Clone BS09126 Report

Search the DGRC for BS09126

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:91
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptRabX1-RA
Protein status:BS09126.pep: full length peptide match
Sequenced Size:818

Clone Sequence Records

BS09126.3prime Sequence

816 bp (815 high quality bases) assembled on 2006-01-24

> BS09126.3prime
ATGGTCTAGAAAGCTTTTAGTAGCAACACCAGCTGGGCCTCTCCACCTCG
CCGAGGGCGATGTGCTCGATGCTCCACGGCGCCGTTTCCAGCCGCCCCAC
GCCATTGGTCTTCACGTCCTCGCCCTCCACCGCCAAGCCAATGTCCACGT
AGGGCAGACGGAACGCTGCATTTCCGGAGCTCCTGGCCAGGGCGGCCACC
GTGTGACTGAAGGCAGTGTTGGTGTTGGTGTAGGCCAGCGAATCAGTCGA
CTGGAAGGAGCGCAGCGACGGACTCTTGCCCTCGTCTGCCAGGCGAACCA
GTCCCTGGGCAGTGGATATGAACACTTGCTCCAGTCCCTGATCCGTTTCG
GTGGAGGTTTCGAAGTAGGTGGCCCCAATGGAGGTGGCGAACACGAAGGC
CTCCTCCCGGGAGACCGCTCGCTGCGCCTGCATGTCCATCTTGTTACCCA
CCAGCGTCAGTATCATCGGGTCCTGGACATTGCGGTGCAGCTCCTGAATC
CACGACTTGATCTCCGTGAATGTCTTGTACTGCGTTAGATCGAACACCAG
AATGGCGGCGTTGGCATTCCTGTAGTACATGGGCGCCACCGCCCGATACC
GCTCCTGGCCAGCTGTATCCCAGATTTGCAATTTAATTTTGACCTCGTCC
AGGATGATGTTGCACGTGAAGAAGGACACGGCTATCGTGGGTACCTCGCT
TTCCTTGCGGTGCAGCGTGTTCTTTATGTAGCGGATGACCAAACGTGTTT
TGCCCACACCTCGCGAGCCCAGAACAAGCACTTTGCCCTCGATTCCGCGC
ATGACGACTGATAACT

BS09126.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3870-PA 786 chrw-RA 1..786 802..17 3930 100 Minus
CG3320-PB 441 Rab1-RB 178..215 637..600 140 94.7 Minus
CG3320-PA 618 Rab1-RA 178..215 637..600 140 94.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:59:02
Subject Length Description Subject Range Query Range Score Percent Strand
RabX1-RA 1648 CG3870-RA 344..1129 802..17 3930 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23520358..23520966 17..625 3045 100 Plus
2R 25286936 2R 23522059..23522194 626..761 680 100 Plus
2R 25286936 2R 23523226..23523270 758..802 225 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:59:00 has no hits.

BS09126.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:00:04 Download gff for BS09126.3prime
Subject Subject Range Query Range Percent Splice Strand
chrw-PA 1..786 17..802 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:06:46 Download gff for BS09126.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3870-PA 1..786 17..802 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:25:36 Download gff for BS09126.3prime
Subject Subject Range Query Range Percent Splice Strand
RabX1-RA 336..1140 5..811 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:38 Download gff for BS09126.3prime
Subject Subject Range Query Range Percent Splice Strand
RabX1-RA 336..1140 5..811 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:38 Download gff for BS09126.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23520347..23520966 5..625 99 <- Plus
2R 23522059..23522192 626..759 100 <- Plus
2R 23523228..23523278 760..811 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:25:36 Download gff for BS09126.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19407870..19408489 5..625 99 <- Plus
arm_2R 19409582..19409715 626..759 100 <- Plus
arm_2R 19410751..19410801 760..811 92   Plus

BS09126.5prime Sequence

816 bp (799 high quality bases) assembled on 2006-01-24

> BS09126.5prime
GAAGTTATCAGTCGTCATGCGCGGAATCGAGGGCAAAGTGCTTGTTCTGG
GCTCGCGAGGTGTGGGCAAAACACGTTTGGTCATCCGCTACATAAAGAAC
ACGCTGCACCGCAAGGAAAGCGAGGTACCCACGATAGCCGTGTCCTTCTT
CACGTGCAACATCATCCTGGACGAGGTCAAAATTAAATTGCAAATCTGGG
ATACAGCTGGCCAGGAGCGGTATCGGGCGGTGGCGCCCATGTACTACAGG
AATGCCAACGCCGCCATTCTGGTGTTCGATCTAACGCAGTACAAGACATT
CACGGAGATCAAGTCGTGGATTCAGGAGCTGCACCGCAATGTCCAGGACC
CGATGATACTGACGCTGGTGGGTAACAAGATGGACATGCAGGCGCAGCGA
GCGGTCTCCCGGGAGGAGGCCTTCGTGTTCGCCACCTCCATTGGGGCCAC
CTACTTCGAAACCTCCACCGAAACGGATCAGGGACTGGAGCAAGTGTTCA
TATCCACTGCCCAGGGACTGGTTCGCCTGGCAGACGAGGGCAAGAGTCCG
TCGCTGCGCTCCTTCCAGTCGACTGATTCGCTGGCCTACACCAACACCAA
CACTGCCTTCAGTCACACGGTGGCCGCCCTGGCCAGGAGCTCCGGAAATG
CAGCGTTCCGTCTGCCCTACGTGGACATTGGCTTGGCGGTGGAGGGCGAG
GACGTGAAGACCAATGGCGTGGGGCGGCTGGAAACGGCGCCGTGGAGCAT
CGAGCACATCGCCCTCGGCGAGGTGGAGAGGCCCAGCTGGTGTTGCTACT
AAAAGCTTTCTAGACC

BS09126.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3870-PA 786 chrw-RA 1..786 17..802 3930 100 Plus
CG3320-PB 441 Rab1-RB 178..215 182..219 140 94.7 Plus
CG3320-PA 618 Rab1-RA 178..215 182..219 140 94.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:16:58
Subject Length Description Subject Range Query Range Score Percent Strand
RabX1-RA 1648 CG3870-RA 344..1129 17..802 3930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23520358..23520966 802..194 3045 100 Minus
2R 25286936 2R 23522059..23522194 193..58 680 100 Minus
2R 25286936 2R 23523226..23523270 61..17 225 100 Minus
Blast to na_te.dros performed on 2015-02-11 13:16:57 has no hits.

BS09126.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:00:06 Download gff for BS09126.5prime
Subject Subject Range Query Range Percent Splice Strand
chrw-PA 1..786 17..802 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:06:47 Download gff for BS09126.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3870-PA 1..786 17..802 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:21:09 Download gff for BS09126.5prime
Subject Subject Range Query Range Percent Splice Strand
RabX1-RA 336..1142 8..816 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:42:08 Download gff for BS09126.5prime
Subject Subject Range Query Range Percent Splice Strand
RabX1-RA 336..1142 8..816 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:42:08 Download gff for BS09126.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23520344..23520966 194..816 99 <- Minus
2R 23522059..23522192 60..193 100 <- Minus
2R 23523228..23523278 8..59 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:21:09 Download gff for BS09126.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19407867..19408489 194..816 99 <- Minus
arm_2R 19409582..19409715 60..193 100 <- Minus
arm_2R 19410751..19410801 8..59 92   Minus

BS09126.complete Sequence

818 bp assembled on 2008-08-15

GenBank Submission: FJ636357

> BS09126.complete
GAAGTTATCAGTCGTCATGCGCGGAATCGAGGGCAAAGTGCTTGTTCTGG
GCTCGCGAGGTGTGGGCAAAACACGTTTGGTCATCCGCTACATAAAGAAC
ACGCTGCACCGCAAGGAAAGCGAGGTACCCACGATAGCCGTGTCCTTCTT
CACGTGCAACATCATCCTGGACGAGGTCAAAATTAAATTGCAAATCTGGG
ATACAGCTGGCCAGGAGCGGTATCGGGCGGTGGCGCCCATGTACTACAGG
AATGCCAACGCCGCCATTCTGGTGTTCGATCTAACGCAGTACAAGACATT
CACGGAGATCAAGTCGTGGATTCAGGAGCTGCACCGCAATGTCCAGGACC
CGATGATACTGACGCTGGTGGGTAACAAGATGGACATGCAGGCGCAGCGA
GCGGTCTCCCGGGAGGAGGCCTTCGTGTTCGCCACCTCCATTGGGGCCAC
CTACTTCGAAACCTCCACCGAAACGGATCAGGGACTGGAGCAAGTGTTCA
TATCCACTGCCCAGGGACTGGTTCGCCTGGCAGACGAGGGCAAGAGTCCG
TCGCTGCGCTCCTTCCAGTCGACTGATTCGCTGGCCTACACCAACACCAA
CACTGCCTTCAGTCACACGGTGGCCGCCCTGGCCAGGAGCTCCGGAAATG
CAGCGTTCCGTCTGCCCTACGTGGACATTGGCTTGGCGGTGGAGGGCGAG
GACGTGAAGACCAATGGCGTGGGGCGGCTGGAAACGGCGCCGTGGAGCAT
CGAGCACATCGCCCTCGGCGAGGTGGAGAGGCCCAGCTGGTGTTGCTACT
AAAAGCTTTCTAGACCAT

BS09126.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:11:12
Subject Length Description Subject Range Query Range Score Percent Strand
RabX1-RA 786 CG3870-PA 1..786 17..802 3930 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:11:13
Subject Length Description Subject Range Query Range Score Percent Strand
RabX1-RA 1648 CG3870-RA 344..1129 17..802 3930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:11:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23520358..23520966 802..194 3045 100 Minus
2R 25286936 2R 23522059..23522194 193..58 680 100 Minus
2R 25286936 2R 23523226..23523270 61..17 225 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:11:11 has no hits.

BS09126.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:55:19 Download gff for BS09126.complete
Subject Subject Range Query Range Percent Splice Strand
chrw-RA 296..1100 8..814 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:27 Download gff for BS09126.complete
Subject Subject Range Query Range Percent Splice Strand
RabX1-RA 344..1127 17..800 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:02:44 Download gff for BS09126.complete
Subject Subject Range Query Range Percent Splice Strand
chrw-RA 304..1087 17..800 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:43 Download gff for BS09126.complete
Subject Subject Range Query Range Percent Splice Strand
RabX1-RA 344..1127 17..800 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:43 Download gff for BS09126.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23520360..23520966 194..800 100 <- Minus
2R 23522059..23522192 60..193 100 <- Minus
2R 23523228..23523270 17..59 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:27 Download gff for BS09126.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19407883..19408489 194..800 100 <- Minus
arm_2R 19409582..19409715 60..193 100 <- Minus
arm_2R 19410751..19410793 17..59 100   Minus

BS09126.pep Sequence

Translation from 16 to 801

> BS09126.pep
MRGIEGKVLVLGSRGVGKTRLVIRYIKNTLHRKESEVPTIAVSFFTCNII
LDEVKIKLQIWDTAGQERYRAVAPMYYRNANAAILVFDLTQYKTFTEIKS
WIQELHRNVQDPMILTLVGNKMDMQAQRAVSREEAFVFATSIGATYFETS
TETDQGLEQVFISTAQGLVRLADEGKSPSLRSFQSTDSLAYTNTNTAFSH
TVAALARSSGNAAFRLPYVDIGLAVEGEDVKTNGVGRLETAPWSIEHIAL
GEVERPSWCCY*

BS09126.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
RabX1-PA 261 CG3870-PA 1..261 1..261 1332 100 Plus
Rab5-PI 219 CG3664-PI 31..215 7..195 345 36.5 Plus
Rab5-PH 219 CG3664-PH 31..215 7..195 345 36.5 Plus
Rab5-PG 219 CG3664-PG 31..215 7..195 345 36.5 Plus
Rab5-PE 219 CG3664-PE 31..215 7..195 345 36.5 Plus