Clone BS09152 Report

Search the DGRC for BS09152

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:91
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG5568-RA
Protein status:BS09152.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09152.3prime Sequence

938 bp (913 high quality bases) assembled on 2006-01-24

> BS09152.3prime
ATGGTCTAGAAAGCTTCTAATTCTTCTCCATAATTCGTAAAAACTCAGCT
TTTGTGGCCGCTCTGTTTGCTTTTCTATTGCCACTCTGAATAATGTGATC
CACAATCAAAGCTCCTCCATTCAACTGCTTAAATTTGGCAGGTATACGTT
TCCTCACATACTCCACAACATCCTGGGCCTCTAGTTGGGTTCCTTGTTTC
TTGACCACTGAAGCGGCTGCCTTATCTCCATAAACGGGATCCCAAATGCC
AAAGACACAAGCTTCCACAACATTTGGCATTTCAGCGATGACACTTTCAA
TCTCGCTGGGGTAATACATGATGGTCTGATACTTGAGCATATCCTTCAAG
CGATCGATAATGAACAAATATCCATCCTCGTCCATGTAGCCCAGGTCCCC
GGTGTGAAACCAGTTCTCCGAGTCCTGCATCTTCTTCGTTTCTTCCGGAT
TCTTGTAGTAACCAGGCCATTTCTGACCATTATTGAAGCATATCTCGCCC
ACGACATTGGGTCCTTGTGCTTCACCCAGCTCGTTGACTATTTTGATTTG
AATGCCTCTAACCGGACGACCCACTGAATTGGGTTTCTCATCGAAGTTGA
AGTTTAGGCATCCGGGGCTGTTCAACTCGGTTAGTGTATAACTGAAATTT
ACACATTCGTTGCTTAGACGGCTGCGAATTTTGTTCTGGACTTCCAGTGA
GCAGTTTGATCCGCCGTAAAAGAAATACTTCACGGATGATAGGTCCGCCG
CATAGAATTCCGGGCAATTGGACAGCATCGCCAATTGCGAGGAACTTACG
AACACCATCGATATTCGATACTTCTCAATTAGGCCACACAAATTGGCAGG
ATCAAAGTCACAATCTTCAATTATACTAGTCAAGCTAAACACGGCTGCAT
TGATGGTCATCGTGATGCCTGATGCCCAATCCAAAGTG

BS09152.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:21:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5568-PA 1638 CG5568-RA 717..1638 938..17 4610 100 Minus
CG18586-PA 1695 CG18586-RA 1352..1442 360..270 205 89 Minus
CG18586-PA 1695 CG18586-RA 1117..1146 595..566 150 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:01:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5568-RA 1911 CG5568-RA 814..1735 938..17 4610 100 Minus
CG18586-RC 2020 CG18586-RC 1070..1893 880..57 1390 78.2 Minus
CG18586-RB 1817 CG18586-RB 876..1699 880..57 1390 78.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5872421..5873342 938..17 4610 100 Minus
3L 28110227 3L 5874516..5875339 880..57 1375 77.8 Minus
3R 32079331 3R 19771523..19771837 98..412 300 73 Plus
3R 32079331 3R 19775581..19775895 98..412 300 73 Plus
3R 32079331 3R 19782634..19782794 415..255 235 76.4 Minus
Blast to na_te.dros performed on 2015-02-10 22:01:53 has no hits.

BS09152.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:00:52 Download gff for BS09152.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5568-PA 717..1638 17..938 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:07:51 Download gff for BS09152.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5568-PA 717..1638 17..938 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:23:22 Download gff for BS09152.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5568-RA 814..1738 10..938 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:13 Download gff for BS09152.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5568-RA 814..1738 10..938 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:13 Download gff for BS09152.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5872421..5873345 10..938 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:23:22 Download gff for BS09152.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5865521..5866445 10..938 99   Minus

BS09152.5prime Sequence

884 bp (839 high quality bases) assembled on 2006-01-24

> BS09152.5prime
GAAGTTATCAGTCGACATGGGTGAATTGCAAGCGGGAAAATCGCCCTTTA
AGACAAGAAACACCTTTGATGAAAACTTAAAGATCTGGAGTGGTGGCGAA
AAACGCAGTTTATTCTCACCAGATTTGTCCATTGGAGAAATTATCTTTCA
ACAAATGGAGCGCAATGCTATGCTCACTGCCCAGATTTCAGTTACAGAAA
ACACTGAGCTGACCTGGAAAGACATCCAGACAAACGCGATGAAGGTGGCA
AGTTATATGCGTAAACTGGGTCTGGAGCAAGGTGACTTTGTGGGAGTCAT
TGGCAGGTTGACCACTCACTTGACTGCTCTGGCCTATGCCTGTTTCTTTA
ATGGAACTCCTTATCATGCCCTACACACCGAATACGAACAATCTGCCATC
GAGAGACTGTTCGGAATAACCAAGCCACGCTTAATCTTCTGTGATGGAGA
TGAGTTTGAGAAAGTTCAAGCAGCCACCAAAGGCCTTCAGGTACAAATAG
TAACCATGCGTAATCACCCGGCAGGAATATTGAGAATTCAGGATATTTTA
ACCACTCCCGTGGAGATGAACTTTCGACCAGTGCGACTGAAAGACGGTAC
TGATCAACTACTGGCCATTCTTAGCTCTTCGGGAACATCCGGCCTTCCAA
AGGCAGTCACCATTAGCAATAGTCACCAGATTATTGGGAGTTTTCTACCC
GTGGATAGCTCGATTATTCAGTATAACCCAAACACTTTGGATTGGGCATC
AGGCATCACGATGACCATCAATGCAGCCGTGTTTAGCTTGACTAGTATAA
TTGAAGATTGTGACTTTGATCCTGCCAATTTGTGTGGCCTAATTGAGAAG
TATCGAATATCGATGGTGTTCGTAAGTTCCTCGC

BS09152.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:21:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5568-PA 1638 CG5568-RA 1..868 17..884 4340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5568-RA 1911 CG5568-RA 98..965 17..884 4340 100 Plus
CG18586-RB 1817 CG18586-RB 152..771 67..686 505 72.9 Plus
CG18586-RC 2020 CG18586-RC 524..965 245..686 485 74.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:19:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5871820..5872333 183..696 2570 100 Plus
3L 28110227 3L 5872385..5872572 697..884 940 100 Plus
3L 28110227 3L 5871598..5871765 17..184 840 100 Plus
3L 28110227 3L 5873918..5874359 245..686 470 73.8 Plus
Blast to na_te.dros performed on 2015-02-10 23:19:50 has no hits.

BS09152.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:00:53 Download gff for BS09152.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5568-PA 1..868 17..884 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:07:52 Download gff for BS09152.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5568-PA 1..868 17..884 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:31:11 Download gff for BS09152.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5568-RA 98..965 17..884 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:35:42 Download gff for BS09152.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5568-RA 98..965 17..884 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:35:42 Download gff for BS09152.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5871598..5871765 17..184 100 -> Plus
3L 5871822..5872333 185..696 100 -> Plus
3L 5872385..5872572 697..884 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:31:11 Download gff for BS09152.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5864698..5864865 17..184 100 -> Plus
arm_3L 5864922..5865433 185..696 100 -> Plus
arm_3L 5865485..5865672 697..884 100   Plus

BS09152.complete Sequence

1670 bp (1670 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636361

> BS09152.complete
GAAGTTATCAGTCGACATGGGTGAATTGCAAGCGGGAAAATCGCCCTTTA
AGACAAGAAACACCTTTGATGAAAACTTAAAGATCTGGAGTGGTGGCGAA
AAACGCAGTTTATTCTCACCAGATTTGTCCATTGGAGAAATTATCTTTCA
ACAAATGGAGCGCAATGCTATGCTCACTGCCCAGATTTCAGTTACAGAAA
ACACTGAGCTGACCTGGAAAGACATCCAGACAAACGCGATGAAGGTGGCA
AGTTATATGCGTAAACTGGGTCTGGAGCAAGGTGACTTTGTGGGAGTCAT
TGGCAGGTTGACCACTCACTTGACTGCTCTGGCCTATGCCTGTTTCTTTA
ATGGAACTCCTTATCATGCCCTACACACCGAATACGAACAATCTGCCATC
GAGAGACTGTTCGGAATAACCAAGCCACGCTTAATCTTCTGTGATGGAGA
TGAGTTTGAGAAAGTTCAAGCAGCCACCAAAGGCCTTCAGGTACAAATAG
TAACCATGCGTAATCACCCGGCAGGAATATTGAGAATTCAGGATATTTTA
ACCACTCCCGTGGAGATGAACTTTCGACCAGTGCGACTGAAAGACGGTAC
TGATCAACTACTGGCCATTCTTAGCTCTTCGGGAACATCCGGCCTTCCAA
AGGCAGTCACCATTAGCAATAGTCACCAGATTATTGGGAGTTTTCTACCC
GTGGATAGCTCGATTATTCAGTATAACCCAAACACTTTGGATTGGGCATC
AGGCATCACGATGACCATCAATGCAGCCGTGTTTAGCTTGACTAGTATAA
TTGAAGATTGTGACTTTGATCCTGCCAATTTGTGTGGCCTAATTGAGAAG
TATCGAATATCGATGGTGTTCGTAAGTTCCTCGCAATTGGCGATGCTGTC
CAATTGCCCGGAATTCTATGCGGCGGACCTATCATCCGTGAAGTATTTCT
TTTACGGCGGATCAAACTGCTCACTGGAAGTCCAGAACAAAATTCGCAGC
CGTCTAAGCAACGAATGTGTAAATTTCAGTTATACACTAACCGAGTTGAA
CAGCCCCGGATGCCTAAACTTCAACTTCGATGAGAAACCCAATTCAGTGG
GTCGTCCGGTTAGAGGCATTCAAATCAAAATAGTCAACGAGCTGGGTGAA
GCACAAGGACCCAATGTCGTGGGCGAGATATGCTTCAATAATGGTCAGAA
ATGGCCTGGTTACTACAAGAATCCGGAAGAAACGAAGAAGATGCAGGACT
CGGAGAACTGGTTTCACACCGGGGACCTGGGCTACATGGACGAGGATGGA
TATTTGTTCATTATCGATCGCTTGAAGGATATGCTCAAGTATCAGACCAT
CATGTATTACCCCAGCGAGATTGAAAGTGTCATCGCTGAAATGCCAAATG
TTGTGGAAGCTTGTGTCTTTGGCATTTGGGATCCCGTTTATGGAGATAAG
GCAGCCGCTTCAGTGGTCAAGAAACAAGGAACCCAACTAGAGGCCCAGGA
TGTTGTGGAGTATGTGAGGAAACGTATACCTGCCAAATTTAAGCAGTTGA
ATGGAGGAGCTTTGATTGTGGATCACATTATTCAGAGTGGCAATAGAAAA
GCAAACAGAGCGGCCACAAAAGCTGAGTTTTTACGAATTATGGAGAAGAA
TTAGAAGCTTTCTAGACCAT

BS09152.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:48:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5568-RA 1638 CG5568-PA 1..1638 17..1654 8190 100 Plus
CG18586-RB 1638 CG18586-PB 51..1598 67..1614 1725 74.1 Plus
CG18586-RC 1611 CG18586-PC 202..1571 245..1614 1705 75 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5568-RA 1911 CG5568-RA 98..1735 17..1654 8190 100 Plus
CG18586-RB 1817 CG18586-RB 152..1699 67..1614 1725 74.1 Plus
CG18586-RC 2020 CG18586-RC 524..1893 245..1614 1705 75 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5872385..5873342 697..1654 4790 100 Plus
3L 28110227 3L 5871820..5872333 183..696 2570 100 Plus
3L 28110227 3L 5874516..5875339 791..1614 1375 77.8 Plus
3L 28110227 3L 5871598..5871765 17..184 840 100 Plus
3L 28110227 3L 5873918..5874359 245..686 470 73.8 Plus
3R 32079331 3R 19771523..19771837 1573..1259 300 73 Minus
3R 32079331 3R 19775581..19775895 1573..1259 300 73 Minus
3R 32079331 3R 19782634..19782794 1256..1416 235 76.4 Plus
Blast to na_te.dros performed on 2014-11-27 23:48:09 has no hits.

BS09152.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:04 Download gff for BS09152.complete
Subject Subject Range Query Range Percent Splice Strand
CG5568-RA 1..1638 17..1654 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:43 Download gff for BS09152.complete
Subject Subject Range Query Range Percent Splice Strand
CG5568-RA 97..1737 17..1661 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:21 Download gff for BS09152.complete
Subject Subject Range Query Range Percent Splice Strand
CG5568-RA 98..1735 17..1654 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:04 Download gff for BS09152.complete
Subject Subject Range Query Range Percent Splice Strand
CG5568-RA 97..1737 17..1661 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:34 Download gff for BS09152.complete
Subject Subject Range Query Range Percent Splice Strand
CG5568-RA 98..1735 17..1654 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:34 Download gff for BS09152.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5872385..5873342 697..1654 100   Plus
3L 5871598..5871765 17..184 100 -> Plus
3L 5871822..5872333 185..696 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:21 Download gff for BS09152.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5864698..5864865 17..184 100 -> Plus
arm_3L 5864922..5865433 185..696 100 -> Plus
arm_3L 5865485..5866442 697..1654 100   Plus

BS09152.pep Sequence

Translation from 16 to 1653

> BS09152.pep
MGELQAGKSPFKTRNTFDENLKIWSGGEKRSLFSPDLSIGEIIFQQMERN
AMLTAQISVTENTELTWKDIQTNAMKVASYMRKLGLEQGDFVGVIGRLTT
HLTALAYACFFNGTPYHALHTEYEQSAIERLFGITKPRLIFCDGDEFEKV
QAATKGLQVQIVTMRNHPAGILRIQDILTTPVEMNFRPVRLKDGTDQLLA
ILSSSGTSGLPKAVTISNSHQIIGSFLPVDSSIIQYNPNTLDWASGITMT
INAAVFSLTSIIEDCDFDPANLCGLIEKYRISMVFVSSSQLAMLSNCPEF
YAADLSSVKYFFYGGSNCSLEVQNKIRSRLSNECVNFSYTLTELNSPGCL
NFNFDEKPNSVGRPVRGIQIKIVNELGEAQGPNVVGEICFNNGQKWPGYY
KNPEETKKMQDSENWFHTGDLGYMDEDGYLFIIDRLKDMLKYQTIMYYPS
EIESVIAEMPNVVEACVFGIWDPVYGDKAAASVVKKQGTQLEAQDVVEYV
RKRIPAKFKQLNGGALIVDHIIQSGNRKANRAATKAEFLRIMEKN*

BS09152.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG5568-PA 545 CG5568-PA 1..545 1..545 2836 100 Plus
CG18586-PB 545 CG18586-PB 1..545 1..545 2016 69.7 Plus
CG18586-PC 536 CG18586-PC 1..536 1..545 1982 69 Plus
CG11407-PA 538 CG11407-PA 2..531 10..539 1636 56.4 Plus
CG6300-PA 537 CG6300-PA 2..537 10..545 1575 53.9 Plus