Clone Sequence Records
BS09136.3prime Sequence
888 bp (861 high quality bases) assembled on 2006-01-24
> BS09136.3prime
ATGGTCTAGAAAGCTTCTAGATCCTCACCAGAACCTCGTAATTCTCCAGA
CGCACCTCCTCGCCACCGAATGGGATGTAGATGCAGCCGTGCGAGGGATG
GATCTTGCCCACACTCAAGCTGTCGCAGTAGATGGCCCTGCCGACGTAGA
GGGGCTCCCCGTCGACATTCGGACCGGAGGACAGGGCTCCGGGAGCCACA
TTTCCGTGCGAGGCCGGAACCCAACGGAATCCGGATCCCGTCAGCACCTG
GACGTCGGTGAGCTCGTGCTCCGCCTGGGCATAGGCGGCATAGGCTTTCC
CCTTCGCCGGCACCACTTTGGCTGGCAGCAGATCACCATTGCGGAACACC
CTGCCCACGTAGATGGTGTCCCCGTTGGAATCGTGCCCAGCAACCAGAGC
TCCATCCGGAATATTTGTTGCGGTGGTGTCGATCCAACGTTCCGGCTGGC
ACAGCACCTCGTAGGCAAAGATCTTAACCTCATCGGAATCGTAGGGAATA
TACAGGCAGCCGTGGGATGGATGCACCTTGCCCATGGTTAAGCTGCCGGC
ATGATAACCCCTGCCCGCATACAAATACTCGCCGTCCACATTCCGACCAA
CTTTGACGGCGCCCGGCGGCACCTCCCCGTTCTCCGCCGACAGCCACTCG
TAGTTGTAGCCGGAAAGCACCTCGTAGTTCTCCAGCTCGTGCTCCTCGCG
CGCATACGCCACGTAGGCCTTGCCCTTGTTGGGAATCACCTTCGCCGGCA
GCATGTCGTTGGAGAAGAAGGCACGGCCCACGTAGATGGTGTCCCCGTCC
GAATCGTGACCAGCCACCACGGCATTCGGCGGCACGCTGCCGTTGCTGAA
GTGCATCCATCTGTGGTCTGCCATGTCGACTGATAACT
BS09136.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:21:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32633-PA | 858 | CG32633-RA | 1..858 | 874..17 | 4290 | 100 | Minus |
CG31086-PA | 447 | CG31086-RA | 322..419 | 553..456 | 290 | 91.8 | Minus |
CG31086-PA | 447 | CG31086-RA | 52..173 | 823..702 | 260 | 88.5 | Minus |
CG31086-PA | 447 | CG31086-RA | 213..272 | 662..603 | 150 | 90 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:58:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32633-RB | 956 | CG32633-RB | 41..899 | 874..16 | 4295 | 100 | Minus |
CG32633-RA | 1441 | CG32633-RA | 41..899 | 874..16 | 4295 | 100 | Minus |
CG31323-RA | 3489 | CG31323-RA | 1922..2336 | 865..451 | 1070 | 84.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:58:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13561963..13562817 | 870..16 | 4275 | 100 | Minus |
3R | 32079331 | 3R | 26185782..26186154 | 823..451 | 1055 | 85.5 | Minus |
2R | 25286936 | 2R | 12950953..12951023 | 51..121 | 190 | 84.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:58:28 has no hits.
BS09136.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:00:21 Download gff for
BS09136.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32633-PA | 1..858 | 17..874 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:07:09 Download gff for
BS09136.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32633-PA | 1..858 | 17..874 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:25:28 Download gff for
BS09136.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32633-RA | 36..899 | 16..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:29 Download gff for
BS09136.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32633-RA | 36..899 | 16..881 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:29 Download gff for
BS09136.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13561963..13562817 | 16..870 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:25:28 Download gff for
BS09136.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13455996..13456850 | 16..870 | 100 | | Minus |
BS09136.5prime Sequence
888 bp (791 high quality bases) assembled on 2006-01-24
> BS09136.5prime
GAAGTTATCAGTCGACATGGCAGACCACAGATGGATGCACTTCAGCAACG
GCAGCGTGCCGCCGAATGCCGTGGTGGCTGGTCACGATTCGGACGGGGAC
ACCATCTACGTGGGCCGTGCCTTCTTCTCCAACGACATGCTGCCGGCGAA
GGTGATTCCCAACAAGGGCAAGGCCTACGTGGCGTATGCGCGCGAGGAGC
ACGAGCTGGAGAACTACGAGGTGCTTTCCGGCTACAACTACGAGTGGCTG
TCGGCGGAGAACGGGGAGGTGCCGCCGGGCGCCGTCAAAGTTGGTCGGAA
TGTGGACGGCGAGTATTTGTATGCGGGCAGGGGTTATCATGCCGGCAGCT
TAACCATGGGCAAGGTGCATCCATCCCACGGCTGCCTGTATATTCCCTAC
GATTCCGATGAGGTTAAGATCTTTGCCTACGAGGTGCTGTGCCAGCCGGA
ACGTTGGATCGACACCACCGCAACAAATATTCCGGATGGAGCTCTGGTTG
CTGGGCACGATTCCAACGGGGACACCATCTACGTGGGCAGGGTGTTCCGC
AATGGTGATCTGCTGCCAGCCAAAGTGGTGCCGGCGAAGGGGAAAGCCTA
TGCCGCCTATGCCCAGGCGGAGCACGAGCTCACCGACGTCCAGGTGCTGA
CGGGATCCGGATTCCGTTGGGTTCCGGCCTCGCACGGAAATGTGGCTCCC
GGAGCCCTGTCCTCCGGTCCGAATGTCGACGGGGAGCCCCTCTACGTCGG
CAGGGCCATCTACTGCGACAGCTTGAGTGTGGGGCAGATCCATCCCTCGC
ACGGCTGCATCTACATCCCATTCGGTGGCGAGGAGGTGCGTCTGGAGAAT
TACGAGGTTCTGGTGAGGATCTAGAAGCTTTCTAGACC
BS09136.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:21:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32633-PA | 858 | CG32633-RA | 1..858 | 17..874 | 4240 | 99.7 | Plus |
CG31086-PA | 447 | CG31086-RA | 322..419 | 338..435 | 290 | 91.8 | Plus |
CG31086-PA | 447 | CG31086-RA | 52..173 | 68..189 | 260 | 88.5 | Plus |
CG31086-PA | 447 | CG31086-RA | 213..272 | 229..288 | 150 | 90 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:27:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32633-RB | 956 | CG32633-RB | 41..899 | 17..875 | 4265 | 99.8 | Plus |
CG32633-RA | 1441 | CG32633-RA | 41..899 | 17..875 | 4265 | 99.8 | Plus |
CG31323-RA | 3489 | CG31323-RA | 1922..2336 | 26..440 | 1070 | 84.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:27:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13561963..13562817 | 21..875 | 4245 | 99.8 | Plus |
3R | 32079331 | 3R | 26185782..26186154 | 68..440 | 1055 | 85.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:27:31 has no hits.
BS09136.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:00:22 Download gff for
BS09136.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32633-PA | 1..858 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:07:11 Download gff for
BS09136.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32633-PA | 1..858 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:57:12 Download gff for
BS09136.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32633-RA | 36..899 | 10..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:20:43 Download gff for
BS09136.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32633-RA | 36..899 | 10..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:20:43 Download gff for
BS09136.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13561963..13562817 | 21..875 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:57:12 Download gff for
BS09136.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13455996..13456850 | 21..875 | 99 | | Plus |
BS09136.complete Sequence
890 bp (890 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636358
> BS09136.complete
GAAGTTATCAGTCGACATGGCAGACCACAGATGGATGCACTTCAGCAACG
GCAGCGTGCCGCCGAATGCCGTGGTGGCTGGTCACGATTCGGACGGGGAC
ACCATCTACGTGGGCCGTGCCTTCTTCTCCAACGACATGCTGCCGGCGAA
GGTGATTCCCAACAAGGGCAAGGCCTACGTGGCGTATGCGCGCGAGGAGC
ACGAGCTGGAGAACTACGAGGTGCTTTCCGGCTACAACTACGAGTGGCTG
TCGGCGGAGAACGGGGAGGTGCCGCCGGGCGCCGTCAAAGTTGGTCGGAA
TGTGGACGGCGAGTATTTGTATGCGGGCAGGGGTTATCATGCCGGCAGCT
TAACCATGGGCAAGGTGCATCCATCCCACGGCTGCCTGTATATTCCCTAC
GATTCCGATGAGGTTAAGATCTTTGCCTACGAGGTGCTGTGCCAGCCGGA
ACGTTGGATCGACACCACCGCAACAAATATTCCGGATGGAGCTCTGGTTG
CTGGGCACGATTCCAACGGGGACACCATCTACGTGGGCAGGGTGTTCCGC
AATGGTGATCTGCTGCCAGCCAAAGTGGTGCCGGCGAAGGGGAAAGCCTA
TGCCGCCTATGCCCAGGCGGAGCACGAGCTCACCGACGTCCAGGTGCTGA
CGGGATCCGGATTCCGTTGGGTTCCGGCCTCGCACGGAAATGTGGCTCCC
GGAGCCCTGTCCTCCGGTCCGAATGTCGACGGGGAGCCCCTCTACGTCGG
CAGGGCCATCTACTGCGACAGCTTGAGTGTGGGCAAGATCCATCCCTCGC
ACGGCTGCATCTACATCCCATTCGGTGGCGAGGAGGTGCGTCTGGAGAAT
TACGAGGTTCTGGTGAGGATCTAGAAGCTTTCTAGACCAT
BS09136.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:04:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32633-RB | 858 | CG32633-PB | 1..858 | 17..874 | 4290 | 100 | Plus |
CG32633-RA | 858 | CG32633-PA | 1..858 | 17..874 | 4290 | 100 | Plus |
CG31086-RB | 447 | CG31086-PB | 52..424 | 68..440 | 1055 | 85.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:04:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32633-RB | 956 | CG32633-RB | 41..899 | 17..875 | 4295 | 100 | Plus |
CG32633-RA | 1441 | CG32633-RA | 41..899 | 17..875 | 4295 | 100 | Plus |
CG31323-RA | 3489 | CG31323-RA | 1964..2336 | 68..440 | 1055 | 85.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:04:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13561963..13562817 | 21..875 | 4275 | 100 | Plus |
3R | 32079331 | 3R | 26185782..26186154 | 68..440 | 1055 | 85.5 | Plus |
2R | 25286936 | 2R | 12950953..12951023 | 840..770 | 190 | 84.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:04:38 has no hits.
BS09136.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:01 Download gff for
BS09136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32633-RA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:37 Download gff for
BS09136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32633-RA | 33..896 | 10..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:54 Download gff for
BS09136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32633-RA | 41..898 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:02 Download gff for
BS09136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32633-RA | 33..896 | 10..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:05 Download gff for
BS09136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32633-RA | 41..898 | 17..874 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:34:05 Download gff for
BS09136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13561957..13562816 | 17..874 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:54 Download gff for
BS09136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13455990..13456849 | 17..874 | 99 | | Plus |
BS09136.pep Sequence
Translation from 16 to 873
> BS09136.pep
MADHRWMHFSNGSVPPNAVVAGHDSDGDTIYVGRAFFSNDMLPAKVIPNK
GKAYVAYAREEHELENYEVLSGYNYEWLSAENGEVPPGAVKVGRNVDGEY
LYAGRGYHAGSLTMGKVHPSHGCLYIPYDSDEVKIFAYEVLCQPERWIDT
TATNIPDGALVAGHDSNGDTIYVGRVFRNGDLLPAKVVPAKGKAYAAYAQ
AEHELTDVQVLTGSGFRWVPASHGNVAPGALSSGPNVDGEPLYVGRAIYC
DSLSVGKIHPSHGCIYIPFGGEEVRLENYEVLVRI*
BS09136.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:44:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32633-PB | 285 | CG32633-PB | 1..285 | 1..285 | 1541 | 100 | Plus |
CG32633-PA | 285 | CG32633-PA | 1..285 | 1..285 | 1541 | 100 | Plus |
CG13321-PB | 286 | CG13321-PB | 1..285 | 1..284 | 811 | 53.3 | Plus |
CG13321-PA | 286 | CG13321-PA | 1..285 | 1..284 | 811 | 53.3 | Plus |
CG44250-PB | 286 | CG44250-PB | 2..285 | 3..284 | 734 | 49.8 | Plus |