Clone BS09111 Report

Search the DGRC for BS09111

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:91
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG1440-RA
Protein status:BS09111.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09111.3prime Sequence

902 bp (899 high quality bases) assembled on 2006-01-24

> BS09111.3prime
ATGGTCTAGAAAGCTTCTACTGTGCTAGCGTACCCATGGGATCCCAGGCA
GGCAGTACGATCGGATCCATGTCGAACACGCGCAACACATCCTCGGGCAC
GTACTTCTTGTCGACGACCACCTCGAATCCAAACTCCCTAAACCAATCGG
CGTTCATCACCAGATAGCCCTTCTCGCCGCGATCCTCACCCCACGAGTTC
TCCACACGCAATTTCTGGGCCACGCCGCTCTTATCCACGGATACGGCGGT
GAAAACCATGGCATGGGTCATGGCCGATTCACCGTAGATCAGGCGGTCTG
CCTTGGAGAATGTCGTTTGTATGTCAATGTCGAAGACCAGCTTAAAATCG
TGGACATCCACATCCTCGATGCCCTGCTTGGAGGCGAATCGCTTGCTAAC
CTCGCAGCCAAACCAAACGGCCTCGCCGGCCTTTAGCGACTTGGTGACAA
CCGCAAGGAGCAGTTCGACGGACTGATTGTTATACAGAACGGGTCGACCG
CCAACCACGTTGCCCAGGCAGTCAACAGTGTATGCCTGGTCATAGCTACT
CGTCGGCCGAGGATCGGTGACCAGGCACACTTTGTCCTCCACGTTGAAAT
GCGGCTTAACATAACGCTCATAGAACTCCAGCGAACTAACGGGTCCGATT
GACTGATAGTTCTTGCTCTTGTCATAGTACTCCCAGGTGAAGGTCTCCGA
GGGTATGCCCAGGCAAATGCCAACCACCTTGTAGATCTCGGCCATTTGCT
CCTGGATCTTGCAGGCGATCTCCTCATCCGTGGGATTCTTCTCCATCAGC
ACGCGCAAATTGCGGGCATACTCCCGTAGCTTGCTCTTCAGTATGGCGTT
CATTCGTAAGCTGGACTCGCAGCTGAAGCTCTCGGGAAAGCATTTCTTTG
GC

BS09111.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1440-PA 1467 CG1440-RA 582..1467 902..17 4430 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:35:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1440-RD 2394 CG1440-RD 1005..1890 902..17 4430 100 Minus
CG1440-RC 2040 CG1440-RC 979..1864 902..17 4430 100 Minus
CG1440-RB 1969 CG1440-RB 908..1793 902..17 4430 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:35:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8439817..8440294 831..354 2390 100 Minus
X 23542271 X 8440545..8440760 232..17 1080 100 Minus
X 23542271 X 8440361..8440481 353..233 605 100 Minus
X 23542271 X 8439686..8439758 902..830 365 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:35:30 has no hits.

BS09111.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:59:35 Download gff for BS09111.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1440-PA 582..1467 17..902 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:06:06 Download gff for BS09111.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1440-PA 582..1467 17..902 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:28:43 Download gff for BS09111.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1440-RB 908..1793 17..902 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:12 Download gff for BS09111.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1440-RB 908..1793 17..902 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:12 Download gff for BS09111.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8439686..8439758 830..902 100 -> Minus
X 8439819..8440294 354..829 100 -> Minus
X 8440361..8440481 233..353 100 -> Minus
X 8440545..8440760 17..232 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:28:43 Download gff for BS09111.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8333719..8333791 830..902 100 -> Minus
arm_X 8333852..8334327 354..829 100 -> Minus
arm_X 8334394..8334514 233..353 100 -> Minus
arm_X 8334578..8334793 17..232 100   Minus

BS09111.5prime Sequence

909 bp (800 high quality bases) assembled on 2006-01-24

> BS09111.5prime
GAAGTTATCAGTCGACATGTCTGACAACAACAGCGGATCCGGAGGAGGTG
GAAGCGGTGGCGGTGGCGCCGGTAACAATAACAGTGCCAATAGTGGTAAG
AACTCGACGCACAGGTTCGCTGAGACCAGTGTGATCACCAATCAATTGTT
GGAAAAATGGCGGAAAAACTTCTACAGCGAACCGAAGAATCTGCTGGCGC
AGAACGTCTGCTCACGCGTTGATCCGTTCGATGTGTGCCTGTCCAGGAAG
GCACTGGAGACCACCAATCATGTGTTCAACTACAAGGTGGAAACGGAGGG
CAAGCCGGTGACCAATCAAAGGAGCTCCGGCCGCTGCTGGCTGTTTGCGG
CCCTCAACTGCATCCGCCTGCCATTCATGAAGAACTACAATCTGGACGAG
TTCGAATTCTCGCAGGCCTTCCTCTTCTACTGGGACAAGATCGAGCGTTG
CAACTACTTTCTCAACAATGTTGTGAAGACGGCACAGCGCGGCGAGAAGG
TTGATGGTCGTCTGGTGTCGTTCCTGCTACTCGATCCCACCTCCGATGGC
GGCCAGTGGGACATGCTGGTCAATCTGATAACCAAACACGGCCTTATGCC
AAAGAAATGCTTTCCCGAGAGCTTCAGCTGCGAGTCCAGCTTACGAATGA
ACGCCATACTGAAGAGCAAGCTACGGGAGTATGCCCGCAATTTGCGCGTG
CTGATGGAGAAGAATCCCACGGATGAGGAGATCGCCTGCAAGATCCAGGA
GCAAATGGCCGAGATCTACAAGGTGGTTGGCATTTGCCTGGGCATACCCT
CGGAGACCTTCACCTGGGAGTACTATGACAAGAGCAAGAACTATCAGTCA
ATCGGACCCGTTAGTTCGCTGGAGTTCTATGAGCGTTATGTTAAGCCGCA
TTTCAACGT

BS09111.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1440-PA 1467 CG1440-RA 1..893 17..909 4465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG1440-RA 1877 CG1440-RA 235..1127 17..909 4465 100 Plus
CG1440-RB 1969 CG1440-RB 330..1219 20..909 4450 100 Plus
CG1440-RD 2394 CG1440-RD 428..1316 21..909 4445 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8439109..8439758 21..670 3250 100 Plus
X 23542271 X 8439817..8440057 669..909 1205 100 Plus
Blast to na_te.dros performed on 2015-02-13 09:10:04 has no hits.

BS09111.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:59:36 Download gff for BS09111.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1440-PA 1..893 17..909 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:06:07 Download gff for BS09111.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1440-PA 1..893 17..909 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:45:57 Download gff for BS09111.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1440-RA 204..1104 9..909 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:01:59 Download gff for BS09111.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1440-RA 227..1127 9..909 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:01:59 Download gff for BS09111.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8439106..8439758 16..670 99 -> Plus
X 8439819..8440057 671..909 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:45:57 Download gff for BS09111.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8333139..8333791 16..670 99 -> Plus
arm_X 8333852..8334090 671..909 100   Plus

BS09111.complete Sequence

1499 bp (1499 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636353

> BS09111.complete
GAAGTTATCAGTCGACATGTCTGACAACAACAGCGGATCCGGAGGAGGTG
GAAGCGGTGGCGGTGGCGCCGGTAACAATAACAGTGCCAATAGTGGTAAG
AACTCGACGCACAGGTTCGCTGAGACCAGTGTGATCACCAATCAATTGTT
GGAAAAATGGCGGAAAAACTTCTACAGCGAACCGAAGAATCTGCTGGCGC
AGAACGTCTGCTCACGCGTTGATCCGTTCGATGTGTGCCTGTCCAGGAAG
GCACTGGAGACCACCAATCATGTGTTCAACTACAAGGTGGAAACGGAGGG
CAAGCCGGTGACCAATCAAAGGAGCTCCGGCCGCTGCTGGCTGTTTGCGG
CCCTCAACTGCATCCGCCTGCCATTCATGAAGAACTACAATCTGGACGAG
TTCGAATTCTCGCAGGCCTTCCTCTTCTACTGGGACAAGATCGAGCGTTG
CAACTACTTTCTCAACAATGTTGTGAAGACGGCACAGCGCGGCGAGAAGG
TTGATGGTCGTCTGGTGTCGTTCCTGCTACTCGATCCCACCTCCGATGGC
GGCCAGTGGGACATGCTGGTCAATCTGATAACCAAACACGGCCTTATGCC
AAAGAAATGCTTTCCCGAGAGCTTCAGCTGCGAGTCCAGCTTACGAATGA
ACGCCATACTGAAGAGCAAGCTACGGGAGTATGCCCGCAATTTGCGCGTG
CTGATGGAGAAGAATCCCACGGATGAGGAGATCGCCTGCAAGATCCAGGA
GCAAATGGCCGAGATCTACAAGGTGGTTGGCATTTGCCTGGGCATACCCT
CGGAGACCTTCACCTGGGAGTACTATGACAAGAGCAAGAACTATCAGTCA
ATCGGACCCGTTAGTTCGCTGGAGTTCTATGAGCGTTATGTTAAGCCGCA
TTTCAACGTGGAGGACAAAGTGTGCCTGGTCACCGATCCTCGGCCGACGA
GTAGCTATGACCAGGCATACACTGTTGACTGCCTGGGCAACGTGGTTGGC
GGTCGACCCGTTCTGTATAACAATCAGTCCGTCGAACTGCTCCTTGCGGT
TGTCACCAAGTCGCTAAAGGCCGGCGAGGCCGTTTGGTTTGGCTGCGAGG
TTAGCAAGCGATTCGCCTCCAAGCAGGGCATCGAGGATGTGGATGTCCAC
GATTTTAAGCTGGTCTTCGACATTGACATACAAACGACATTCTCCAAGGC
AGACCGCCTGATCTACGGTGAATCGGCCATGACCCATGCCATGGTTTTCA
CCGCCGTATCCGTGGATAAGAGCGGCGTGGCCCAGAAATTGCGTGTGGAG
AACTCGTGGGGTGAGGATCGCGGCGAGAAGGGCTATCTGGTGATGAACGC
CGATTGGTTTAGGGAGTTTGGATTCGAGGTGGTCGTCGACAAGAAGTACG
TGCCCGAGGATGTGTTGCGCGTGTTCGACATGGATCCGATCGTACTGCCT
GCCTGGGATCCCATGGGTACGCTAGCACAGTAGAAGCTTTCTAGACCAT

BS09111.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG1440-RA 1467 CG1440-PA 1..1467 17..1483 7335 100 Plus
CG1440-RD 1656 CG1440-PD 194..1656 21..1483 7315 100 Plus
CG1440-RC 1536 CG1440-PC 74..1536 21..1483 7315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG1440-RA 1877 CG1440-RA 235..1701 17..1483 7335 100 Plus
CG1440-RB 1969 CG1440-RB 330..1793 20..1483 7320 100 Plus
CG1440-RD 2394 CG1440-RD 428..1890 21..1483 7315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8439109..8439758 21..670 3250 100 Plus
X 23542271 X 8439817..8440294 669..1146 2390 100 Plus
X 23542271 X 8440545..8440760 1268..1483 1080 100 Plus
X 23542271 X 8440361..8440481 1147..1267 605 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:07:56 has no hits.

BS09111.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:11 Download gff for BS09111.complete
Subject Subject Range Query Range Percent Splice Strand
CG1440-RA 1..1467 17..1483 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:54 Download gff for BS09111.complete
Subject Subject Range Query Range Percent Splice Strand
CG1440-RA 204..1678 9..1483 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:43 Download gff for BS09111.complete
Subject Subject Range Query Range Percent Splice Strand
CG1440-RA 212..1678 17..1483 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:12 Download gff for BS09111.complete
Subject Subject Range Query Range Percent Splice Strand
CG1440-RA 204..1678 9..1483 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:29 Download gff for BS09111.complete
Subject Subject Range Query Range Percent Splice Strand
CG1440-RA 235..1701 17..1483 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:29 Download gff for BS09111.complete
Subject Subject Range Query Range Percent Splice Strand
X 8440361..8440481 1147..1267 100 -> Plus
X 8440545..8440760 1268..1483 100   Plus
X 8439107..8439758 17..670 99 -> Plus
X 8439819..8440294 671..1146 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:43 Download gff for BS09111.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8333140..8333791 17..670 99 -> Plus
arm_X 8333852..8334327 671..1146 100 -> Plus
arm_X 8334394..8334514 1147..1267 100 -> Plus
arm_X 8334578..8334793 1268..1483 100   Plus

BS09111.pep Sequence

Translation from 16 to 1482

> BS09111.pep
MSDNNSGSGGGGSGGGGAGNNNSANSGKNSTHRFAETSVITNQLLEKWRK
NFYSEPKNLLAQNVCSRVDPFDVCLSRKALETTNHVFNYKVETEGKPVTN
QRSSGRCWLFAALNCIRLPFMKNYNLDEFEFSQAFLFYWDKIERCNYFLN
NVVKTAQRGEKVDGRLVSFLLLDPTSDGGQWDMLVNLITKHGLMPKKCFP
ESFSCESSLRMNAILKSKLREYARNLRVLMEKNPTDEEIACKIQEQMAEI
YKVVGICLGIPSETFTWEYYDKSKNYQSIGPVSSLEFYERYVKPHFNVED
KVCLVTDPRPTSSYDQAYTVDCLGNVVGGRPVLYNNQSVELLLAVVTKSL
KAGEAVWFGCEVSKRFASKQGIEDVDVHDFKLVFDIDIQTTFSKADRLIY
GESAMTHAMVFTAVSVDKSGVAQKLRVENSWGEDRGEKGYLVMNADWFRE
FGFEVVVDKKYVPEDVLRVFDMDPIVLPAWDPMGTLAQ*

BS09111.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1440-PA 488 CG1440-PA 1..488 1..488 2589 100 Plus
CG1440-PD 551 CG1440-PD 65..551 2..488 2581 99.8 Plus
CG1440-PC 511 CG1440-PC 25..511 2..488 2581 99.8 Plus
CG1440-PB 368 CG1440-PB 1..368 121..488 1944 100 Plus
CG13423-PA 476 CG13423-PA 4..474 39..486 725 35.4 Plus