Clone Sequence Records
BS09126.3prime Sequence
816 bp (815 high quality bases) assembled on 2006-01-24
> BS09126.3prime
ATGGTCTAGAAAGCTTTTAGTAGCAACACCAGCTGGGCCTCTCCACCTCG
CCGAGGGCGATGTGCTCGATGCTCCACGGCGCCGTTTCCAGCCGCCCCAC
GCCATTGGTCTTCACGTCCTCGCCCTCCACCGCCAAGCCAATGTCCACGT
AGGGCAGACGGAACGCTGCATTTCCGGAGCTCCTGGCCAGGGCGGCCACC
GTGTGACTGAAGGCAGTGTTGGTGTTGGTGTAGGCCAGCGAATCAGTCGA
CTGGAAGGAGCGCAGCGACGGACTCTTGCCCTCGTCTGCCAGGCGAACCA
GTCCCTGGGCAGTGGATATGAACACTTGCTCCAGTCCCTGATCCGTTTCG
GTGGAGGTTTCGAAGTAGGTGGCCCCAATGGAGGTGGCGAACACGAAGGC
CTCCTCCCGGGAGACCGCTCGCTGCGCCTGCATGTCCATCTTGTTACCCA
CCAGCGTCAGTATCATCGGGTCCTGGACATTGCGGTGCAGCTCCTGAATC
CACGACTTGATCTCCGTGAATGTCTTGTACTGCGTTAGATCGAACACCAG
AATGGCGGCGTTGGCATTCCTGTAGTACATGGGCGCCACCGCCCGATACC
GCTCCTGGCCAGCTGTATCCCAGATTTGCAATTTAATTTTGACCTCGTCC
AGGATGATGTTGCACGTGAAGAAGGACACGGCTATCGTGGGTACCTCGCT
TTCCTTGCGGTGCAGCGTGTTCTTTATGTAGCGGATGACCAAACGTGTTT
TGCCCACACCTCGCGAGCCCAGAACAAGCACTTTGCCCTCGATTCCGCGC
ATGACGACTGATAACT
BS09126.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3870-PA | 786 | chrw-RA | 1..786 | 802..17 | 3930 | 100 | Minus |
CG3320-PB | 441 | Rab1-RB | 178..215 | 637..600 | 140 | 94.7 | Minus |
CG3320-PA | 618 | Rab1-RA | 178..215 | 637..600 | 140 | 94.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:59:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RabX1-RA | 1648 | CG3870-RA | 344..1129 | 802..17 | 3930 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:58:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23520358..23520966 | 17..625 | 3045 | 100 | Plus |
2R | 25286936 | 2R | 23522059..23522194 | 626..761 | 680 | 100 | Plus |
2R | 25286936 | 2R | 23523226..23523270 | 758..802 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:59:00 has no hits.
BS09126.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:00:04 Download gff for
BS09126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrw-PA | 1..786 | 17..802 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:06:46 Download gff for
BS09126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3870-PA | 1..786 | 17..802 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:25:36 Download gff for
BS09126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RabX1-RA | 336..1140 | 5..811 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:38 Download gff for
BS09126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RabX1-RA | 336..1140 | 5..811 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:38 Download gff for
BS09126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23520347..23520966 | 5..625 | 99 | <- | Plus |
2R | 23522059..23522192 | 626..759 | 100 | <- | Plus |
2R | 23523228..23523278 | 760..811 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:25:36 Download gff for
BS09126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19407870..19408489 | 5..625 | 99 | <- | Plus |
arm_2R | 19409582..19409715 | 626..759 | 100 | <- | Plus |
arm_2R | 19410751..19410801 | 760..811 | 92 | | Plus |
BS09126.5prime Sequence
816 bp (799 high quality bases) assembled on 2006-01-24
> BS09126.5prime
GAAGTTATCAGTCGTCATGCGCGGAATCGAGGGCAAAGTGCTTGTTCTGG
GCTCGCGAGGTGTGGGCAAAACACGTTTGGTCATCCGCTACATAAAGAAC
ACGCTGCACCGCAAGGAAAGCGAGGTACCCACGATAGCCGTGTCCTTCTT
CACGTGCAACATCATCCTGGACGAGGTCAAAATTAAATTGCAAATCTGGG
ATACAGCTGGCCAGGAGCGGTATCGGGCGGTGGCGCCCATGTACTACAGG
AATGCCAACGCCGCCATTCTGGTGTTCGATCTAACGCAGTACAAGACATT
CACGGAGATCAAGTCGTGGATTCAGGAGCTGCACCGCAATGTCCAGGACC
CGATGATACTGACGCTGGTGGGTAACAAGATGGACATGCAGGCGCAGCGA
GCGGTCTCCCGGGAGGAGGCCTTCGTGTTCGCCACCTCCATTGGGGCCAC
CTACTTCGAAACCTCCACCGAAACGGATCAGGGACTGGAGCAAGTGTTCA
TATCCACTGCCCAGGGACTGGTTCGCCTGGCAGACGAGGGCAAGAGTCCG
TCGCTGCGCTCCTTCCAGTCGACTGATTCGCTGGCCTACACCAACACCAA
CACTGCCTTCAGTCACACGGTGGCCGCCCTGGCCAGGAGCTCCGGAAATG
CAGCGTTCCGTCTGCCCTACGTGGACATTGGCTTGGCGGTGGAGGGCGAG
GACGTGAAGACCAATGGCGTGGGGCGGCTGGAAACGGCGCCGTGGAGCAT
CGAGCACATCGCCCTCGGCGAGGTGGAGAGGCCCAGCTGGTGTTGCTACT
AAAAGCTTTCTAGACC
BS09126.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:20:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3870-PA | 786 | chrw-RA | 1..786 | 17..802 | 3930 | 100 | Plus |
CG3320-PB | 441 | Rab1-RB | 178..215 | 182..219 | 140 | 94.7 | Plus |
CG3320-PA | 618 | Rab1-RA | 178..215 | 182..219 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:16:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RabX1-RA | 1648 | CG3870-RA | 344..1129 | 17..802 | 3930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:16:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23520358..23520966 | 802..194 | 3045 | 100 | Minus |
2R | 25286936 | 2R | 23522059..23522194 | 193..58 | 680 | 100 | Minus |
2R | 25286936 | 2R | 23523226..23523270 | 61..17 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 13:16:57 has no hits.
BS09126.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:00:06 Download gff for
BS09126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrw-PA | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:06:47 Download gff for
BS09126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3870-PA | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:21:09 Download gff for
BS09126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RabX1-RA | 336..1142 | 8..816 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:42:08 Download gff for
BS09126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RabX1-RA | 336..1142 | 8..816 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:42:08 Download gff for
BS09126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23520344..23520966 | 194..816 | 99 | <- | Minus |
2R | 23522059..23522192 | 60..193 | 100 | <- | Minus |
2R | 23523228..23523278 | 8..59 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:21:09 Download gff for
BS09126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19407867..19408489 | 194..816 | 99 | <- | Minus |
arm_2R | 19409582..19409715 | 60..193 | 100 | <- | Minus |
arm_2R | 19410751..19410801 | 8..59 | 92 | | Minus |
BS09126.complete Sequence
818 bp assembled on 2008-08-15
GenBank Submission: FJ636357
> BS09126.complete
GAAGTTATCAGTCGTCATGCGCGGAATCGAGGGCAAAGTGCTTGTTCTGG
GCTCGCGAGGTGTGGGCAAAACACGTTTGGTCATCCGCTACATAAAGAAC
ACGCTGCACCGCAAGGAAAGCGAGGTACCCACGATAGCCGTGTCCTTCTT
CACGTGCAACATCATCCTGGACGAGGTCAAAATTAAATTGCAAATCTGGG
ATACAGCTGGCCAGGAGCGGTATCGGGCGGTGGCGCCCATGTACTACAGG
AATGCCAACGCCGCCATTCTGGTGTTCGATCTAACGCAGTACAAGACATT
CACGGAGATCAAGTCGTGGATTCAGGAGCTGCACCGCAATGTCCAGGACC
CGATGATACTGACGCTGGTGGGTAACAAGATGGACATGCAGGCGCAGCGA
GCGGTCTCCCGGGAGGAGGCCTTCGTGTTCGCCACCTCCATTGGGGCCAC
CTACTTCGAAACCTCCACCGAAACGGATCAGGGACTGGAGCAAGTGTTCA
TATCCACTGCCCAGGGACTGGTTCGCCTGGCAGACGAGGGCAAGAGTCCG
TCGCTGCGCTCCTTCCAGTCGACTGATTCGCTGGCCTACACCAACACCAA
CACTGCCTTCAGTCACACGGTGGCCGCCCTGGCCAGGAGCTCCGGAAATG
CAGCGTTCCGTCTGCCCTACGTGGACATTGGCTTGGCGGTGGAGGGCGAG
GACGTGAAGACCAATGGCGTGGGGCGGCTGGAAACGGCGCCGTGGAGCAT
CGAGCACATCGCCCTCGGCGAGGTGGAGAGGCCCAGCTGGTGTTGCTACT
AAAAGCTTTCTAGACCAT
BS09126.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:11:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RabX1-RA | 786 | CG3870-PA | 1..786 | 17..802 | 3930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:11:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RabX1-RA | 1648 | CG3870-RA | 344..1129 | 17..802 | 3930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:11:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23520358..23520966 | 802..194 | 3045 | 100 | Minus |
2R | 25286936 | 2R | 23522059..23522194 | 193..58 | 680 | 100 | Minus |
2R | 25286936 | 2R | 23523226..23523270 | 61..17 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:11:11 has no hits.
BS09126.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:55:19 Download gff for
BS09126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrw-RA | 296..1100 | 8..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:27 Download gff for
BS09126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RabX1-RA | 344..1127 | 17..800 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:02:44 Download gff for
BS09126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrw-RA | 304..1087 | 17..800 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:43 Download gff for
BS09126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RabX1-RA | 344..1127 | 17..800 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:43 Download gff for
BS09126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23520360..23520966 | 194..800 | 100 | <- | Minus |
2R | 23522059..23522192 | 60..193 | 100 | <- | Minus |
2R | 23523228..23523270 | 17..59 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:27 Download gff for
BS09126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19407883..19408489 | 194..800 | 100 | <- | Minus |
arm_2R | 19409582..19409715 | 60..193 | 100 | <- | Minus |
arm_2R | 19410751..19410793 | 17..59 | 100 | | Minus |
BS09126.pep Sequence
Translation from 16 to 801
> BS09126.pep
MRGIEGKVLVLGSRGVGKTRLVIRYIKNTLHRKESEVPTIAVSFFTCNII
LDEVKIKLQIWDTAGQERYRAVAPMYYRNANAAILVFDLTQYKTFTEIKS
WIQELHRNVQDPMILTLVGNKMDMQAQRAVSREEAFVFATSIGATYFETS
TETDQGLEQVFISTAQGLVRLADEGKSPSLRSFQSTDSLAYTNTNTAFSH
TVAALARSSGNAAFRLPYVDIGLAVEGEDVKTNGVGRLETAPWSIEHIAL
GEVERPSWCCY*
BS09126.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:21:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RabX1-PA | 261 | CG3870-PA | 1..261 | 1..261 | 1332 | 100 | Plus |
Rab5-PI | 219 | CG3664-PI | 31..215 | 7..195 | 345 | 36.5 | Plus |
Rab5-PH | 219 | CG3664-PH | 31..215 | 7..195 | 345 | 36.5 | Plus |
Rab5-PG | 219 | CG3664-PG | 31..215 | 7..195 | 345 | 36.5 | Plus |
Rab5-PE | 219 | CG3664-PE | 31..215 | 7..195 | 345 | 36.5 | Plus |