Clone BS09137 Report

Search the DGRC for BS09137

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:91
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptCG4572-RA
Protein status:BS09137.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09137.3prime Sequence

835 bp (783 high quality bases) assembled on 2006-01-24

> BS09137.3prime
ATGGTCTAGAAAGCTTCTAGTGCTTGTAATGAGTAAGGTGATCAATCATC
ATGTACAGCCACTTGGGCTGATCGTGAGGAGCCATGTGCCCGGCATTGCG
GACCATGATCTCCACAAGATGTCCGGCGTGCTTGACATAGCCGGCCACTT
CCTTCCCAACGCGCCACACTTCGCGGGGAGCCACCTTGTACTTGTCCGAG
CCGGGGAACTTTAGTTGGTTGAGATAATTGCGCGTCAGTGGATAGGCAAC
AATAATGTCTAGCTGCCCGCTGTAGATGCACACAGTATAGTGGGCCAGCA
GTTCGGCTATCCACGGGGCCACCGAGTCCATGATATCCTTCTTCAAGTGA
AGTTCCACCTTGTTCTCCTTGTCCAGATCATGGAATGTCTTATTGCCCAC
ATGAATTGCCCGCCGAGTGGCGCCCGCCTGCAGAAATTCGCCCAAGTTGG
CGCCATCATCATCATGCGTCTTCAAGTAGTTGTAGTACCAGTTGTATCCA
GTAAGGTTGCTGAACAGTGAGCCATTGGTAAGGTCCCCGTTGATTAGGGA
ATCAAATACGTCGAAGGCGCACTCCATGTCGTGACTCTTAATGCATTCAG
CACCCTTTGCCTCGGCATCGTGGAAACTCTGCAGTCCGTGCTCGTCGATC
AGGCCCAGCTGGTAGAGATAGTCACCGTACTTCAGCTGATGCAGCGGATC
CGAGAGACCATTTCCGATGGCCACGCCCTTGAGCGGCACATAGACGCGGG
TCTCTATGGCATTTTGTACCTTGTGGATGTGGTAAGCCAGGGCGGGAACG
TATTTTCCGGCATAGGACTCGCCGGTGACCCAGAA

BS09137.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:21:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG4572-PA 1449 CG4572-RA 631..1449 835..17 4095 100 Minus
CG4572-PB 1449 CG4572-RB 631..1449 835..17 4095 100 Minus
CG4572-PC 1449 CG4572-RC 631..1449 835..17 4095 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4572-RD 1744 CG4572-RD 721..1539 835..17 4095 100 Minus
CG4572-RB 1877 CG4572-RB 854..1672 835..17 4095 100 Minus
CG4572-RA 1793 CG4572-RA 770..1588 835..17 4095 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:45:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19862722..19863540 17..835 4095 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:46:00 has no hits.

BS09137.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:00:24 Download gff for BS09137.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4572-PC 633..1449 17..833 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:07:13 Download gff for BS09137.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4572-PC 633..1449 17..833 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:29:45 Download gff for BS09137.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4572-RA 770..1588 17..835 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:32:53 Download gff for BS09137.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4572-RA 770..1588 17..835 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:32:53 Download gff for BS09137.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19862722..19863540 17..835 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:29:45 Download gff for BS09137.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15688444..15689262 17..835 100   Plus

BS09137.5prime Sequence

889 bp (757 high quality bases) assembled on 2006-01-24

> BS09137.5prime
GAAGTTATCAGTCGACATGAAAACTGCAACTCATTGCGCATTTTTAATTA
TCGCGACTATAGTCGCAATAAGCGGAGCAAAAGGAGTAGAGGGGGAACGC
CCCTACAGGCGGAGCTTCATCAATCCGTATCCACGCTACCAGTTCTTTGA
CGATGGTGTCGATCCCGGGGAGCCCCTGTTCCTGACGCCCCTGATCAACA
ATGCTTCGATGAGCAAGCAAGAGGTTCAAAAGCTGGCCCGCGTCGTAGGC
TCCCAGTTCCATGGCGTTGAGAGCTACTCCGGCTATTTGACCGTGGACCC
TGGCTTCAAATCCAACATGTTCTTCTGGTACTTCCCCGCCGAGCAGGAGC
CGGAATATGCGCCAGTGGTCCTGTGGCTTCAGGGTGGACCAGGTGCCTCC
TCGCTCTTCGGTTTGTTCACAGAGAATGGACCACTAGAGTTGGATGGTCA
TGGGAAGCTTCAGAAACGCAACTATACCTGGAGCAAGACACACAATCTCA
TCTACATTGACAATCCCGTGGGCACTGGCTTTAGTTTTACAGAGAACGAT
GCCGGCTATGCTACGAACGAGAAGGATGTGGGCCGCAATCTGCACGAGGC
TGTGATGCAGCTGTACGAACTCTTCGAGTGGAGCAACTCCTCTGGTTTCT
GGGTCACCGGCGAGTCCTATGCCGGAAAATACGTTCCCGCCCTGGCTTAC
CACATCCACAAGGTACAAAATGCCATAGAGACCCGCGTCTATGTGCCGCT
CAAGGGCGTGGCCATCGGAAATGGTCTCTCGGATCCGCTGCATCAGCTGA
AGTACGGTGACTATCTCTACCAGCTGGGCCTGATCGACGAGCACGGACTG
CAGAGTTTCCACGATGCCGAGGCAAAGGGTGCTGAATGC

BS09137.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4572-PA 1449 CG4572-RA 1..873 17..889 4365 100 Plus
CG4572-PB 1449 CG4572-RB 1..873 17..889 4365 100 Plus
CG4572-PC 1449 CG4572-RC 1..873 17..889 4365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG4572-RD 1744 CG4572-RD 91..963 17..889 4365 100 Plus
CG4572-RB 1877 CG4572-RB 224..1096 17..889 4365 100 Plus
CG4572-RA 1793 CG4572-RA 140..1012 17..889 4365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:18:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19863298..19864170 889..17 4365 100 Minus
Blast to na_te.dros performed on 2015-02-11 13:18:55 has no hits.

BS09137.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:00:25 Download gff for BS09137.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4572-PC 1..873 17..889 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:07:14 Download gff for BS09137.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4572-PC 1..873 17..889 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:21:50 Download gff for BS09137.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4572-RA 130..1012 9..889 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:46:31 Download gff for BS09137.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4572-RA 130..1012 9..889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:46:31 Download gff for BS09137.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19863298..19864180 9..889 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:21:50 Download gff for BS09137.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15689020..15689902 9..889 99   Minus

BS09137.complete Sequence

1481 bp (1481 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636359

> BS09137.complete
GAAGTTATCAGTCGACATGAAAACTGCAACTCATTGCGCATTTTTAATTA
TCGCGACTATAGTCGCAATAAGCGGAGCAAAAGGAGTAGAGGGGGAACGC
CCCTACAGGCGGAGCTTCATCAATCCGTATCCACGCTACCAGTTCTTTGA
CGATGGTGTCGATCCCGGGGAGCCCCTGTTCCTGACGCCCCTGATCAACA
ATGCTTCGATGAGCAAGCAAGAGGTTCAAAAGCTGGCCCGCGTCGTAGGC
TCCCAGTTCCATGGCGTTGAGAGCTACTCCGGCTATTTGACCGTGGACCC
TGGCTTCAAATCCAACATGTTCTTCTGGTACTTCCCCGCCGAGCAGGAGC
CGGAATATGCGCCAGTGGTCCTGTGGCTTCAGGGTGGACCAGGTGCCTCC
TCGCTCTTCGGTTTGTTCACAGAGAATGGACCACTAGAGTTGGATGGTCA
TGGGAAGCTTCAGAAACGCAACTATACCTGGAGCAAGACACACAATCTCA
TCTACATTGACAATCCCGTGGGCACTGGCTTTAGTTTTACAGAGAACGAT
GCCGGCTATGCTACGAACGAGAAGGATGTGGGCCGCAATCTGCACGAGGC
TGTGATGCAGCTGTACGAACTCTTCGAGTGGAGCAACTCCTCTGGTTTCT
GGGTCACCGGCGAGTCCTATGCCGGAAAATACGTTCCCGCCCTGGCTTAC
CACATCCACAAGGTACAAAATGCCATAGAGACCCGCGTCTATGTGCCGCT
CAAGGGCGTGGCCATCGGAAATGGTCTCTCGGATCCGCTGCATCAGCTGA
AGTACGGTGACTATCTCTACCAGCTGGGCCTGATCGACGAGCACGGACTG
CAGAGTTTCCACGATGCCGAGGCAAAGGGTGCTGAATGCATTAAGAGTCA
CGACATGGAGTGCGCCTTCGACGTATTTGATTCCCTAATCAACGGGGACC
TTACCAATGGCTCACTGTTCAGCAACCTTACTGGATACAACTGGTACTAC
AACTACTTGAAGACGCATGATGATGATGGCGCCAACTTGGGCGAATTTCT
GCAGGCGGGCGCCACTCGGCGGGCAATTCATGTGGGCAATAAGACATTCC
ATGATCTGGACAAGGAGAACAAGGTGGAACTTCACTTGAAGAAGGATATC
ATGGACTCGGTGGCCCCGTGGATAGCCGAACTGCTGGCCCACTATACTGT
GTGCATCTACAGCGGGCAGCTAGACATTATTGTTGCCTATCCACTGACGC
GCAATTATCTCAACCAACTAAAGTTCCCCGGCTCGGACAAGTACAAGGTG
GCTCCCCGCGAAGTGTGGCGCGTTGGGAAGGAAGTGGCCGGCTATGTCAA
GCACGCCGGACATCTTGTGGAGATCATGGTCCGCAATGCCGGGCACATGG
CTCCTCACGATCAGCCCAAGTGGCTGTACATGATGATTGATCACCTTACT
CATTACAAGCACTAGAAGCTTTCTAGACCAT

BS09137.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:17:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG4572-RD 1449 CG4572-PD 1..1449 17..1465 7245 100 Plus
CG4572-RB 1449 CG4572-PB 1..1449 17..1465 7245 100 Plus
CG4572-RA 1449 CG4572-PA 1..1449 17..1465 7245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4572-RD 1744 CG4572-RD 91..1539 17..1465 7245 100 Plus
CG4572-RB 1877 CG4572-RB 224..1672 17..1465 7245 100 Plus
CG4572-RA 1793 CG4572-RA 140..1588 17..1465 7245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:17:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19862722..19864170 1465..17 7245 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:17:47 has no hits.

BS09137.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:03 Download gff for BS09137.complete
Subject Subject Range Query Range Percent Splice Strand
CG4572-RC 1..1449 17..1465 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:39 Download gff for BS09137.complete
Subject Subject Range Query Range Percent Splice Strand
CG4572-RC 84..1542 9..1465 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:59:08 Download gff for BS09137.complete
Subject Subject Range Query Range Percent Splice Strand
CG4572-RA 140..1588 17..1465 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:03 Download gff for BS09137.complete
Subject Subject Range Query Range Percent Splice Strand
CG4572-RC 84..1542 9..1465 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:38:24 Download gff for BS09137.complete
Subject Subject Range Query Range Percent Splice Strand
CG4572-RA 140..1588 17..1465 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:38:24 Download gff for BS09137.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19862722..19864170 17..1465 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:59:08 Download gff for BS09137.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15688444..15689892 17..1465 100   Minus

BS09137.pep Sequence

Translation from 16 to 1464

> BS09137.pep
MKTATHCAFLIIATIVAISGAKGVEGERPYRRSFINPYPRYQFFDDGVDP
GEPLFLTPLINNASMSKQEVQKLARVVGSQFHGVESYSGYLTVDPGFKSN
MFFWYFPAEQEPEYAPVVLWLQGGPGASSLFGLFTENGPLELDGHGKLQK
RNYTWSKTHNLIYIDNPVGTGFSFTENDAGYATNEKDVGRNLHEAVMQLY
ELFEWSNSSGFWVTGESYAGKYVPALAYHIHKVQNAIETRVYVPLKGVAI
GNGLSDPLHQLKYGDYLYQLGLIDEHGLQSFHDAEAKGAECIKSHDMECA
FDVFDSLINGDLTNGSLFSNLTGYNWYYNYLKTHDDDGANLGEFLQAGAT
RRAIHVGNKTFHDLDKENKVELHLKKDIMDSVAPWIAELLAHYTVCIYSG
QLDIIVAYPLTRNYLNQLKFPGSDKYKVAPREVWRVGKEVAGYVKHAGHL
VEIMVRNAGHMAPHDQPKWLYMMIDHLTHYKH*

BS09137.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:41:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG4572-PD 482 CG4572-PD 1..482 1..482 2612 100 Plus
CG4572-PB 482 CG4572-PB 1..482 1..482 2612 100 Plus
CG4572-PA 482 CG4572-PA 1..482 1..482 2612 100 Plus
CG32483-PA 439 CG32483-PA 17..438 82..480 414 29 Plus
CG31821-PB 427 CG31821-PB 32..421 89..480 393 30.7 Plus