Clone Sequence Records
BS09152.3prime Sequence
938 bp (913 high quality bases) assembled on 2006-01-24
> BS09152.3prime
ATGGTCTAGAAAGCTTCTAATTCTTCTCCATAATTCGTAAAAACTCAGCT
TTTGTGGCCGCTCTGTTTGCTTTTCTATTGCCACTCTGAATAATGTGATC
CACAATCAAAGCTCCTCCATTCAACTGCTTAAATTTGGCAGGTATACGTT
TCCTCACATACTCCACAACATCCTGGGCCTCTAGTTGGGTTCCTTGTTTC
TTGACCACTGAAGCGGCTGCCTTATCTCCATAAACGGGATCCCAAATGCC
AAAGACACAAGCTTCCACAACATTTGGCATTTCAGCGATGACACTTTCAA
TCTCGCTGGGGTAATACATGATGGTCTGATACTTGAGCATATCCTTCAAG
CGATCGATAATGAACAAATATCCATCCTCGTCCATGTAGCCCAGGTCCCC
GGTGTGAAACCAGTTCTCCGAGTCCTGCATCTTCTTCGTTTCTTCCGGAT
TCTTGTAGTAACCAGGCCATTTCTGACCATTATTGAAGCATATCTCGCCC
ACGACATTGGGTCCTTGTGCTTCACCCAGCTCGTTGACTATTTTGATTTG
AATGCCTCTAACCGGACGACCCACTGAATTGGGTTTCTCATCGAAGTTGA
AGTTTAGGCATCCGGGGCTGTTCAACTCGGTTAGTGTATAACTGAAATTT
ACACATTCGTTGCTTAGACGGCTGCGAATTTTGTTCTGGACTTCCAGTGA
GCAGTTTGATCCGCCGTAAAAGAAATACTTCACGGATGATAGGTCCGCCG
CATAGAATTCCGGGCAATTGGACAGCATCGCCAATTGCGAGGAACTTACG
AACACCATCGATATTCGATACTTCTCAATTAGGCCACACAAATTGGCAGG
ATCAAAGTCACAATCTTCAATTATACTAGTCAAGCTAAACACGGCTGCAT
TGATGGTCATCGTGATGCCTGATGCCCAATCCAAAGTG
BS09152.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:21:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5568-PA | 1638 | CG5568-RA | 717..1638 | 938..17 | 4610 | 100 | Minus |
CG18586-PA | 1695 | CG18586-RA | 1352..1442 | 360..270 | 205 | 89 | Minus |
CG18586-PA | 1695 | CG18586-RA | 1117..1146 | 595..566 | 150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:01:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5568-RA | 1911 | CG5568-RA | 814..1735 | 938..17 | 4610 | 100 | Minus |
CG18586-RC | 2020 | CG18586-RC | 1070..1893 | 880..57 | 1390 | 78.2 | Minus |
CG18586-RB | 1817 | CG18586-RB | 876..1699 | 880..57 | 1390 | 78.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:01:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5872421..5873342 | 938..17 | 4610 | 100 | Minus |
3L | 28110227 | 3L | 5874516..5875339 | 880..57 | 1375 | 77.8 | Minus |
3R | 32079331 | 3R | 19771523..19771837 | 98..412 | 300 | 73 | Plus |
3R | 32079331 | 3R | 19775581..19775895 | 98..412 | 300 | 73 | Plus |
3R | 32079331 | 3R | 19782634..19782794 | 415..255 | 235 | 76.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:01:53 has no hits.
BS09152.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:00:52 Download gff for
BS09152.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5568-PA | 717..1638 | 17..938 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:07:51 Download gff for
BS09152.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5568-PA | 717..1638 | 17..938 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:23:22 Download gff for
BS09152.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5568-RA | 814..1738 | 10..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:13 Download gff for
BS09152.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5568-RA | 814..1738 | 10..938 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:13 Download gff for
BS09152.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5872421..5873345 | 10..938 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:23:22 Download gff for
BS09152.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5865521..5866445 | 10..938 | 99 | | Minus |
BS09152.5prime Sequence
884 bp (839 high quality bases) assembled on 2006-01-24
> BS09152.5prime
GAAGTTATCAGTCGACATGGGTGAATTGCAAGCGGGAAAATCGCCCTTTA
AGACAAGAAACACCTTTGATGAAAACTTAAAGATCTGGAGTGGTGGCGAA
AAACGCAGTTTATTCTCACCAGATTTGTCCATTGGAGAAATTATCTTTCA
ACAAATGGAGCGCAATGCTATGCTCACTGCCCAGATTTCAGTTACAGAAA
ACACTGAGCTGACCTGGAAAGACATCCAGACAAACGCGATGAAGGTGGCA
AGTTATATGCGTAAACTGGGTCTGGAGCAAGGTGACTTTGTGGGAGTCAT
TGGCAGGTTGACCACTCACTTGACTGCTCTGGCCTATGCCTGTTTCTTTA
ATGGAACTCCTTATCATGCCCTACACACCGAATACGAACAATCTGCCATC
GAGAGACTGTTCGGAATAACCAAGCCACGCTTAATCTTCTGTGATGGAGA
TGAGTTTGAGAAAGTTCAAGCAGCCACCAAAGGCCTTCAGGTACAAATAG
TAACCATGCGTAATCACCCGGCAGGAATATTGAGAATTCAGGATATTTTA
ACCACTCCCGTGGAGATGAACTTTCGACCAGTGCGACTGAAAGACGGTAC
TGATCAACTACTGGCCATTCTTAGCTCTTCGGGAACATCCGGCCTTCCAA
AGGCAGTCACCATTAGCAATAGTCACCAGATTATTGGGAGTTTTCTACCC
GTGGATAGCTCGATTATTCAGTATAACCCAAACACTTTGGATTGGGCATC
AGGCATCACGATGACCATCAATGCAGCCGTGTTTAGCTTGACTAGTATAA
TTGAAGATTGTGACTTTGATCCTGCCAATTTGTGTGGCCTAATTGAGAAG
TATCGAATATCGATGGTGTTCGTAAGTTCCTCGC
BS09152.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:21:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5568-PA | 1638 | CG5568-RA | 1..868 | 17..884 | 4340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:19:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5568-RA | 1911 | CG5568-RA | 98..965 | 17..884 | 4340 | 100 | Plus |
CG18586-RB | 1817 | CG18586-RB | 152..771 | 67..686 | 505 | 72.9 | Plus |
CG18586-RC | 2020 | CG18586-RC | 524..965 | 245..686 | 485 | 74.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:19:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5871820..5872333 | 183..696 | 2570 | 100 | Plus |
3L | 28110227 | 3L | 5872385..5872572 | 697..884 | 940 | 100 | Plus |
3L | 28110227 | 3L | 5871598..5871765 | 17..184 | 840 | 100 | Plus |
3L | 28110227 | 3L | 5873918..5874359 | 245..686 | 470 | 73.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:19:50 has no hits.
BS09152.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:00:53 Download gff for
BS09152.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5568-PA | 1..868 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:07:52 Download gff for
BS09152.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5568-PA | 1..868 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:31:11 Download gff for
BS09152.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5568-RA | 98..965 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:35:42 Download gff for
BS09152.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5568-RA | 98..965 | 17..884 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:35:42 Download gff for
BS09152.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5871598..5871765 | 17..184 | 100 | -> | Plus |
3L | 5871822..5872333 | 185..696 | 100 | -> | Plus |
3L | 5872385..5872572 | 697..884 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:31:11 Download gff for
BS09152.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5864698..5864865 | 17..184 | 100 | -> | Plus |
arm_3L | 5864922..5865433 | 185..696 | 100 | -> | Plus |
arm_3L | 5865485..5865672 | 697..884 | 100 | | Plus |
BS09152.complete Sequence
1670 bp (1670 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636361
> BS09152.complete
GAAGTTATCAGTCGACATGGGTGAATTGCAAGCGGGAAAATCGCCCTTTA
AGACAAGAAACACCTTTGATGAAAACTTAAAGATCTGGAGTGGTGGCGAA
AAACGCAGTTTATTCTCACCAGATTTGTCCATTGGAGAAATTATCTTTCA
ACAAATGGAGCGCAATGCTATGCTCACTGCCCAGATTTCAGTTACAGAAA
ACACTGAGCTGACCTGGAAAGACATCCAGACAAACGCGATGAAGGTGGCA
AGTTATATGCGTAAACTGGGTCTGGAGCAAGGTGACTTTGTGGGAGTCAT
TGGCAGGTTGACCACTCACTTGACTGCTCTGGCCTATGCCTGTTTCTTTA
ATGGAACTCCTTATCATGCCCTACACACCGAATACGAACAATCTGCCATC
GAGAGACTGTTCGGAATAACCAAGCCACGCTTAATCTTCTGTGATGGAGA
TGAGTTTGAGAAAGTTCAAGCAGCCACCAAAGGCCTTCAGGTACAAATAG
TAACCATGCGTAATCACCCGGCAGGAATATTGAGAATTCAGGATATTTTA
ACCACTCCCGTGGAGATGAACTTTCGACCAGTGCGACTGAAAGACGGTAC
TGATCAACTACTGGCCATTCTTAGCTCTTCGGGAACATCCGGCCTTCCAA
AGGCAGTCACCATTAGCAATAGTCACCAGATTATTGGGAGTTTTCTACCC
GTGGATAGCTCGATTATTCAGTATAACCCAAACACTTTGGATTGGGCATC
AGGCATCACGATGACCATCAATGCAGCCGTGTTTAGCTTGACTAGTATAA
TTGAAGATTGTGACTTTGATCCTGCCAATTTGTGTGGCCTAATTGAGAAG
TATCGAATATCGATGGTGTTCGTAAGTTCCTCGCAATTGGCGATGCTGTC
CAATTGCCCGGAATTCTATGCGGCGGACCTATCATCCGTGAAGTATTTCT
TTTACGGCGGATCAAACTGCTCACTGGAAGTCCAGAACAAAATTCGCAGC
CGTCTAAGCAACGAATGTGTAAATTTCAGTTATACACTAACCGAGTTGAA
CAGCCCCGGATGCCTAAACTTCAACTTCGATGAGAAACCCAATTCAGTGG
GTCGTCCGGTTAGAGGCATTCAAATCAAAATAGTCAACGAGCTGGGTGAA
GCACAAGGACCCAATGTCGTGGGCGAGATATGCTTCAATAATGGTCAGAA
ATGGCCTGGTTACTACAAGAATCCGGAAGAAACGAAGAAGATGCAGGACT
CGGAGAACTGGTTTCACACCGGGGACCTGGGCTACATGGACGAGGATGGA
TATTTGTTCATTATCGATCGCTTGAAGGATATGCTCAAGTATCAGACCAT
CATGTATTACCCCAGCGAGATTGAAAGTGTCATCGCTGAAATGCCAAATG
TTGTGGAAGCTTGTGTCTTTGGCATTTGGGATCCCGTTTATGGAGATAAG
GCAGCCGCTTCAGTGGTCAAGAAACAAGGAACCCAACTAGAGGCCCAGGA
TGTTGTGGAGTATGTGAGGAAACGTATACCTGCCAAATTTAAGCAGTTGA
ATGGAGGAGCTTTGATTGTGGATCACATTATTCAGAGTGGCAATAGAAAA
GCAAACAGAGCGGCCACAAAAGCTGAGTTTTTACGAATTATGGAGAAGAA
TTAGAAGCTTTCTAGACCAT
BS09152.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:48:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5568-RA | 1638 | CG5568-PA | 1..1638 | 17..1654 | 8190 | 100 | Plus |
CG18586-RB | 1638 | CG18586-PB | 51..1598 | 67..1614 | 1725 | 74.1 | Plus |
CG18586-RC | 1611 | CG18586-PC | 202..1571 | 245..1614 | 1705 | 75 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:48:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5568-RA | 1911 | CG5568-RA | 98..1735 | 17..1654 | 8190 | 100 | Plus |
CG18586-RB | 1817 | CG18586-RB | 152..1699 | 67..1614 | 1725 | 74.1 | Plus |
CG18586-RC | 2020 | CG18586-RC | 524..1893 | 245..1614 | 1705 | 75 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:48:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5872385..5873342 | 697..1654 | 4790 | 100 | Plus |
3L | 28110227 | 3L | 5871820..5872333 | 183..696 | 2570 | 100 | Plus |
3L | 28110227 | 3L | 5874516..5875339 | 791..1614 | 1375 | 77.8 | Plus |
3L | 28110227 | 3L | 5871598..5871765 | 17..184 | 840 | 100 | Plus |
3L | 28110227 | 3L | 5873918..5874359 | 245..686 | 470 | 73.8 | Plus |
3R | 32079331 | 3R | 19771523..19771837 | 1573..1259 | 300 | 73 | Minus |
3R | 32079331 | 3R | 19775581..19775895 | 1573..1259 | 300 | 73 | Minus |
3R | 32079331 | 3R | 19782634..19782794 | 1256..1416 | 235 | 76.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:48:09 has no hits.
BS09152.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:04 Download gff for
BS09152.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5568-RA | 1..1638 | 17..1654 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:43 Download gff for
BS09152.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5568-RA | 97..1737 | 17..1661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:21 Download gff for
BS09152.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5568-RA | 98..1735 | 17..1654 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:04 Download gff for
BS09152.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5568-RA | 97..1737 | 17..1661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:34 Download gff for
BS09152.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5568-RA | 98..1735 | 17..1654 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:34 Download gff for
BS09152.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5872385..5873342 | 697..1654 | 100 | | Plus |
3L | 5871598..5871765 | 17..184 | 100 | -> | Plus |
3L | 5871822..5872333 | 185..696 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:21 Download gff for
BS09152.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5864698..5864865 | 17..184 | 100 | -> | Plus |
arm_3L | 5864922..5865433 | 185..696 | 100 | -> | Plus |
arm_3L | 5865485..5866442 | 697..1654 | 100 | | Plus |
BS09152.pep Sequence
Translation from 16 to 1653
> BS09152.pep
MGELQAGKSPFKTRNTFDENLKIWSGGEKRSLFSPDLSIGEIIFQQMERN
AMLTAQISVTENTELTWKDIQTNAMKVASYMRKLGLEQGDFVGVIGRLTT
HLTALAYACFFNGTPYHALHTEYEQSAIERLFGITKPRLIFCDGDEFEKV
QAATKGLQVQIVTMRNHPAGILRIQDILTTPVEMNFRPVRLKDGTDQLLA
ILSSSGTSGLPKAVTISNSHQIIGSFLPVDSSIIQYNPNTLDWASGITMT
INAAVFSLTSIIEDCDFDPANLCGLIEKYRISMVFVSSSQLAMLSNCPEF
YAADLSSVKYFFYGGSNCSLEVQNKIRSRLSNECVNFSYTLTELNSPGCL
NFNFDEKPNSVGRPVRGIQIKIVNELGEAQGPNVVGEICFNNGQKWPGYY
KNPEETKKMQDSENWFHTGDLGYMDEDGYLFIIDRLKDMLKYQTIMYYPS
EIESVIAEMPNVVEACVFGIWDPVYGDKAAASVVKKQGTQLEAQDVVEYV
RKRIPAKFKQLNGGALIVDHIIQSGNRKANRAATKAEFLRIMEKN*
BS09152.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:40:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5568-PA | 545 | CG5568-PA | 1..545 | 1..545 | 2836 | 100 | Plus |
CG18586-PB | 545 | CG18586-PB | 1..545 | 1..545 | 2016 | 69.7 | Plus |
CG18586-PC | 536 | CG18586-PC | 1..536 | 1..545 | 1982 | 69 | Plus |
CG11407-PA | 538 | CG11407-PA | 2..531 | 10..539 | 1636 | 56.4 | Plus |
CG6300-PA | 537 | CG6300-PA | 2..537 | 10..545 | 1575 | 53.9 | Plus |