Clone Sequence Records
BS09114.3prime Sequence
648 bp (647 high quality bases) assembled on 2006-01-24
> BS09114.3prime
ATGGTCTAGAAAGCTTCTACTTGTTGTTCTGCGCCATCACATGTGGCGAT
TTGTAGAAGTTTTGCACGAACTCCGACAGGCTGTAGACCGATCCTGGACC
TTTTCCTGCACTCATGCAGATAAAGTCTCCTAGACAGTGCATATTCGAAT
TGGAGAGTATAGGTGGATAGGAGGGCGGTGGCTTGATCCAACTGCCATCC
GGCCGACGCATGTGACGCCGATCCGACGAGAACTCAATGAGATATGTGTC
TGCGGGTATGACTCTAAAGAATCTGTGGTGCTCCGGACGCAGGGCCAGAT
CGGAGCGGAACGTCTCCGTCACGTACTTGTGAAAATATGTGGGAAAGGGC
AGTGTGGTGTCCAGATCGAACACCAAACAGCGATTCAGCAAGGGATTGTG
TATGAAGAAGACGTGGTAGTCCCATATCACAACTTGATCGTCGCCGCGTC
CTGCTTTCTGGCGCCACAGGGGCACGGTGCGACCCTCGTTGGAAACGAAG
ACGGCGTAGCACTTGGACAGCTCCTCCGGCCGCGTCCGCTTCACCTGCTC
GCAGAGCTTCCACACGTTCTCCTCGCAGTAACAGGACACGTAGGAGCAGT
CCGATATTTTAGGGAAGAGGAAGTCCGTGGTCATGTCGACTGATAACT
BS09114.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8253-PA | 618 | tun-RA | 1..618 | 634..17 | 3090 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:18:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tun-RC | 3446 | CG8253-RC | 1043..1661 | 634..16 | 3095 | 100 | Minus |
tun-RB | 4110 | CG8253-RB | 1043..1661 | 634..16 | 3095 | 100 | Minus |
tun-RD | 3074 | CG8253-RD | 2063..2681 | 634..16 | 3095 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 05:17:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15852387..15852542 | 576..421 | 780 | 100 | Minus |
2R | 25286936 | 2R | 15852670..15852819 | 422..273 | 750 | 100 | Minus |
2R | 25286936 | 2R | 15853065..15853196 | 147..16 | 660 | 100 | Minus |
2R | 25286936 | 2R | 15852878..15853006 | 276..148 | 645 | 100 | Minus |
2R | 25286936 | 2R | 15849621..15849679 | 634..576 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 05:18:00 has no hits.
BS09114.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:59:37 Download gff for
BS09114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8253-PA | 1..618 | 17..634 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:06:08 Download gff for
BS09114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8253-PA | 1..618 | 17..634 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:14:28 Download gff for
BS09114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tun-RD | 2056..2681 | 16..642 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:54:27 Download gff for
BS09114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tun-RD | 2056..2681 | 16..642 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:54:27 Download gff for
BS09114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15849614..15849679 | 576..642 | 95 | -> | Minus |
2R | 15852388..15852541 | 422..575 | 100 | -> | Minus |
2R | 15852671..15852819 | 273..421 | 100 | -> | Minus |
2R | 15852882..15853006 | 148..272 | 100 | -> | Minus |
2R | 15853065..15853196 | 16..147 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:14:28 Download gff for
BS09114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11737119..11737184 | 576..642 | 95 | -> | Minus |
arm_2R | 11739893..11740046 | 422..575 | 100 | -> | Minus |
arm_2R | 11740176..11740324 | 273..421 | 100 | -> | Minus |
arm_2R | 11740387..11740511 | 148..272 | 100 | -> | Minus |
arm_2R | 11740570..11740701 | 16..147 | 100 | | Minus |
BS09114.5prime Sequence
648 bp (647 high quality bases) assembled on 2006-01-24
> BS09114.5prime
GAAGTTATCAGTCGACATGACCACGGACTTCCTCTTCCCTAAAATATCGG
ACTGCTCCTACGTGTCCTGTTACTGCGAGGAGAACGTGTGGAAGCTCTGC
GAGCAGGTGAAGCGGACGCGGCCGGAGGAGCTGTCCAAGTGCTACGCCGT
CTTCGTTTCCAACGAGGGTCGCACCGTGCCCCTGTGGCGCCAGAAAGCAG
GACGCGGCGACGATCAAGTTGTGATATGGGACTACCACGTCTTCTTCATA
CACAATCCCTTGCTGAATCGCTGTTTGGTGTTCGATCTGGACACCACACT
GCCCTTTCCCACATATTTTCACAAGTACGTGACGGAGACGTTCCGCTCCG
ATCTGGCCCTGCGTCCGGAGCACCACAGATTCTTTAGAGTCATACCCGCA
GACACATATCTCATTGAGTTCTCGTCGGATCGGCGTCACATGCGTCGGCC
GGATGGCAGTTGGATCAAGCCACCGCCCTCCTATCCACCTATACTCTCCA
ATTCGAATATGCACTGTCTAGGAGACTTTATCTGCATGAGTGCAGGAAAA
GGTCCAGGATCGGTCTACAGCCTGTCGGAGTTCGTGCAAAACTTCTACAA
ATCGCCACATGTGATGGCGCAGAACAACAAGTAGAAGCTTTCTAGACC
BS09114.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8253-PA | 618 | tun-RA | 1..618 | 17..634 | 3090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:29:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tun-RC | 3446 | CG8253-RC | 1043..1661 | 17..635 | 3095 | 100 | Plus |
tun-RB | 4110 | CG8253-RB | 1043..1661 | 17..635 | 3095 | 100 | Plus |
tun-RD | 3074 | CG8253-RD | 2063..2681 | 17..635 | 3095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:29:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15852387..15852542 | 75..230 | 780 | 100 | Plus |
2R | 25286936 | 2R | 15852670..15852819 | 229..378 | 750 | 100 | Plus |
2R | 25286936 | 2R | 15853065..15853196 | 504..635 | 660 | 100 | Plus |
2R | 25286936 | 2R | 15852878..15853006 | 375..503 | 645 | 100 | Plus |
2R | 25286936 | 2R | 15849621..15849679 | 17..75 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 09:29:48 has no hits.
BS09114.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:59:38 Download gff for
BS09114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8253-PA | 1..618 | 17..634 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:06:10 Download gff for
BS09114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8253-PA | 1..618 | 17..634 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:20:00 Download gff for
BS09114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tun-RD | 2056..2681 | 9..635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:49:55 Download gff for
BS09114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tun-RD | 2056..2681 | 9..635 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:49:55 Download gff for
BS09114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15853065..15853196 | 504..635 | 100 | | Plus |
2R | 15852388..15852541 | 76..229 | 100 | -> | Plus |
2R | 15852671..15852819 | 230..378 | 100 | -> | Plus |
2R | 15852882..15853006 | 379..503 | 100 | -> | Plus |
2R | 15849614..15849679 | 9..75 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:20:00 Download gff for
BS09114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11739893..11740046 | 76..229 | 100 | -> | Plus |
arm_2R | 11740176..11740324 | 230..378 | 100 | -> | Plus |
arm_2R | 11740387..11740511 | 379..503 | 100 | -> | Plus |
arm_2R | 11740570..11740701 | 504..635 | 100 | | Plus |
arm_2R | 11737119..11737184 | 9..75 | 95 | -> | Plus |
BS09114.complete Sequence
650 bp (650 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636354
> BS09114.complete
GAAGTTATCAGTCGACATGACCACGGACTTCCTCTTCCCTAAAATATCGG
ACTGCTCCTACGTGTCCTGTTACTGCGAGGAGAACGTGTGGAAGCTCTGC
GAGCAGGTGAAGCGGACGCGGCCGGAGGAGCTGTCCAAGTGCTACGCCGT
CTTCGTTTCCAACGAGGGTCGCACCGTGCCCCTGTGGCGCCAGAAAGCAG
GACGCGGCGACGATCAAGTTGTGATATGGGACTACCACGTCTTCTTCATA
CACAATCCCTTGCTGAATCGCTGTTTGGTGTTCGATCTGGACACCACACT
GCCCTTTCCCACATATTTTCACAAGTACGTGACGGAGACGTTCCGCTCCG
ATCTGGCCCTGCGTCCGGAGCACCACAGATTCTTTAGAGTCATACCCGCA
GACACATATCTCATTGAGTTCTCGTCGGATCGGCGTCACATGCGTCGGCC
GGATGGCAGTTGGATCAAGCCACCGCCCTCCTATCCACCTATACTCTCCA
ATTCGAATATGCACTGTCTAGGAGACTTTATCTGCATGAGTGCAGGAAAA
GGTCCAGGATCGGTCTACAGCCTGTCGGAGTTCGTGCAAAACTTCTACAA
ATCGCCACATGTGATGGCGCAGAACAACAAGTAGAAGCTTTCTAGACCAT
BS09114.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:19:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tun-RC | 618 | CG8253-PC | 1..618 | 17..634 | 3090 | 100 | Plus |
tun-RB | 618 | CG8253-PB | 1..618 | 17..634 | 3090 | 100 | Plus |
tun-RD | 618 | CG8253-PD | 1..618 | 17..634 | 3090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:19:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tun-RC | 3446 | CG8253-RC | 1043..1661 | 17..635 | 3095 | 100 | Plus |
tun-RB | 4110 | CG8253-RB | 1043..1661 | 17..635 | 3095 | 100 | Plus |
tun-RD | 3074 | CG8253-RD | 2063..2681 | 17..635 | 3095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:19:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15852387..15852542 | 75..230 | 780 | 100 | Plus |
2R | 25286936 | 2R | 15852670..15852819 | 229..378 | 750 | 100 | Plus |
2R | 25286936 | 2R | 15853065..15853196 | 504..635 | 660 | 100 | Plus |
2R | 25286936 | 2R | 15852878..15853006 | 375..503 | 645 | 100 | Plus |
2R | 25286936 | 2R | 15849621..15849679 | 17..75 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:19:08 has no hits.
BS09114.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:44 Download gff for
BS09114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tun-RA | 1..618 | 17..634 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:26:58 Download gff for
BS09114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tun-RA | 1009..1634 | 9..635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:52 Download gff for
BS09114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tun-RD | 2063..2680 | 17..634 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:44 Download gff for
BS09114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tun-RA | 1009..1634 | 9..635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:21 Download gff for
BS09114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tun-RD | 2063..2680 | 17..634 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:21 Download gff for
BS09114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15852388..15852541 | 76..229 | 100 | -> | Plus |
2R | 15852671..15852819 | 230..378 | 100 | -> | Plus |
2R | 15852882..15853006 | 379..503 | 100 | -> | Plus |
2R | 15853065..15853195 | 504..634 | 100 | | Plus |
2R | 15849621..15849679 | 17..75 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:52 Download gff for
BS09114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11737126..11737184 | 17..75 | 100 | -> | Plus |
arm_2R | 11739893..11740046 | 76..229 | 100 | -> | Plus |
arm_2R | 11740176..11740324 | 230..378 | 100 | -> | Plus |
arm_2R | 11740387..11740511 | 379..503 | 100 | -> | Plus |
arm_2R | 11740570..11740700 | 504..634 | 100 | | Plus |
BS09114.pep Sequence
Translation from 16 to 633
> BS09114.pep
MTTDFLFPKISDCSYVSCYCEENVWKLCEQVKRTRPEELSKCYAVFVSNE
GRTVPLWRQKAGRGDDQVVIWDYHVFFIHNPLLNRCLVFDLDTTLPFPTY
FHKYVTETFRSDLALRPEHHRFFRVIPADTYLIEFSSDRRHMRRPDGSWI
KPPPSYPPILSNSNMHCLGDFICMSAGKGPGSVYSLSEFVQNFYKSPHVM
AQNNK*
BS09114.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:24:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tun-PC | 205 | CG8253-PC | 1..205 | 1..205 | 1140 | 100 | Plus |
tun-PB | 205 | CG8253-PB | 1..205 | 1..205 | 1140 | 100 | Plus |
tun-PD | 205 | CG8253-PD | 1..205 | 1..205 | 1140 | 100 | Plus |
tun-PA | 205 | CG8253-PA | 1..205 | 1..205 | 1140 | 100 | Plus |