Clone BS09157 Report

Search the DGRC for BS09157

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:91
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptTpc1-RA
Protein status:BS09157.pep: full length peptide match
Sequenced Size:1031

Clone Sequence Records

BS09157.3prime Sequence

905 bp (851 high quality bases) assembled on 2006-01-24

> BS09157.3prime
ATGGTCTAGAAAGCTTCTAGAAGCGCACCTGCTTGAGCTTATCGTAAATG
CTGAAGTACAGGGCCGTCGTCATGCTTGACTTAAGGAGTGTGGGGGCCAC
GCCCTTGTACAAGCCCCTAACGCCCTCTTGGCGCACGGTCAGCCGCAAAC
AGTCCCAGACTCCGTGGCACTGCAGTGTCTGTCCGAAGGTCTGGCGATTC
GACTCGAAGCCCTGGATTTGCAGTCGCTTTTTGATCAAATCGAAGGGATA
CACGATCGTCTTGGATAGCATGCCCGAGGAGGCGCCCAATCCCAGCAGCG
TCCACGTGGGCAATTGGCTGCGATCGCTCACCTCCAAGAAGGCACACGCC
CAGTCGCTGAACAGGCGGTAAGCCATAAAGTTGGTGCCCATCAGCGGCGT
TATTTGCAGCAGGGCGGAGGACAGACCGCGGTACATGCCGCGAGGTCCCT
CCTGGCGGACAATCGCCGACACAGCCCTTGTTGCATTCCTGTATCCCTTG
CTGGTGTCCTGGGCAATCAGACGAGTGCGGATGACGTCCAGCGGCGTGGA
TATGATCACTGCTGCTCCTCCGGCCGCAGCGCCGCACAGGAAGTTCGATA
GATGCTGATGATCCGCCAGATAGCTGGTCTGTTTGGCCATCAGGCTGAGC
TGCTCGTACGTCCAGAACTGACAAATGCCGTACATTATGCTCAGCACTTG
GGCAGGATTGTGTCCCTTCCAGAAGGCCAACATTCCCTCCTCGCGGTATA
TGGTTTTCACCGCCTGTCCGATGGATGTGTATTTGGAGGTAAGGGCTCCT
GGTCCCTCCTTGGCGGCGTTCTTGCCCAGCGGCTCCACCTGCAGCTGGAA
GCGGATCTTTAGCACGTCCAGCGGCTGGCAGGTGGAGCGCGTAATGGCCG
CCCAA

BS09157.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG6608-PB 999 CG6608-RB 114..999 902..17 4430 100 Minus
CG6608-PA 999 CG6608-RA 114..999 902..17 4430 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
Tpc1-RA 2062 CG6608-RA 743..1628 902..17 4430 100 Minus
Tpc1-RB 2161 CG6608-RB 842..1727 902..17 4430 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10880006..10880891 17..902 4430 100 Plus
Blast to na_te.dros performed on 2015-01-31 14:32:01 has no hits.

BS09157.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:01:01 Download gff for BS09157.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6608-PA 113..999 17..903 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:08:02 Download gff for BS09157.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6608-PA 113..999 17..903 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:07:12 Download gff for BS09157.3prime
Subject Subject Range Query Range Percent Splice Strand
Tpc1-RB 841..1727 17..903 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:30:01 Download gff for BS09157.3prime
Subject Subject Range Query Range Percent Splice Strand
Tpc1-RB 841..1727 17..903 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:30:01 Download gff for BS09157.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10880006..10880891 17..903 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:07:12 Download gff for BS09157.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6705728..6706613 17..903 99   Plus

BS09157.5prime Sequence

962 bp (844 high quality bases) assembled on 2006-01-24

> BS09157.5prime
GAAGTTATCAGTCGACATGGCGGTTACCACAGGCTCCACCAGTGAGGCGA
CCACAACCACAACTCCCGTTCCGCGACGCAAGCACAGTACGCGGGAGCAG
CTGCATCAAATGCTGGCCGGTGGACTTTCGGCGGCCATTACGCGCTCCAC
CTGCCAGCCGCTGGACGTGCTAAAGATCCGCTTCCAGCTGCAGGTGGAGC
CGCTGGGCAAGAACGCCGCCAAGGAGGGACCAGGAGCCCTTACCTCCAAA
TACACATCCATCGGACAGGCGGTGAAAACCATATACCGCGAGGAGGGAAT
GTTGGCCTTCTGGAAGGGACACAATCCTGCCCAAGTGCTGAGCATAATGT
ACGGCATTTGTCAGTTCTGGACGTACGAGCAGCTCAGCCTGATGGCCAAA
CAGACCAGCTATCTGGCGGATCATCAGCATCTATCGAACTTCCTGTGCGG
CGCTGCGGCCGGAGGAGCAGCAGTGATCATATCCACGCCGCTGGACGTCA
TCCGCACTCGTCTGATTGCCCAGGACACCAGCAAGGGATACAGGAATGCA
ACAAGGGCTGTGTCGGCGATTGTCCGCCAGGAGGGACCTCGCGGCATGTA
CCGCGGTCTGTCCTCCGCCCTGCTGCAAATAACGCCGCTGATGGGCACCA
ACTTTATGGCTTACCGCCTGTTCAGCGACTGGGCGTGTGCCTTCTTGGAG
GTGAGCGATCGCAGCCAATTGCCCACGTGGACGCTGCTGGGATTGGGCGC
CTCCTCGGGCATGCTATCCAAGACGATCGTGTATCCCTTCGATTTGATCA
AAAAGCGACTGCAAATCCAGGGCTTCGAGTCGAATCGCCAGACCTTCGGA
CAGACACTGCAGTGCCACGGAGTCTGGGACTGTTTGCGGCTGACCGTGCG
CAAAGAAGGCGTTAGGGGCTTGTACAAGGGCGTGGCCCCACACTCCCTAA
GTCAAGCATGAC

BS09157.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:21:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG6608-PB 999 CG6608-RB 1..923 17..939 4540 99.6 Plus
CG6608-PA 999 CG6608-RA 1..923 17..939 4540 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:10:37
Subject Length Description Subject Range Query Range Score Percent Strand
Tpc1-RA 2062 CG6608-RA 627..1576 14..962 4665 99.5 Plus
Tpc1-RB 2161 CG6608-RB 726..1675 14..962 4665 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:10:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10880058..10881007 962..14 4640 99.5 Minus
Blast to na_te.dros performed on 2015-02-13 09:10:36 has no hits.

BS09157.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:01:02 Download gff for BS09157.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6608-PA 1..947 17..962 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:08:04 Download gff for BS09157.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6608-PA 1..947 17..962 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:46:03 Download gff for BS09157.5prime
Subject Subject Range Query Range Percent Splice Strand
Tpc1-RB 726..1675 14..962 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:03:46 Download gff for BS09157.5prime
Subject Subject Range Query Range Percent Splice Strand
Tpc1-RB 726..1675 14..962 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:03:46 Download gff for BS09157.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10880058..10881007 14..962 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:46:03 Download gff for BS09157.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6705780..6706729 14..962 99   Minus

BS09157.complete Sequence

1031 bp assembled on 2008-08-15

GenBank Submission: FJ636362

> BS09157.complete
GAAGTTATCAGTCGACATGGCGGTTACCACAGGCTCCACCAGTGAGGCGA
CCACAACCACAACTCCCGTTCCGCGACGCAAGCACAGTACGCGGGAGCAG
CTGCATCAAATGCTGGCCGGTGGACTTTCGGCGGCCATTACGCGCTCCAC
CTGCCAGCCGCTGGACGTGCTAAAGATCCGCTTCCAGCTGCAGGTGGAGC
CGCTGGGCAAGAACGCCGCCAAGGAGGGACCAGGAGCCCTTACCTCCAAA
TACACATCCATCGGACAGGCGGTGAAAACCATATACCGCGAGGAGGGAAT
GTTGGCCTTCTGGAAGGGACACAATCCTGCCCAAGTGCTGAGCATAATGT
ACGGCATTTGTCAGTTCTGGACGTACGAGCAGCTCAGCCTGATGGCCAAA
CAGACCAGCTATCTGGCGGATCATCAGCATCTATCGAACTTCCTGTGCGG
CGCTGCGGCCGGAGGAGCAGCAGTGATCATATCCACGCCGCTGGACGTCA
TCCGCACTCGTCTGATTGCCCAGGACACCAGCAAGGGATACAGGAATGCA
ACAAGGGCTGTGTCGGCGATTGTCCGCCAGGAGGGACCTCGCGGCATGTA
CCGCGGTCTGTCCTCCGCCCTGCTGCAAATAACGCCGCTGATGGGCACCA
ACTTTATGGCTTACCGCCTGTTCAGCGACTGGGCGTGTGCCTTCTTGGAG
GTGAGCGATCGCAGCCAATTGCCCACGTGGACGCTGCTGGGATTGGGCGC
CTCCTCGGGCATGCTATCCAAGACGATCGTGTATCCCTTCGATTTGATCA
AAAAGCGACTGCAAATCCAGGGCTTCGAGTCGAATCGCCAGACCTTCGGA
CAGACACTGCAGTGCCACGGAGTCTGGGACTGTTTGCGGCTGACCGTGCG
CCAAGAGGGCGTTAGGGGCTTGTACAAGGGCGTGGCCCCCACACTCCTTA
AGTCAAGCATGACGACGGCCCTGTACTTCAGCATTTACGATAAGCTCAAG
CAGGTGCGCTTCTAGAAGCTTTCTAGACCAT

BS09157.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
Tpc1-RA 999 CG6608-PA 1..999 17..1015 4980 99.9 Plus
Tpc1-RB 999 CG6608-PB 1..999 17..1015 4980 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
Tpc1-RA 2062 CG6608-RA 627..1628 14..1015 4995 99.9 Plus
Tpc1-RB 2161 CG6608-RB 726..1727 14..1015 4995 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10880006..10881007 1015..14 4995 99.9 Minus
Blast to na_te.dros performed on 2014-11-27 14:39:19 has no hits.

BS09157.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:54:13 Download gff for BS09157.complete
Subject Subject Range Query Range Percent Splice Strand
CG6608-RA 605..1606 14..1015 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:42 Download gff for BS09157.complete
Subject Subject Range Query Range Percent Splice Strand
Tpc1-RB 729..1727 17..1015 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:50 Download gff for BS09157.complete
Subject Subject Range Query Range Percent Splice Strand
CG6608-RA 608..1606 17..1015 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:59 Download gff for BS09157.complete
Subject Subject Range Query Range Percent Splice Strand
Tpc1-RB 729..1727 17..1015 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:59 Download gff for BS09157.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10880006..10881004 17..1015 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:42 Download gff for BS09157.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6705728..6706726 17..1015 99   Minus

BS09157.pep Sequence

Translation from 16 to 1014

> BS09157.pep
MAVTTGSTSEATTTTTPVPRRKHSTREQLHQMLAGGLSAAITRSTCQPLD
VLKIRFQLQVEPLGKNAAKEGPGALTSKYTSIGQAVKTIYREEGMLAFWK
GHNPAQVLSIMYGICQFWTYEQLSLMAKQTSYLADHQHLSNFLCGAAAGG
AAVIISTPLDVIRTRLIAQDTSKGYRNATRAVSAIVRQEGPRGMYRGLSS
ALLQITPLMGTNFMAYRLFSDWACAFLEVSDRSQLPTWTLLGLGASSGML
SKTIVYPFDLIKKRLQIQGFESNRQTFGQTLQCHGVWDCLRLTVRQEGVR
GLYKGVAPTLLKSSMTTALYFSIYDKLKQVRF*

BS09157.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
Tpc1-PA 332 CG6608-PA 1..332 1..332 1708 100 Plus
Tpc1-PB 332 CG6608-PB 1..332 1..332 1708 100 Plus
Tpc2-PB 323 CG2857-PB 3..304 22..329 630 41.6 Plus
att-ORFA-PF 365 CG4241-PF 51..351 4..328 299 25.5 Plus
att-ORFA-PC 365 CG4241-PC 51..351 4..328 299 25.5 Plus
att-ORFA-PF 365 CG4241-PF 162..353 22..222 160 28.2 Plus