Clone BS09114 Report

Search the DGRC for BS09114

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:91
Well:14
Vector:pDNR-Dual
Associated Gene/Transcripttun-RA
Protein status:BS09114.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09114.3prime Sequence

648 bp (647 high quality bases) assembled on 2006-01-24

> BS09114.3prime
ATGGTCTAGAAAGCTTCTACTTGTTGTTCTGCGCCATCACATGTGGCGAT
TTGTAGAAGTTTTGCACGAACTCCGACAGGCTGTAGACCGATCCTGGACC
TTTTCCTGCACTCATGCAGATAAAGTCTCCTAGACAGTGCATATTCGAAT
TGGAGAGTATAGGTGGATAGGAGGGCGGTGGCTTGATCCAACTGCCATCC
GGCCGACGCATGTGACGCCGATCCGACGAGAACTCAATGAGATATGTGTC
TGCGGGTATGACTCTAAAGAATCTGTGGTGCTCCGGACGCAGGGCCAGAT
CGGAGCGGAACGTCTCCGTCACGTACTTGTGAAAATATGTGGGAAAGGGC
AGTGTGGTGTCCAGATCGAACACCAAACAGCGATTCAGCAAGGGATTGTG
TATGAAGAAGACGTGGTAGTCCCATATCACAACTTGATCGTCGCCGCGTC
CTGCTTTCTGGCGCCACAGGGGCACGGTGCGACCCTCGTTGGAAACGAAG
ACGGCGTAGCACTTGGACAGCTCCTCCGGCCGCGTCCGCTTCACCTGCTC
GCAGAGCTTCCACACGTTCTCCTCGCAGTAACAGGACACGTAGGAGCAGT
CCGATATTTTAGGGAAGAGGAAGTCCGTGGTCATGTCGACTGATAACT

BS09114.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8253-PA 618 tun-RA 1..618 634..17 3090 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:18:03
Subject Length Description Subject Range Query Range Score Percent Strand
tun-RC 3446 CG8253-RC 1043..1661 634..16 3095 100 Minus
tun-RB 4110 CG8253-RB 1043..1661 634..16 3095 100 Minus
tun-RD 3074 CG8253-RD 2063..2681 634..16 3095 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 05:17:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15852387..15852542 576..421 780 100 Minus
2R 25286936 2R 15852670..15852819 422..273 750 100 Minus
2R 25286936 2R 15853065..15853196 147..16 660 100 Minus
2R 25286936 2R 15852878..15853006 276..148 645 100 Minus
2R 25286936 2R 15849621..15849679 634..576 295 100 Minus
Blast to na_te.dros performed on 2015-02-01 05:18:00 has no hits.

BS09114.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:59:37 Download gff for BS09114.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8253-PA 1..618 17..634 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:06:08 Download gff for BS09114.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8253-PA 1..618 17..634 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:14:28 Download gff for BS09114.3prime
Subject Subject Range Query Range Percent Splice Strand
tun-RD 2056..2681 16..642 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:54:27 Download gff for BS09114.3prime
Subject Subject Range Query Range Percent Splice Strand
tun-RD 2056..2681 16..642 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:54:27 Download gff for BS09114.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15849614..15849679 576..642 95 -> Minus
2R 15852388..15852541 422..575 100 -> Minus
2R 15852671..15852819 273..421 100 -> Minus
2R 15852882..15853006 148..272 100 -> Minus
2R 15853065..15853196 16..147 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:14:28 Download gff for BS09114.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11737119..11737184 576..642 95 -> Minus
arm_2R 11739893..11740046 422..575 100 -> Minus
arm_2R 11740176..11740324 273..421 100 -> Minus
arm_2R 11740387..11740511 148..272 100 -> Minus
arm_2R 11740570..11740701 16..147 100   Minus

BS09114.5prime Sequence

648 bp (647 high quality bases) assembled on 2006-01-24

> BS09114.5prime
GAAGTTATCAGTCGACATGACCACGGACTTCCTCTTCCCTAAAATATCGG
ACTGCTCCTACGTGTCCTGTTACTGCGAGGAGAACGTGTGGAAGCTCTGC
GAGCAGGTGAAGCGGACGCGGCCGGAGGAGCTGTCCAAGTGCTACGCCGT
CTTCGTTTCCAACGAGGGTCGCACCGTGCCCCTGTGGCGCCAGAAAGCAG
GACGCGGCGACGATCAAGTTGTGATATGGGACTACCACGTCTTCTTCATA
CACAATCCCTTGCTGAATCGCTGTTTGGTGTTCGATCTGGACACCACACT
GCCCTTTCCCACATATTTTCACAAGTACGTGACGGAGACGTTCCGCTCCG
ATCTGGCCCTGCGTCCGGAGCACCACAGATTCTTTAGAGTCATACCCGCA
GACACATATCTCATTGAGTTCTCGTCGGATCGGCGTCACATGCGTCGGCC
GGATGGCAGTTGGATCAAGCCACCGCCCTCCTATCCACCTATACTCTCCA
ATTCGAATATGCACTGTCTAGGAGACTTTATCTGCATGAGTGCAGGAAAA
GGTCCAGGATCGGTCTACAGCCTGTCGGAGTTCGTGCAAAACTTCTACAA
ATCGCCACATGTGATGGCGCAGAACAACAAGTAGAAGCTTTCTAGACC

BS09114.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8253-PA 618 tun-RA 1..618 17..634 3090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
tun-RC 3446 CG8253-RC 1043..1661 17..635 3095 100 Plus
tun-RB 4110 CG8253-RB 1043..1661 17..635 3095 100 Plus
tun-RD 3074 CG8253-RD 2063..2681 17..635 3095 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15852387..15852542 75..230 780 100 Plus
2R 25286936 2R 15852670..15852819 229..378 750 100 Plus
2R 25286936 2R 15853065..15853196 504..635 660 100 Plus
2R 25286936 2R 15852878..15853006 375..503 645 100 Plus
2R 25286936 2R 15849621..15849679 17..75 295 100 Plus
Blast to na_te.dros performed on 2015-02-09 09:29:48 has no hits.

BS09114.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:59:38 Download gff for BS09114.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8253-PA 1..618 17..634 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:06:10 Download gff for BS09114.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8253-PA 1..618 17..634 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:20:00 Download gff for BS09114.5prime
Subject Subject Range Query Range Percent Splice Strand
tun-RD 2056..2681 9..635 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:49:55 Download gff for BS09114.5prime
Subject Subject Range Query Range Percent Splice Strand
tun-RD 2056..2681 9..635 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:49:55 Download gff for BS09114.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15853065..15853196 504..635 100   Plus
2R 15852388..15852541 76..229 100 -> Plus
2R 15852671..15852819 230..378 100 -> Plus
2R 15852882..15853006 379..503 100 -> Plus
2R 15849614..15849679 9..75 95 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:20:00 Download gff for BS09114.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11739893..11740046 76..229 100 -> Plus
arm_2R 11740176..11740324 230..378 100 -> Plus
arm_2R 11740387..11740511 379..503 100 -> Plus
arm_2R 11740570..11740701 504..635 100   Plus
arm_2R 11737119..11737184 9..75 95 -> Plus

BS09114.complete Sequence

650 bp (650 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636354

> BS09114.complete
GAAGTTATCAGTCGACATGACCACGGACTTCCTCTTCCCTAAAATATCGG
ACTGCTCCTACGTGTCCTGTTACTGCGAGGAGAACGTGTGGAAGCTCTGC
GAGCAGGTGAAGCGGACGCGGCCGGAGGAGCTGTCCAAGTGCTACGCCGT
CTTCGTTTCCAACGAGGGTCGCACCGTGCCCCTGTGGCGCCAGAAAGCAG
GACGCGGCGACGATCAAGTTGTGATATGGGACTACCACGTCTTCTTCATA
CACAATCCCTTGCTGAATCGCTGTTTGGTGTTCGATCTGGACACCACACT
GCCCTTTCCCACATATTTTCACAAGTACGTGACGGAGACGTTCCGCTCCG
ATCTGGCCCTGCGTCCGGAGCACCACAGATTCTTTAGAGTCATACCCGCA
GACACATATCTCATTGAGTTCTCGTCGGATCGGCGTCACATGCGTCGGCC
GGATGGCAGTTGGATCAAGCCACCGCCCTCCTATCCACCTATACTCTCCA
ATTCGAATATGCACTGTCTAGGAGACTTTATCTGCATGAGTGCAGGAAAA
GGTCCAGGATCGGTCTACAGCCTGTCGGAGTTCGTGCAAAACTTCTACAA
ATCGCCACATGTGATGGCGCAGAACAACAAGTAGAAGCTTTCTAGACCAT

BS09114.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:19:10
Subject Length Description Subject Range Query Range Score Percent Strand
tun-RC 618 CG8253-PC 1..618 17..634 3090 100 Plus
tun-RB 618 CG8253-PB 1..618 17..634 3090 100 Plus
tun-RD 618 CG8253-PD 1..618 17..634 3090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:19:11
Subject Length Description Subject Range Query Range Score Percent Strand
tun-RC 3446 CG8253-RC 1043..1661 17..635 3095 100 Plus
tun-RB 4110 CG8253-RB 1043..1661 17..635 3095 100 Plus
tun-RD 3074 CG8253-RD 2063..2681 17..635 3095 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:19:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15852387..15852542 75..230 780 100 Plus
2R 25286936 2R 15852670..15852819 229..378 750 100 Plus
2R 25286936 2R 15853065..15853196 504..635 660 100 Plus
2R 25286936 2R 15852878..15853006 375..503 645 100 Plus
2R 25286936 2R 15849621..15849679 17..75 295 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:19:08 has no hits.

BS09114.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:44 Download gff for BS09114.complete
Subject Subject Range Query Range Percent Splice Strand
tun-RA 1..618 17..634 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:26:58 Download gff for BS09114.complete
Subject Subject Range Query Range Percent Splice Strand
tun-RA 1009..1634 9..635 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:52 Download gff for BS09114.complete
Subject Subject Range Query Range Percent Splice Strand
tun-RD 2063..2680 17..634 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:44 Download gff for BS09114.complete
Subject Subject Range Query Range Percent Splice Strand
tun-RA 1009..1634 9..635 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:21 Download gff for BS09114.complete
Subject Subject Range Query Range Percent Splice Strand
tun-RD 2063..2680 17..634 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:21 Download gff for BS09114.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15852388..15852541 76..229 100 -> Plus
2R 15852671..15852819 230..378 100 -> Plus
2R 15852882..15853006 379..503 100 -> Plus
2R 15853065..15853195 504..634 100   Plus
2R 15849621..15849679 17..75 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:52 Download gff for BS09114.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11737126..11737184 17..75 100 -> Plus
arm_2R 11739893..11740046 76..229 100 -> Plus
arm_2R 11740176..11740324 230..378 100 -> Plus
arm_2R 11740387..11740511 379..503 100 -> Plus
arm_2R 11740570..11740700 504..634 100   Plus

BS09114.pep Sequence

Translation from 16 to 633

> BS09114.pep
MTTDFLFPKISDCSYVSCYCEENVWKLCEQVKRTRPEELSKCYAVFVSNE
GRTVPLWRQKAGRGDDQVVIWDYHVFFIHNPLLNRCLVFDLDTTLPFPTY
FHKYVTETFRSDLALRPEHHRFFRVIPADTYLIEFSSDRRHMRRPDGSWI
KPPPSYPPILSNSNMHCLGDFICMSAGKGPGSVYSLSEFVQNFYKSPHVM
AQNNK*

BS09114.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:24:52
Subject Length Description Subject Range Query Range Score Percent Strand
tun-PC 205 CG8253-PC 1..205 1..205 1140 100 Plus
tun-PB 205 CG8253-PB 1..205 1..205 1140 100 Plus
tun-PD 205 CG8253-PD 1..205 1..205 1140 100 Plus
tun-PA 205 CG8253-PA 1..205 1..205 1140 100 Plus