Clone Sequence Records
BS09140.3prime Sequence
880 bp (810 high quality bases) assembled on 2006-01-24
> BS09140.3prime
ATGGTCTAGAATGCTTCTACAGCATCAGTCGCGAGCGCGACTTCTTTAGC
CGCCCGGTGGCACCGCCCAGGCCATCGCCGTTCCAGGACTTGGACTTGGC
GCGAAAGTGGCGATAGGCCTCGTTGTAGGCGGGATCCAGCATGGTGCGGT
AGGCATGTGGTTCGCACAGCTCAACGTGCGACTCGAAGAACTCCTTGTAG
CCGTTGTGCAGCAGATAGATCTCGGGATAGTGCAACGCCGGATAGGCGTT
GGTATTCCTCTCGCGATCCAGATTACGCAGGAAGCGGGACATTTTCGGTC
CACGCTCCGAGGAGAATTCGCAGTGGAAGATAATGATGTTGCGCTTGTGT
CCCGATTCGGCGTTCTGCTGCTGCTGCAGCTCAGTCTGTTGGACGGTGAG
GAACTCATCGAGGATCTGCTCGGTGGTGTACAGGTTCTTGGCTCCCTCGA
TGTGGCCGCCCTCGAATTCGTAGGGGTAGCGGCAGTCGATGATGCGGTAG
CTGGCCACCTTATCGCTGAACTCGCCCTTAAGCAGGCGAGCCACTGTTTC
GCTGGAGATGCTCTTCAGATCCCGATGACGACCCTCCATCAGGGGCAGGG
CATAGGCTTTGCTGAAGTCGCCGATTAGCTCGGGCTCGTTGCGGTTCTCG
GAGCGGGCCAGGGCGGACATGATCTCGGCGTCGTTCAGGGACATGCACTT
CCTCAGTGGAGGGGGGTGGCTAATCGTGACCTGGCTGAGTGGGCTGGGTG
CGGGGCAGTTCTCCTTCTCAACGGCGGCGCAGCGATGGCGTTTGCTCTGG
ATGGGCGAGCAGTTGGCCGATGCTGGCGGTTCCGGGCGCTTTGAAGCATC
CCGGGCAGTCTCTGGGGTCTTTGGTGGGGG
BS09140.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:21:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1395-PA | 1440 | stg-RA | 616..1440 | 841..17 | 4125 | 100 | Minus |
| CG1395-PA | 1440 | stg-RA | 580..609 | 877..848 | 150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:45:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stg-RB | 2747 | CG1395-RB | 1452..2312 | 877..17 | 4260 | 99.8 | Minus |
| stg-RA | 2589 | CG1395-RA | 977..1837 | 877..17 | 4260 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:45:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29252578..29253438 | 17..877 | 4230 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:45:06 has no hits.
BS09140.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:00:30 Download gff for
BS09140.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stg-PA | 576..1440 | 17..880 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:07:22 Download gff for
BS09140.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1395-PA | 576..1440 | 17..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:14:51 Download gff for
BS09140.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stg-RA | 1448..2315 | 10..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:04:15 Download gff for
BS09140.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stg-RA | 973..1840 | 10..880 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:04:15 Download gff for
BS09140.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29252575..29253441 | 10..880 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:14:51 Download gff for
BS09140.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25078297..25079163 | 10..880 | 99 | | Plus |
BS09140.5prime Sequence
885 bp (794 high quality bases) assembled on 2006-01-24
> BS09140.5prime
GAAGTTATCAGTCGACATGCTGTGGGAAACTATTGTGGAGGAAAACAACT
GCAGCATGGATTGCAATATCAGTAATAACACCAGCAGTTCGAGTAGCATC
AACAAAATGAGTGGATCTCGTCGTGCTCGCCGTTCCCTGGAACTGATGAG
CATGGACCAGGAGGAGCTGTCGTTCTACGACGACGACGTTGTGCCCCAGG
ATCAGCAGCGATCGGCCAGTCCGGAGCTGATGGGTCTGCTCTCGCCGGAG
GGCTCGCCCCAGCGCTTCCAGATCGTCCGCCAGCCGAAAATTCTGCCAGC
TATGGGAGTATCAAGTGATCACACGCCGGCGCGCAGCTTCCGCATCTTCA
ACAGCCTGTCCTCCACATGCTCCATGGAGTCCTCCATGGACGATGAGTAC
ATGGAGCTCTTCGAGATGGAGTCGCAGAGCCAACAGACCGCCCTGGGCTT
CCCCAGTGGCCTAAACTCGCTGATCAGCGGCCAGATCAAGGAGCAGCCTG
CTGCCAAATCGCCAGCGGGTCTGTCCATGCGCCGCCCTTCGGTCAGAAGG
TGCCTCAGCATGACGGAGAGCAACACCAACAGCACCACCACCCCACCACC
AAAGACCCCAGAGACTGCCCGGGATTGCTTCAAGCGCCCGGAACCGCCAG
CATCGGCCAACTGCTCGCCCATCCAGAGCAAACGCCATCGCTGCGCCGCC
GTTGAGAAGGAGAACTGCCCCGCACCCAGCCCACTCAGCCAGGTCACGAT
TAGCCACCCCCCTCCACTGAGGAAGTGCATGTCCCTGAACGACGCCGAGA
TCATGTCCGCCCTGGCCCGCTCCGAGAACCCGCACGAGCCCGAGCTAATC
GGCGACTTCAGCAAAGCCTATGCCCTGCCCCTGAT
BS09140.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:21:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1395-PA | 1440 | stg-RA | 1..814 | 17..830 | 4070 | 100 | Plus |
| CG1395-PA | 1440 | stg-RA | 818..869 | 834..885 | 260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:25:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stg-RB | 2747 | CG1395-RB | 873..1741 | 17..885 | 4300 | 99.8 | Plus |
| stg-RA | 2589 | CG1395-RA | 398..1266 | 17..885 | 4300 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:25:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29253149..29253964 | 885..70 | 4035 | 99.6 | Minus |
| 3R | 32079331 | 3R | 29254873..29254928 | 72..17 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:25:25 has no hits.
BS09140.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:00:31 Download gff for
BS09140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stg-PA | 1..869 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:07:24 Download gff for
BS09140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1395-PA | 1..869 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:13:45 Download gff for
BS09140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stg-RA | 866..1741 | 9..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:15:35 Download gff for
BS09140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stg-RA | 391..1266 | 9..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:15:35 Download gff for
BS09140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29253149..29253961 | 73..885 | 99 | <- | Minus |
| 3R | 29254873..29254935 | 9..72 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:13:45 Download gff for
BS09140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25078871..25079683 | 73..885 | 99 | <- | Minus |
| arm_3R | 25080595..25080657 | 9..72 | 93 | | Minus |
BS09140.complete Sequence
1472 bp assembled on 2008-08-15
GenBank Submission: FJ636360
> BS09140.complete
GAAGTTATCAGTCGACATGCTGTGGGAAACTATTGTGGAGGAAAACAACT
GCAGCATGGATTGCAATATCAGTAATAACACCAGCAGTTCGAGTAGCATC
AACAAAATGAGTGGATCTCGTCGTGCTCGCCGTTCCCTGGAACTGATGAG
CATGGACCAGGAGGAGCTGTCGTTCTACGACGACGACGTTGTGCCCCAGG
ATCAGCAGCGATCGGCCAGTCCGGAGCTGATGGGTCTGCTCTCGCCGGAG
GGCTCGCCCCAGCGCTTCCAGATCGTCCGCCAGCCGAAAATTCTGCCAGC
TATGGGAGTATCAAGTGATCACACGCCGGCGCGCAGCTTCCGCATCTTCA
ACAGCCTGTCCTCCACATGCTCCATGGAGTCCTCCATGGACGATGAGTAC
ATGGAGCTCTTCGAGATGGAGTCGCAGAGCCAACAGACCGCCCTGGGCTT
CCCCAGTGGCCTAAACTCGCTGATCAGCGGCCAGATCAAGGAGCAGCCTG
CTGCCAAATCGCCAGCGGGTCTGTCCATGCGCCGCCCTTCGGTCAGAAGG
TGCCTCAGCATGACGGAGAGCAACACCAACAGCACCACCACCCCACCACC
AAAGACCCCAGAGACTGCCCGGGATTGCTTCAAGCGCCCGGAACCGCCAG
CATCGGCCAACTGCTCGCCCATCCAGAGCAAACGCCATCGCTGCGCCGCC
GTTGAGAAGGAGAACTGCCCCGCACCCAGCCCACTCAGCCAGGTCACGAT
TAGCCACCCCCCTCCACTGAGGAAGTGCATGTCCCTGAACGACGCCGAGA
TCATGTCCGCCCTGGCCCGCTCCGAGAACCGCAACGAGCCCGAGCTAATC
GGCGACTTCAGCAAAGCCTATGCCCTGCCCCTGATGGAGGGTCGTCATCG
GGATCTGAAGAGCATCTCCAGCGAAACAGTGGCTCGCCTGCTTAAGGGCG
AGTTCAGCGATAAGGTGGCCAGCTACCGCATCATCGACTGCCGCTACCCC
TACGAATTCGAGGGCGGCCACATCGAGGGAGCCAAGAACCTGTACACCAC
CGAGCAGATCCTCGATGAGTTCCTCACCGTCCAACAGACTGAGCTGCAGC
AGCAGCAGAACGCCGAATCGGGACACAAGCGCAACATCATTATCTTCCAC
TGCGAATTCTCCTCGGAGCGTGGACCGAAAATGTCCCGCTTCCTGCGTAA
TCTGGATCGCGAGAGGAATACCAACGCCTATCCGGCGTTGCACTATCCCG
AGATCTATCTGCTGCACAACGGCTACAAGGAGTTCTTCGAGTCGCACGTT
GAGCTGTGCGAACCACATGCCTACCGCACCATGCTGGATCCCGCCTACAA
CGAGGCCTATCGCCACTTTCGCGCCAAGTCCAAGTCCTGGAACGGCGATG
GCCTGGGCGGTGCCACCGGGCGGCTAAAGAAGTCGCGCTCGCGACTGATG
CTGTAGAAGCATTCTAGACCAT
BS09140.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stg-RB | 1440 | CG1395-PB | 1..1440 | 17..1456 | 7200 | 100 | Plus |
| stg-RA | 1440 | CG1395-PA | 1..1440 | 17..1456 | 7200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stg-RB | 2747 | CG1395-RB | 873..2312 | 17..1456 | 7200 | 100 | Plus |
| stg-RA | 2589 | CG1395-RA | 398..1837 | 17..1456 | 7200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:35:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29252578..29253964 | 1456..70 | 6935 | 100 | Minus |
| 3R | 32079331 | 3R | 29254873..29254928 | 72..17 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:35:51 has no hits.
BS09140.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:56:27 Download gff for
BS09140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stg-RA | 846..2295 | 9..1463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:22 Download gff for
BS09140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stg-RA | 873..2312 | 17..1456 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:57 Download gff for
BS09140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stg-RA | 853..2292 | 17..1456 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:57 Download gff for
BS09140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stg-RA | 398..1837 | 17..1456 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:57 Download gff for
BS09140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29252578..29253961 | 73..1456 | 100 | <- | Minus |
| 3R | 29254873..29254928 | 17..72 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:22 Download gff for
BS09140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25078300..25079683 | 73..1456 | 100 | <- | Minus |
| arm_3R | 25080595..25080650 | 17..72 | 100 | | Minus |
BS09140.pep Sequence
Translation from 16 to 1455
> BS09140.pep
MLWETIVEENNCSMDCNISNNTSSSSSINKMSGSRRARRSLELMSMDQEE
LSFYDDDVVPQDQQRSASPELMGLLSPEGSPQRFQIVRQPKILPAMGVSS
DHTPARSFRIFNSLSSTCSMESSMDDEYMELFEMESQSQQTALGFPSGLN
SLISGQIKEQPAAKSPAGLSMRRPSVRRCLSMTESNTNSTTTPPPKTPET
ARDCFKRPEPPASANCSPIQSKRHRCAAVEKENCPAPSPLSQVTISHPPP
LRKCMSLNDAEIMSALARSENRNEPELIGDFSKAYALPLMEGRHRDLKSI
SSETVARLLKGEFSDKVASYRIIDCRYPYEFEGGHIEGAKNLYTTEQILD
EFLTVQQTELQQQQNAESGHKRNIIIFHCEFSSERGPKMSRFLRNLDRER
NTNAYPALHYPEIYLLHNGYKEFFESHVELCEPHAYRTMLDPAYNEAYRH
FRAKSKSWNGDGLGGATGRLKKSRSRLML*
BS09140.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:40:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stg-PB | 479 | CG1395-PB | 1..479 | 1..479 | 2504 | 100 | Plus |
| stg-PA | 479 | CG1395-PA | 1..479 | 1..479 | 2504 | 100 | Plus |
| twe-PD | 426 | CG4965-PD | 101..423 | 107..478 | 711 | 45.1 | Plus |
| twe-PC | 426 | CG4965-PC | 101..423 | 107..478 | 711 | 45.1 | Plus |
| twe-PB | 426 | CG4965-PB | 101..423 | 107..478 | 711 | 45.1 | Plus |
