111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1440-RA | 212..1678 | 17..1483 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:12 Download gff for
BS09111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1440-RA | 204..1678 | 9..1483 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:29 Download gff for
BS09111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1440-RA | 235..1701 | 17..1483 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:29 Download gff for
BS09111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8440361..8440481 | 1147..1267 | 100 | -> | Plus |
X | 8440545..8440760 | 1268..1483 | 100 | | Plus |
X | 8439107..8439758 | 17..670 | 99 | -> | Plus |
X | 8439819..8440294 | 671..1146 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:43 Download gff for
BS09111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8333140..8333791 | 17..670 | 99 | -> | Plus |
arm_X | 8333852..8334327 | 671..1146 | 100 | -> | Plus |
arm_X | 8334394..8334514 | 1147..1267 | 100 | -> | Plus |
arm_X | 8334578..8334793 | 1268..1483 | 100 | | Plus |
BS09111.pep Sequence
Translation from 16 to 1482
> BS09111.pep
MSDNNSGSGGGGSGGGGAGNNNSANSGKNSTHRFAETSVITNQLLEKWRK
NFYSEPKNLLAQNVCSRVDPFDVCLSRKALETTNHVFNYKVETEGKPVTN
QRSSGRCWLFAALNCIRLPFMKNYNLDEFEFSQAFLFYWDKIERCNYFLN
NVVKTAQRGEKVDGRLVSFLLLDPTSDGGQWDMLVNLITKHGLMPKKCFP
ESFSCESSLRMNAILKSKLREYARNLRVLMEKNPTDEEIACKIQEQMAEI
YKVVGICLGIPSETFTWEYYDKSKNYQSIGPVSSLEFYERYVKPHFNVED
KVCLVTDPRPTSSYDQAYTVDCLGNVVGGRPVLYNNQSVELLLAVVTKSL
KAGEAVWFGCEVSKRFASKQGIEDVDVHDFKLVFDIDIQTTFSKADRLIY
GESAMTHAMVFTAVSVDKSGVAQKLRVENSWGEDRGEKGYLVMNADWFRE
FGFEVVVDKKYVPEDVLRVFDMDPIVLPAWDPMGTLAQ*
BS09111.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:41:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1440-PA | 488 | CG1440-PA | 1..488 | 1..488 | 2589 | 100 | Plus |
CG1440-PD | 551 | CG1440-PD | 65..551 | 2..488 | 2581 | 99.8 | Plus |
CG1440-PC | 511 | CG1440-PC | 25..511 | 2..488 | 2581 | 99.8 | Plus |
CG1440-PB | 368 | CG1440-PB | 1..368 | 121..488 | 1944 | 100 | Plus |
CG13423-PA | 476 | CG13423-PA | 4..474 | 39..486 | 725 | 35.4 | Plus |