Clone Sequence Records
BS09121.3prime Sequence
813 bp (782 high quality bases) assembled on 2006-01-24
> BS09121.3prime
ATGGTCTAGAAAGCTTCTACTTGATCTTCTTGGTCTCCTGCTGGCAGAGG
CAAGCCTGTTTGGTGAGGTTCTTGATCCAGGTTCCGTAGCGATTCACTCT
GGCATAGACGCCAGGATAACCGGCCTTGGCACAGCCCTCGCCCCACGAGA
CAACGCCGGCGATCTGATGCTCTCGCGTTCCGCTGGCCACGATGTGCAAA
GGACCTCCACTGTCGCCCTGGCACGAGTCCTTGCCACCCTCGTCGTATCC
GCCACACAGCATGTTATCCGTGATCTTGTTGCCATAGCGACTCTTGCGAC
ATTCGTCCTGCGATAGAATTGGCACTTGAACCTCCTGAAGAGTATCGGAA
GTGGGTCCACCAACTTTGAGCGCTCCCCAGCCAGTGACAATGCCATTCTC
GCCCTTGAAACTTCTGCCCGGCGTTGGCATACAAACGGGATGGAGCACCT
CGTTGAACTCCACCGGCTCATCCAACTTGATGATGGCTATATCGTTGTCA
TAGTTCCGGGCATTATACTTGGGATGCGTGATCACCTCGGCCACCTTGCG
GTCGATCTTTTGCATGTGCGACATCTTGCGGTCATGTTCGAGTAATCTCA
CCGATATTCTTTCCTTTCGAAAGCCATAGACGCAATGCGATGCGGTCAAC
AGGAATTGATCGTTGAGCAAGGAGGCGGCGCAATAGAACCTTCCGCCATA
TAGCAACATAGCCACCCAGGGATACTGATGAACCTCCGTTTCCTGACCAC
CGACTATTCTCTTCTGTATATTGGCTATTCCGCAGACACAGTCGCTGCAA
TTCCTTGGCGGAT
BS09121.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4386-PA | 1119 | CG4386-RA | 323..1119 | 813..17 | 3985 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4386-RA | 1510 | CG4386-RA | 396..1192 | 813..17 | 3985 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21800030..21800509 | 334..813 | 2400 | 100 | Plus |
| 2R | 25286936 | 2R | 21799648..21799972 | 17..341 | 1610 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-08 13:46:38 has no hits.
BS09121.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:59:52 Download gff for
BS09121.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4386-PA | 323..1119 | 17..813 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:06:30 Download gff for
BS09121.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4386-PA | 323..1119 | 17..813 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:49:20 Download gff for
BS09121.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4386-RA | 396..1192 | 17..813 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:30:45 Download gff for
BS09121.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4386-RA | 396..1192 | 17..813 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:30:45 Download gff for
BS09121.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21799648..21799965 | 17..334 | 100 | <- | Plus |
| 2R | 21800031..21800509 | 335..813 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:49:20 Download gff for
BS09121.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17687153..17687470 | 17..334 | 100 | <- | Plus |
| arm_2R | 17687536..17688014 | 335..813 | 100 | | Plus |
BS09121.5prime Sequence
946 bp (814 high quality bases) assembled on 2006-01-24
> BS09121.5prime
GAAGTTATCAGTCGACATGAATCGAGCCTGGTTGTGTCTGCTGATCTGCC
TGGCCTTAAGCTGCGGTCCAAGCCAATCAGCCAGCCAGGATCGTGCAACG
AACCAAACGGCAGCGAGTCCGCTGCTGAAACAATCTCAGAACACATTTAT
CCAATGGGTTCTCTCACTTTTGCCCCAACGTCCCGGCAGTTCGGATTCGG
AAAATGCCACTCTGGCCACCTTGAGCAGCAGCTCTATGATGCCGGACGCG
GCATCTACCACATCAACCACCACACCAGCCCCGTCTTCCAGCACCACTAC
AACGAGAAGGGCAACCACTCCGGCCCCACCCACTTTGAATCCGCCAAGGA
ATTGCAGCGACTGTGTCTGCGGAATAGCCAATATACAGAAGAGAATAGTC
GGTGGTCAGGAAACGGAGGTTCATCAGTATCCCTGGGTGGCTATGTTGCT
ATATGGCGGAAGGTTCTATTGCGCCGCCTCCTTGCTCAACGATCAATTCC
TGTTGACCGCATCGCATTGCGTCTATGGCTTTCGAAAGGAAAGAATATCG
GTGAGATTACTCGAACATGACCGCAAGATGTCGCACATGCAAAAGATCGA
CCGCAAGGTGGCCGAGGTGATCACGCATCCCAAGTATAATGCCCGGAACT
ATGACAACGATATAGCCATCATCAAGTTGGATGAGCCGGTGGAGTTCAAC
GAGGTGCTCCATCCCGTTTGTATGCCAACGCCGGGCAGAAGTTTCAAGGG
CGAGAATGGCATTGTCACTGGCTGGGGAGCGCTCAAAGTTGGTGGACCCA
CTTCCGATACTCTTCANGAGGTTCAAGTGCCAATTCTATCGCANGACGAA
TGTCGCAAGAGTCGCTATGGCAACAAGATCACGGATAACATGCTGTGTGG
CGGATACGACGAGGGTGGCAAGGACTCGTGCCAGGGCGACAGTGGA
BS09121.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4386-PA | 1119 | CG4386-RA | 1..930 | 17..946 | 4612 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:22:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4386-RA | 1510 | CG4386-RA | 74..1003 | 17..946 | 4628 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:22:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21800032..21800831 | 816..17 | 4000 | 100 | Minus |
| 2R | 25286936 | 2R | 21799837..21799972 | 946..811 | 643 | 97.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:22:47 has no hits.
BS09121.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:59:53 Download gff for
BS09121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4386-PA | 1..929 | 17..945 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:06:32 Download gff for
BS09121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4386-PA | 1..929 | 17..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:47:48 Download gff for
BS09121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4386-RA | 68..1002 | 10..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:32:51 Download gff for
BS09121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4386-RA | 68..1002 | 10..945 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:32:51 Download gff for
BS09121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21799838..21799965 | 818..945 | 99 | <- | Minus |
| 2R | 21800031..21800837 | 10..817 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:47:48 Download gff for
BS09121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17687343..17687470 | 818..945 | 99 | <- | Minus |
| arm_2R | 17687536..17688342 | 10..817 | 99 | | Minus |
BS09121.complete Sequence
1151 bp (1151 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636355
> BS09121.complete
GAAGTTATCAGTCGACATGAATCGAGCCTGGTTGTGTCTGCTGATCTGCC
TGGCCTTAAGCTGCGGTCCAAGCCAATCAGCCAGCCAGGATCGTGCAACG
AACCAAACGGCAGCGAGTCCGCTGCTGAAACAATCTCAGAACACATTTAT
CCAATGGGTTCTCTCACTTTTGCCCCAACGTCCCGGCAGTTCGGATTCGG
AAAATGCCACTCTGGCCACCTTGAGCAGCAGCTCTATGATGCCGGACGCG
GCATCTACCACATCAACCACCACACCAGCCCCGTCTTCCAGCACCACTAC
AACGAGAAGGGCAACCACTCCGGCCCCACCCACTTTGAATCCGCCAAGGA
ATTGCAGCGACTGTGTCTGCGGAATAGCCAATATACAGAAGAGAATAGTC
GGTGGTCAGGAAACGGAGGTTCATCAGTATCCCTGGGTGGCTATGTTGCT
ATATGGCGGAAGGTTCTATTGCGCCGCCTCCTTGCTCAACGATCAATTCC
TGTTGACCGCATCGCATTGCGTCTATGGCTTTCGAAAGGAAAGAATATCG
GTGAGATTACTCGAACATGACCGCAAGATGTCGCACATGCAAAAGATCGA
CCGCAAGGTGGCCGAGGTGATCACGCATCCCAAGTATAATGCCCGGAACT
ATGACAACGATATAGCCATCATCAAGTTGGATGAGCCGGTGGAGTTCAAC
GAGGTGCTCCATCCCGTTTGTATGCCAACGCCGGGCAGAAGTTTCAAGGG
CGAGAATGGCATTGTCACTGGCTGGGGAGCGCTCAAAGTTGGTGGACCCA
CTTCCGATACTCTTCAGGAGGTTCAAGTGCCAATTCTATCGCAGGACGAA
TGTCGCAAGAGTCGCTATGGCAACAAGATCACGGATAACATGCTGTGTGG
CGGATACGACGAGGGTGGCAAGGACTCGTGCCAGGGCGACAGTGGAGGTC
CTTTGCACATCGTGGCCAGCGGAACGCGAGAGCATCAGATCGCCGGCGTT
GTCTCGTGGGGCGAGGGCTGTGCCAAGGCCGGTTATCCTGGCGTCTATGC
CAGAGTGAATCGCTACGGAACCTGGATCAAGAACCTCACCAAACAGGCTT
GCCTCTGCCAGCAGGAGACCAAGAAGATCAAGTAGAAGCTTTCTAGACCA
T
BS09121.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:49:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4386-RA | 1119 | CG4386-PA | 1..1119 | 17..1135 | 5595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:49:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4386-RA | 1510 | CG4386-RA | 74..1192 | 17..1135 | 5595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:49:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21800030..21800831 | 818..17 | 4010 | 100 | Minus |
| 2R | 25286936 | 2R | 21799648..21799972 | 1135..811 | 1610 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:49:01 has no hits.
BS09121.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:06 Download gff for
BS09121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4386-RA | 1..1119 | 17..1135 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:45 Download gff for
BS09121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4386-RA | 64..1188 | 10..1135 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:00:09 Download gff for
BS09121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4386-RA | 74..1192 | 17..1135 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:06 Download gff for
BS09121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4386-RA | 64..1188 | 10..1135 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:03 Download gff for
BS09121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4386-RA | 74..1192 | 17..1135 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:03 Download gff for
BS09121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21799648..21799965 | 818..1135 | 100 | <- | Minus |
| 2R | 21800031..21800831 | 17..817 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:00:09 Download gff for
BS09121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17687153..17687470 | 818..1135 | 100 | <- | Minus |
| arm_2R | 17687536..17688336 | 17..817 | 100 | | Minus |
BS09121.pep Sequence
Translation from 16 to 1134
> BS09121.pep
MNRAWLCLLICLALSCGPSQSASQDRATNQTAASPLLKQSQNTFIQWVLS
LLPQRPGSSDSENATLATLSSSSMMPDAASTTSTTTPAPSSSTTTTRRAT
TPAPPTLNPPRNCSDCVCGIANIQKRIVGGQETEVHQYPWVAMLLYGGRF
YCAASLLNDQFLLTASHCVYGFRKERISVRLLEHDRKMSHMQKIDRKVAE
VITHPKYNARNYDNDIAIIKLDEPVEFNEVLHPVCMPTPGRSFKGENGIV
TGWGALKVGGPTSDTLQEVQVPILSQDECRKSRYGNKITDNMLCGGYDEG
GKDSCQGDSGGPLHIVASGTREHQIAGVVSWGEGCAKAGYPGVYARVNRY
GTWIKNLTKQACLCQQETKKIK*
BS09121.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:44:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4386-PA | 372 | CG4386-PA | 1..372 | 1..372 | 1986 | 100 | Plus |
| CG18735-PA | 364 | CG18735-PA | 22..323 | 53..366 | 893 | 54.1 | Plus |
| CG9294-PB | 352 | CG9294-PB | 6..344 | 10..364 | 710 | 42.1 | Plus |
| CG3355-PA | 314 | CG3355-PA | 54..313 | 104..365 | 612 | 45.9 | Plus |
| CG11836-PI | 281 | CG11836-PI | 30..280 | 111..364 | 600 | 44.5 | Plus |
