Clone BS09122 Report

Search the DGRC for BS09122

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:91
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCG5966-RA
Protein status:BS09122.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09122.3prime Sequence

914 bp (863 high quality bases) assembled on 2006-01-24

> BS09122.3prime
ATGGTCTAGAAAGCTTTTAATCCTTGCAATAGCTGGAGCGCAGGACATTT
TCAGCGCCCGTGAGAATGGCTCCTTCGTGCTGAGGACATAACTTTAGGTA
TAGGTCGCTGGACTCCATCGCCTCGATGAGGATGTACTCCAAGTAGATAC
GCGGCGCGGATAGGATGCGCCATGTGAGTGGATTCAGTATATTGGTGGGG
TACTCCCAATTAACAGTCGCGTACTCCGGCTCTCGGAGATTCCGTCCGGC
CACCAAAGCTTTGTATTCATAGCCCGGCTCAAAGTACATTGCCTTCTGGG
AGAACTTCATCATCTCCGTGGCGGCTCGCTCATTTTTGCCAGCCTTCTTC
ACCAGGGCATCGTGCAGCTGAATGGACAGGATGCCCACCTCGCCGCCATG
TAGCGTACTCTCATCGTGTCCGGAAACTCGCACTGTTATCCTATAGTGCA
GTCGGCAGAAGGGCTTGCTATCTCCAGTCCATAGGTAGAAGACCCCTGGT
GAGTCGCCTTGCTGCAGCTGGCCAAGATCAACCTGCTCCTGGTAATCCTC
CTGGCTGTGGTAGCCCATTCGCAGGCACGTGTGGCCCGGCTCCTCGCAAC
TGGTGCACTTCGTGTCCTTAAAGCTCTCGAAAGAATCACAGGTTATTCCA
AGGAAAGGACACTGCGAGCCGATGCTTTCCGTAAAATACTGCTGACTGCG
AATGTGATTGCAGCCGAGGAACTCCTGCATGGTGAGGAACAGCGTCTTCT
TCTTGACCACATCCTGGAACTTCTTGTTGCAGCCGGGATTATCGAAACCA
CCGTTGGGAAAGAAGTCCACATGTCCCAGTCGCATATTGATGCCAAGCCC
GCCTTTCATCANGGGATTGGCATCCGTGTGCACAATGTCCACGAAGTGGG
CATCCGTCTTGTCC

BS09122.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG5966-PA 1623 CG5966-RA 726..1623 914..17 4471 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 16:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5966-RB 3751 CG5966-RB 2307..3204 914..17 4479 99.9 Minus
CG5966-RA 2619 CG5966-RA 1175..2072 914..17 4479 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 16:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5991483..5992093 627..17 3055 100 Minus
X 23542271 X 5991097..5991385 914..626 1434 99.7 Minus
Blast to na_te.dros performed on 2015-02-02 16:39:25 has no hits.

BS09122.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:59:54 Download gff for BS09122.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5966-PA 726..1623 17..914 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:06:33 Download gff for BS09122.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5966-PA 726..1623 17..914 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:32:59 Download gff for BS09122.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5966-RA 1175..2072 17..914 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:02:31 Download gff for BS09122.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5966-RA 1175..2072 17..914 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:02:31 Download gff for BS09122.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5991097..5991385 626..914 99 -> Minus
X 5991485..5992093 17..625 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:32:59 Download gff for BS09122.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5885130..5885418 626..914 99 -> Minus
arm_X 5885518..5886126 17..625 100   Minus

BS09122.5prime Sequence

882 bp (809 high quality bases) assembled on 2006-01-24

> BS09122.5prime
GAAGTTATCAGTCGACATGTATGTGGCCAACACGACGGGCGGCCTAATGC
TGCAGACCATGTTGTATTTGGCCAACCACACCAGTCGGGCGGCAGTCAAC
ACCCTGGTGGACCTACCACCAGCTCCCAAAAGTGACATCAACGAGGTAAA
ATGCTTCGGAGTGTATGGCTGTTTTCCGATCAATGGACCCTGGAACACGG
TGACCCGTTCGATAAATGTGCATCCGCAGAAGCCTTCGGAGATCGAGCCC
CATTTCACACTGCACACGCGAAGGGCATTGGATCAGCCCAAGTATCTGGA
TCTCAATGATCCAGAAAGCGTTCAAGGCATGGGAATGAATCCCAAGGGCA
AGATATTCCTGCTTGTCCATGGATACCTGGAGTCCGGTGAAATTCCCTGG
ATGTGGGACATGGCCAAGGCGCTGCTGGCCCACGAGCCCGAGGGTCGGGC
ATCCGTGGTCCTCATCGATTGGGGCGGTGGCGCTAGTCCGCCGTATGTCC
AGGCGGTTGCCAATATCCGGCTAGTGGGCGCCATCACCGCCCATGTGGTG
CACATGCTGTACGAGGAGTTGCGTCTTCCGAATCTGGACAATGTGCACAT
CATTGGTCACTCACTGGGTGCCCATCTGTCCGGCTATGCCGGCTATCACC
TGCAGCACGACTTTGGACTGAAACCGGCCAGGATAACGGGTCTGGATCCG
GCTGCTCCTCTCTTCACGGACACCGATCCCATCGTGCGGCTGGACAAGAC
GGATGCCCACTTCGTGGACATTGTGCACACGGATGCCAATCCCCTGATGA
AAGGCGGGCTTGGCATCAATATGCGACTGGGACATGTGGACTTCTTTCCC
AACGGTGGTTTCGATAATCCCGGCTGCAACAA

BS09122.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG5966-PA 1623 CG5966-RA 1..866 17..882 4330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:08:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5966-RA 2619 CG5966-RA 450..1315 17..882 4330 100 Plus
CG5966-RB 3751 CG5966-RB 1699..2447 134..882 3745 100 Plus
CG5966-RB 3751 CG5966-RB 450..567 17..134 590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:08:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5990489..5991237 134..882 3745 100 Plus
X 23542271 X 5989240..5989357 17..134 590 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:08:34 has no hits.

BS09122.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:59:55 Download gff for BS09122.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5966-PA 1..864 17..880 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:06:36 Download gff for BS09122.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5966-PA 1..864 17..880 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:23:07 Download gff for BS09122.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5966-RA 446..1313 9..880 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:49 Download gff for BS09122.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5966-RA 446..1313 9..880 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:49 Download gff for BS09122.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5989236..5989357 9..134 96 -> Plus
X 5990490..5991235 135..880 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:23:07 Download gff for BS09122.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5883269..5883390 9..134 96 -> Plus
arm_X 5884523..5885268 135..880 100   Plus

BS09122.complete Sequence

1655 bp (1655 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636356

> BS09122.complete
GAAGTTATCAGTCGACATGTATGTGGCCAACACGACGGGCGGCCTAATGC
TGCAGACCATGTTGTATTTGGCCAACCACACCAGTCGGGCGGCAGTCAAC
ACCCTGGTGGACCTACCACCAGCTCCCAAAAGTGACATCAACGAGGTAAA
ATGCTTCGGAGTGTATGGCTGTTTTCCGATCAATGGACCCTGGAACACGG
TGACCCGTTCGATAAATGTGCATCCGCAGAAGCCTTCGGAGATCGAGCCC
CATTTCACACTGCACACGCGAAGGGCATTGGATCAGCCCAAGTATCTGGA
TCTCAATGATCCAGAAAGCGTTCAAGGCATGGGAATGAATCCCAAGGGCA
AGATATTCCTGCTTGTCCATGGATACCTGGAGTCCGGTGAAATTCCCTGG
ATGTGGGACATGGCCAAGGCGCTGCTGGCCCACGAGCCCGAGGGTCGGGC
ATCCGTGGTCCTCATCGATTGGGGCGGTGGCGCTAGTCCGCCGTATGTCC
AGGCGGTTGCCAATATCCGGCTAGTGGGCGCCATCACCGCCCATGTGGTG
CACATGCTGTACGAGGAGTTGCGTCTTCCGAATCTGGACAATGTGCACAT
CATTGGTCACTCACTGGGTGCCCATCTGTCCGGCTATGCCGGCTATCACC
TGCAGCACGACTTTGGACTGAAACCGGCCAGGATAACGGGTCTGGATCCG
GCTGCTCCTCTCTTCACGGACACCGATCCCATCGTGCGGCTGGACAAGAC
GGATGCCCACTTCGTGGACATTGTGCACACGGATGCCAATCCCCTGATGA
AAGGCGGGCTTGGCATCAATATGCGACTGGGACATGTGGACTTCTTTCCC
AACGGTGGTTTCGATAATCCCGGCTGCAACAAGAAGTTCCAGGATGTGGT
CAAGAAGAAGACGCTGTTCCTCACCATGCAGGAGTTCCTCGGCTGCAATC
ACATTCGCAGTCAGCAGTATTTTACGGAAAGCATCGGCTCGCAGTGTCCT
TTCCTTGGAATAACCTGTGATTCTTTCGAGAGCTTTAAGGACACGAAGTG
CACCAGTTGCGAGGAGCCGGGCCACACGTGCCTGCGAATGGGCTACCACA
GCCAGGAGGATTACCAGGAGCAGGTTGATCTTGGCCAGCTGCAGCAAGGC
GACTCACCAGGGGTCTTCTACCTATGGACTGGAGATAGCAAGCCCTTCTG
CCGACTGCACTATAGGATAACAGTGCGAGTTTCCGGACACGATGAGAGTA
CGCTACATGGCGGCGAGGTGGGCATCCTGTCCATTCAGCTGCACGATGCC
CTGGTGAAGAAGGCTGGCAAAAATGAGCGAGCCGCCACGGAGATGATGAA
GTTCTCCCAGAAGGCAATGTACTTTGAGCCGGGCTATGAATACAAAGCTT
TGGTGGCCGGACGGAATCTCCGAGAGCCGGAGTACGCGACTGTTAATTGG
GAGTACCCCACCAATATACTGAATCCACTCACATGGCGCATCCTATCCGC
GCCGCGTATCTACTTGGAGTACATCCTCATCGAGGCGATGGAGTCCAGCG
ACCTATACCTAAAGTTATGTCCTCAGCACGAAGGAGCCATTCTCACGGGC
GCTGAAAATGTCCTGCGCTCCAGCTATTGCAAGGATTAAAAGCTTTCTAG
ACCAT

BS09122.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:35:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5966-RA 1623 CG5966-PA 1..1623 17..1639 8115 100 Plus
CG5966-RB 1311 CG5966-PB 1..1311 329..1639 6555 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5966-RA 2619 CG5966-RA 450..2072 17..1639 8115 100 Plus
CG5966-RB 3751 CG5966-RB 1699..3204 134..1639 7530 100 Plus
CG5966-RB 3751 CG5966-RB 450..567 17..134 590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5990489..5991385 134..1030 4485 100 Plus
X 23542271 X 5991483..5992093 1029..1639 3055 100 Plus
X 23542271 X 5989240..5989357 17..134 590 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:35:05 has no hits.

BS09122.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:00 Download gff for BS09122.complete
Subject Subject Range Query Range Percent Splice Strand
CG5966-RA 1..1623 17..1639 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:36 Download gff for BS09122.complete
Subject Subject Range Query Range Percent Splice Strand
CG5966-RA 425..2051 9..1639 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:24 Download gff for BS09122.complete
Subject Subject Range Query Range Percent Splice Strand
CG5966-RA 450..2070 17..1637 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:00 Download gff for BS09122.complete
Subject Subject Range Query Range Percent Splice Strand
CG5966-RA 425..2051 9..1639 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:48:52 Download gff for BS09122.complete
Subject Subject Range Query Range Percent Splice Strand
CG5966-RA 450..2070 17..1637 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:48:52 Download gff for BS09122.complete
Subject Subject Range Query Range Percent Splice Strand
X 5989240..5989357 17..134 100 -> Plus
X 5990490..5991385 135..1030 100 -> Plus
X 5991485..5992091 1031..1637 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:24 Download gff for BS09122.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5883273..5883390 17..134 100 -> Plus
arm_X 5884523..5885418 135..1030 100 -> Plus
arm_X 5885518..5886124 1031..1637 100   Plus

BS09122.pep Sequence

Translation from 16 to 1638

> BS09122.pep
MYVANTTGGLMLQTMLYLANHTSRAAVNTLVDLPPAPKSDINEVKCFGVY
GCFPINGPWNTVTRSINVHPQKPSEIEPHFTLHTRRALDQPKYLDLNDPE
SVQGMGMNPKGKIFLLVHGYLESGEIPWMWDMAKALLAHEPEGRASVVLI
DWGGGASPPYVQAVANIRLVGAITAHVVHMLYEELRLPNLDNVHIIGHSL
GAHLSGYAGYHLQHDFGLKPARITGLDPAAPLFTDTDPIVRLDKTDAHFV
DIVHTDANPLMKGGLGINMRLGHVDFFPNGGFDNPGCNKKFQDVVKKKTL
FLTMQEFLGCNHIRSQQYFTESIGSQCPFLGITCDSFESFKDTKCTSCEE
PGHTCLRMGYHSQEDYQEQVDLGQLQQGDSPGVFYLWTGDSKPFCRLHYR
ITVRVSGHDESTLHGGEVGILSIQLHDALVKKAGKNERAATEMMKFSQKA
MYFEPGYEYKALVAGRNLREPEYATVNWEYPTNILNPLTWRILSAPRIYL
EYILIEAMESSDLYLKLCPQHEGAILTGAENVLRSSYCKD*

BS09122.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5966-PA 540 CG5966-PA 1..540 1..540 2917 100 Plus
CG5966-PB 436 CG5966-PB 1..436 105..540 2354 100 Plus
CG6847-PB 1000 CG6847-PB 73..478 46..409 439 30.1 Plus
CG6847-PA 1000 CG6847-PA 73..478 46..409 439 30.1 Plus
CG6472-PB 389 CG6472-PB 46..329 80..396 351 33.6 Plus