Clone Sequence Records
BS09122.3prime Sequence
914 bp (863 high quality bases) assembled on 2006-01-24
> BS09122.3prime
ATGGTCTAGAAAGCTTTTAATCCTTGCAATAGCTGGAGCGCAGGACATTT
TCAGCGCCCGTGAGAATGGCTCCTTCGTGCTGAGGACATAACTTTAGGTA
TAGGTCGCTGGACTCCATCGCCTCGATGAGGATGTACTCCAAGTAGATAC
GCGGCGCGGATAGGATGCGCCATGTGAGTGGATTCAGTATATTGGTGGGG
TACTCCCAATTAACAGTCGCGTACTCCGGCTCTCGGAGATTCCGTCCGGC
CACCAAAGCTTTGTATTCATAGCCCGGCTCAAAGTACATTGCCTTCTGGG
AGAACTTCATCATCTCCGTGGCGGCTCGCTCATTTTTGCCAGCCTTCTTC
ACCAGGGCATCGTGCAGCTGAATGGACAGGATGCCCACCTCGCCGCCATG
TAGCGTACTCTCATCGTGTCCGGAAACTCGCACTGTTATCCTATAGTGCA
GTCGGCAGAAGGGCTTGCTATCTCCAGTCCATAGGTAGAAGACCCCTGGT
GAGTCGCCTTGCTGCAGCTGGCCAAGATCAACCTGCTCCTGGTAATCCTC
CTGGCTGTGGTAGCCCATTCGCAGGCACGTGTGGCCCGGCTCCTCGCAAC
TGGTGCACTTCGTGTCCTTAAAGCTCTCGAAAGAATCACAGGTTATTCCA
AGGAAAGGACACTGCGAGCCGATGCTTTCCGTAAAATACTGCTGACTGCG
AATGTGATTGCAGCCGAGGAACTCCTGCATGGTGAGGAACAGCGTCTTCT
TCTTGACCACATCCTGGAACTTCTTGTTGCAGCCGGGATTATCGAAACCA
CCGTTGGGAAAGAAGTCCACATGTCCCAGTCGCATATTGATGCCAAGCCC
GCCTTTCATCANGGGATTGGCATCCGTGTGCACAATGTCCACGAAGTGGG
CATCCGTCTTGTCC
BS09122.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5966-PA | 1623 | CG5966-RA | 726..1623 | 914..17 | 4471 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 16:39:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5966-RB | 3751 | CG5966-RB | 2307..3204 | 914..17 | 4479 | 99.9 | Minus |
CG5966-RA | 2619 | CG5966-RA | 1175..2072 | 914..17 | 4479 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 16:39:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5991483..5992093 | 627..17 | 3055 | 100 | Minus |
X | 23542271 | X | 5991097..5991385 | 914..626 | 1434 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-02 16:39:25 has no hits.
BS09122.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:59:54 Download gff for
BS09122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5966-PA | 726..1623 | 17..914 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:06:33 Download gff for
BS09122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5966-PA | 726..1623 | 17..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:32:59 Download gff for
BS09122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5966-RA | 1175..2072 | 17..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:02:31 Download gff for
BS09122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5966-RA | 1175..2072 | 17..914 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:02:31 Download gff for
BS09122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5991097..5991385 | 626..914 | 99 | -> | Minus |
X | 5991485..5992093 | 17..625 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:32:59 Download gff for
BS09122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5885130..5885418 | 626..914 | 99 | -> | Minus |
arm_X | 5885518..5886126 | 17..625 | 100 | | Minus |
BS09122.5prime Sequence
882 bp (809 high quality bases) assembled on 2006-01-24
> BS09122.5prime
GAAGTTATCAGTCGACATGTATGTGGCCAACACGACGGGCGGCCTAATGC
TGCAGACCATGTTGTATTTGGCCAACCACACCAGTCGGGCGGCAGTCAAC
ACCCTGGTGGACCTACCACCAGCTCCCAAAAGTGACATCAACGAGGTAAA
ATGCTTCGGAGTGTATGGCTGTTTTCCGATCAATGGACCCTGGAACACGG
TGACCCGTTCGATAAATGTGCATCCGCAGAAGCCTTCGGAGATCGAGCCC
CATTTCACACTGCACACGCGAAGGGCATTGGATCAGCCCAAGTATCTGGA
TCTCAATGATCCAGAAAGCGTTCAAGGCATGGGAATGAATCCCAAGGGCA
AGATATTCCTGCTTGTCCATGGATACCTGGAGTCCGGTGAAATTCCCTGG
ATGTGGGACATGGCCAAGGCGCTGCTGGCCCACGAGCCCGAGGGTCGGGC
ATCCGTGGTCCTCATCGATTGGGGCGGTGGCGCTAGTCCGCCGTATGTCC
AGGCGGTTGCCAATATCCGGCTAGTGGGCGCCATCACCGCCCATGTGGTG
CACATGCTGTACGAGGAGTTGCGTCTTCCGAATCTGGACAATGTGCACAT
CATTGGTCACTCACTGGGTGCCCATCTGTCCGGCTATGCCGGCTATCACC
TGCAGCACGACTTTGGACTGAAACCGGCCAGGATAACGGGTCTGGATCCG
GCTGCTCCTCTCTTCACGGACACCGATCCCATCGTGCGGCTGGACAAGAC
GGATGCCCACTTCGTGGACATTGTGCACACGGATGCCAATCCCCTGATGA
AAGGCGGGCTTGGCATCAATATGCGACTGGGACATGTGGACTTCTTTCCC
AACGGTGGTTTCGATAATCCCGGCTGCAACAA
BS09122.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5966-PA | 1623 | CG5966-RA | 1..866 | 17..882 | 4330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:08:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5966-RA | 2619 | CG5966-RA | 450..1315 | 17..882 | 4330 | 100 | Plus |
CG5966-RB | 3751 | CG5966-RB | 1699..2447 | 134..882 | 3745 | 100 | Plus |
CG5966-RB | 3751 | CG5966-RB | 450..567 | 17..134 | 590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:08:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5990489..5991237 | 134..882 | 3745 | 100 | Plus |
X | 23542271 | X | 5989240..5989357 | 17..134 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:08:34 has no hits.
BS09122.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:59:55 Download gff for
BS09122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5966-PA | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:06:36 Download gff for
BS09122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5966-PA | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:23:07 Download gff for
BS09122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5966-RA | 446..1313 | 9..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:49 Download gff for
BS09122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5966-RA | 446..1313 | 9..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:49 Download gff for
BS09122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5989236..5989357 | 9..134 | 96 | -> | Plus |
X | 5990490..5991235 | 135..880 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:23:07 Download gff for
BS09122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5883269..5883390 | 9..134 | 96 | -> | Plus |
arm_X | 5884523..5885268 | 135..880 | 100 | | Plus |
BS09122.complete Sequence
1655 bp (1655 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636356
> BS09122.complete
GAAGTTATCAGTCGACATGTATGTGGCCAACACGACGGGCGGCCTAATGC
TGCAGACCATGTTGTATTTGGCCAACCACACCAGTCGGGCGGCAGTCAAC
ACCCTGGTGGACCTACCACCAGCTCCCAAAAGTGACATCAACGAGGTAAA
ATGCTTCGGAGTGTATGGCTGTTTTCCGATCAATGGACCCTGGAACACGG
TGACCCGTTCGATAAATGTGCATCCGCAGAAGCCTTCGGAGATCGAGCCC
CATTTCACACTGCACACGCGAAGGGCATTGGATCAGCCCAAGTATCTGGA
TCTCAATGATCCAGAAAGCGTTCAAGGCATGGGAATGAATCCCAAGGGCA
AGATATTCCTGCTTGTCCATGGATACCTGGAGTCCGGTGAAATTCCCTGG
ATGTGGGACATGGCCAAGGCGCTGCTGGCCCACGAGCCCGAGGGTCGGGC
ATCCGTGGTCCTCATCGATTGGGGCGGTGGCGCTAGTCCGCCGTATGTCC
AGGCGGTTGCCAATATCCGGCTAGTGGGCGCCATCACCGCCCATGTGGTG
CACATGCTGTACGAGGAGTTGCGTCTTCCGAATCTGGACAATGTGCACAT
CATTGGTCACTCACTGGGTGCCCATCTGTCCGGCTATGCCGGCTATCACC
TGCAGCACGACTTTGGACTGAAACCGGCCAGGATAACGGGTCTGGATCCG
GCTGCTCCTCTCTTCACGGACACCGATCCCATCGTGCGGCTGGACAAGAC
GGATGCCCACTTCGTGGACATTGTGCACACGGATGCCAATCCCCTGATGA
AAGGCGGGCTTGGCATCAATATGCGACTGGGACATGTGGACTTCTTTCCC
AACGGTGGTTTCGATAATCCCGGCTGCAACAAGAAGTTCCAGGATGTGGT
CAAGAAGAAGACGCTGTTCCTCACCATGCAGGAGTTCCTCGGCTGCAATC
ACATTCGCAGTCAGCAGTATTTTACGGAAAGCATCGGCTCGCAGTGTCCT
TTCCTTGGAATAACCTGTGATTCTTTCGAGAGCTTTAAGGACACGAAGTG
CACCAGTTGCGAGGAGCCGGGCCACACGTGCCTGCGAATGGGCTACCACA
GCCAGGAGGATTACCAGGAGCAGGTTGATCTTGGCCAGCTGCAGCAAGGC
GACTCACCAGGGGTCTTCTACCTATGGACTGGAGATAGCAAGCCCTTCTG
CCGACTGCACTATAGGATAACAGTGCGAGTTTCCGGACACGATGAGAGTA
CGCTACATGGCGGCGAGGTGGGCATCCTGTCCATTCAGCTGCACGATGCC
CTGGTGAAGAAGGCTGGCAAAAATGAGCGAGCCGCCACGGAGATGATGAA
GTTCTCCCAGAAGGCAATGTACTTTGAGCCGGGCTATGAATACAAAGCTT
TGGTGGCCGGACGGAATCTCCGAGAGCCGGAGTACGCGACTGTTAATTGG
GAGTACCCCACCAATATACTGAATCCACTCACATGGCGCATCCTATCCGC
GCCGCGTATCTACTTGGAGTACATCCTCATCGAGGCGATGGAGTCCAGCG
ACCTATACCTAAAGTTATGTCCTCAGCACGAAGGAGCCATTCTCACGGGC
GCTGAAAATGTCCTGCGCTCCAGCTATTGCAAGGATTAAAAGCTTTCTAG
ACCAT
BS09122.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:35:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5966-RA | 1623 | CG5966-PA | 1..1623 | 17..1639 | 8115 | 100 | Plus |
CG5966-RB | 1311 | CG5966-PB | 1..1311 | 329..1639 | 6555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:35:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5966-RA | 2619 | CG5966-RA | 450..2072 | 17..1639 | 8115 | 100 | Plus |
CG5966-RB | 3751 | CG5966-RB | 1699..3204 | 134..1639 | 7530 | 100 | Plus |
CG5966-RB | 3751 | CG5966-RB | 450..567 | 17..134 | 590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:35:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5990489..5991385 | 134..1030 | 4485 | 100 | Plus |
X | 23542271 | X | 5991483..5992093 | 1029..1639 | 3055 | 100 | Plus |
X | 23542271 | X | 5989240..5989357 | 17..134 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:35:05 has no hits.
BS09122.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:00 Download gff for
BS09122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5966-RA | 1..1623 | 17..1639 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:36 Download gff for
BS09122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5966-RA | 425..2051 | 9..1639 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:24 Download gff for
BS09122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5966-RA | 450..2070 | 17..1637 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:00 Download gff for
BS09122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5966-RA | 425..2051 | 9..1639 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:48:52 Download gff for
BS09122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5966-RA | 450..2070 | 17..1637 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:48:52 Download gff for
BS09122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5989240..5989357 | 17..134 | 100 | -> | Plus |
X | 5990490..5991385 | 135..1030 | 100 | -> | Plus |
X | 5991485..5992091 | 1031..1637 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:24 Download gff for
BS09122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5883273..5883390 | 17..134 | 100 | -> | Plus |
arm_X | 5884523..5885418 | 135..1030 | 100 | -> | Plus |
arm_X | 5885518..5886124 | 1031..1637 | 100 | | Plus |
BS09122.pep Sequence
Translation from 16 to 1638
> BS09122.pep
MYVANTTGGLMLQTMLYLANHTSRAAVNTLVDLPPAPKSDINEVKCFGVY
GCFPINGPWNTVTRSINVHPQKPSEIEPHFTLHTRRALDQPKYLDLNDPE
SVQGMGMNPKGKIFLLVHGYLESGEIPWMWDMAKALLAHEPEGRASVVLI
DWGGGASPPYVQAVANIRLVGAITAHVVHMLYEELRLPNLDNVHIIGHSL
GAHLSGYAGYHLQHDFGLKPARITGLDPAAPLFTDTDPIVRLDKTDAHFV
DIVHTDANPLMKGGLGINMRLGHVDFFPNGGFDNPGCNKKFQDVVKKKTL
FLTMQEFLGCNHIRSQQYFTESIGSQCPFLGITCDSFESFKDTKCTSCEE
PGHTCLRMGYHSQEDYQEQVDLGQLQQGDSPGVFYLWTGDSKPFCRLHYR
ITVRVSGHDESTLHGGEVGILSIQLHDALVKKAGKNERAATEMMKFSQKA
MYFEPGYEYKALVAGRNLREPEYATVNWEYPTNILNPLTWRILSAPRIYL
EYILIEAMESSDLYLKLCPQHEGAILTGAENVLRSSYCKD*
BS09122.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:42:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5966-PA | 540 | CG5966-PA | 1..540 | 1..540 | 2917 | 100 | Plus |
CG5966-PB | 436 | CG5966-PB | 1..436 | 105..540 | 2354 | 100 | Plus |
CG6847-PB | 1000 | CG6847-PB | 73..478 | 46..409 | 439 | 30.1 | Plus |
CG6847-PA | 1000 | CG6847-PA | 73..478 | 46..409 | 439 | 30.1 | Plus |
CG6472-PB | 389 | CG6472-PB | 46..329 | 80..396 | 351 | 33.6 | Plus |