Clone Sequence Records
BS09157.3prime Sequence
905 bp (851 high quality bases) assembled on 2006-01-24
> BS09157.3prime
ATGGTCTAGAAAGCTTCTAGAAGCGCACCTGCTTGAGCTTATCGTAAATG
CTGAAGTACAGGGCCGTCGTCATGCTTGACTTAAGGAGTGTGGGGGCCAC
GCCCTTGTACAAGCCCCTAACGCCCTCTTGGCGCACGGTCAGCCGCAAAC
AGTCCCAGACTCCGTGGCACTGCAGTGTCTGTCCGAAGGTCTGGCGATTC
GACTCGAAGCCCTGGATTTGCAGTCGCTTTTTGATCAAATCGAAGGGATA
CACGATCGTCTTGGATAGCATGCCCGAGGAGGCGCCCAATCCCAGCAGCG
TCCACGTGGGCAATTGGCTGCGATCGCTCACCTCCAAGAAGGCACACGCC
CAGTCGCTGAACAGGCGGTAAGCCATAAAGTTGGTGCCCATCAGCGGCGT
TATTTGCAGCAGGGCGGAGGACAGACCGCGGTACATGCCGCGAGGTCCCT
CCTGGCGGACAATCGCCGACACAGCCCTTGTTGCATTCCTGTATCCCTTG
CTGGTGTCCTGGGCAATCAGACGAGTGCGGATGACGTCCAGCGGCGTGGA
TATGATCACTGCTGCTCCTCCGGCCGCAGCGCCGCACAGGAAGTTCGATA
GATGCTGATGATCCGCCAGATAGCTGGTCTGTTTGGCCATCAGGCTGAGC
TGCTCGTACGTCCAGAACTGACAAATGCCGTACATTATGCTCAGCACTTG
GGCAGGATTGTGTCCCTTCCAGAAGGCCAACATTCCCTCCTCGCGGTATA
TGGTTTTCACCGCCTGTCCGATGGATGTGTATTTGGAGGTAAGGGCTCCT
GGTCCCTCCTTGGCGGCGTTCTTGCCCAGCGGCTCCACCTGCAGCTGGAA
GCGGATCTTTAGCACGTCCAGCGGCTGGCAGGTGGAGCGCGTAATGGCCG
CCCAA
BS09157.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:21:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6608-PB | 999 | CG6608-RB | 114..999 | 902..17 | 4430 | 100 | Minus |
CG6608-PA | 999 | CG6608-RA | 114..999 | 902..17 | 4430 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:32:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tpc1-RA | 2062 | CG6608-RA | 743..1628 | 902..17 | 4430 | 100 | Minus |
Tpc1-RB | 2161 | CG6608-RB | 842..1727 | 902..17 | 4430 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:31:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10880006..10880891 | 17..902 | 4430 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 14:32:01 has no hits.
BS09157.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:01:01 Download gff for
BS09157.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6608-PA | 113..999 | 17..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:08:02 Download gff for
BS09157.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6608-PA | 113..999 | 17..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:07:12 Download gff for
BS09157.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tpc1-RB | 841..1727 | 17..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:30:01 Download gff for
BS09157.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tpc1-RB | 841..1727 | 17..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:30:01 Download gff for
BS09157.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10880006..10880891 | 17..903 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:07:12 Download gff for
BS09157.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6705728..6706613 | 17..903 | 99 | | Plus |
BS09157.5prime Sequence
962 bp (844 high quality bases) assembled on 2006-01-24
> BS09157.5prime
GAAGTTATCAGTCGACATGGCGGTTACCACAGGCTCCACCAGTGAGGCGA
CCACAACCACAACTCCCGTTCCGCGACGCAAGCACAGTACGCGGGAGCAG
CTGCATCAAATGCTGGCCGGTGGACTTTCGGCGGCCATTACGCGCTCCAC
CTGCCAGCCGCTGGACGTGCTAAAGATCCGCTTCCAGCTGCAGGTGGAGC
CGCTGGGCAAGAACGCCGCCAAGGAGGGACCAGGAGCCCTTACCTCCAAA
TACACATCCATCGGACAGGCGGTGAAAACCATATACCGCGAGGAGGGAAT
GTTGGCCTTCTGGAAGGGACACAATCCTGCCCAAGTGCTGAGCATAATGT
ACGGCATTTGTCAGTTCTGGACGTACGAGCAGCTCAGCCTGATGGCCAAA
CAGACCAGCTATCTGGCGGATCATCAGCATCTATCGAACTTCCTGTGCGG
CGCTGCGGCCGGAGGAGCAGCAGTGATCATATCCACGCCGCTGGACGTCA
TCCGCACTCGTCTGATTGCCCAGGACACCAGCAAGGGATACAGGAATGCA
ACAAGGGCTGTGTCGGCGATTGTCCGCCAGGAGGGACCTCGCGGCATGTA
CCGCGGTCTGTCCTCCGCCCTGCTGCAAATAACGCCGCTGATGGGCACCA
ACTTTATGGCTTACCGCCTGTTCAGCGACTGGGCGTGTGCCTTCTTGGAG
GTGAGCGATCGCAGCCAATTGCCCACGTGGACGCTGCTGGGATTGGGCGC
CTCCTCGGGCATGCTATCCAAGACGATCGTGTATCCCTTCGATTTGATCA
AAAAGCGACTGCAAATCCAGGGCTTCGAGTCGAATCGCCAGACCTTCGGA
CAGACACTGCAGTGCCACGGAGTCTGGGACTGTTTGCGGCTGACCGTGCG
CAAAGAAGGCGTTAGGGGCTTGTACAAGGGCGTGGCCCCACACTCCCTAA
GTCAAGCATGAC
BS09157.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:21:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6608-PB | 999 | CG6608-RB | 1..923 | 17..939 | 4540 | 99.6 | Plus |
CG6608-PA | 999 | CG6608-RA | 1..923 | 17..939 | 4540 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:10:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tpc1-RA | 2062 | CG6608-RA | 627..1576 | 14..962 | 4665 | 99.5 | Plus |
Tpc1-RB | 2161 | CG6608-RB | 726..1675 | 14..962 | 4665 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:10:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10880058..10881007 | 962..14 | 4640 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:10:36 has no hits.
BS09157.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:01:02 Download gff for
BS09157.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6608-PA | 1..947 | 17..962 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:08:04 Download gff for
BS09157.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6608-PA | 1..947 | 17..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:46:03 Download gff for
BS09157.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tpc1-RB | 726..1675 | 14..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:03:46 Download gff for
BS09157.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tpc1-RB | 726..1675 | 14..962 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:03:46 Download gff for
BS09157.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10880058..10881007 | 14..962 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:46:03 Download gff for
BS09157.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6705780..6706729 | 14..962 | 99 | | Minus |
BS09157.complete Sequence
1031 bp assembled on 2008-08-15
GenBank Submission: FJ636362
> BS09157.complete
GAAGTTATCAGTCGACATGGCGGTTACCACAGGCTCCACCAGTGAGGCGA
CCACAACCACAACTCCCGTTCCGCGACGCAAGCACAGTACGCGGGAGCAG
CTGCATCAAATGCTGGCCGGTGGACTTTCGGCGGCCATTACGCGCTCCAC
CTGCCAGCCGCTGGACGTGCTAAAGATCCGCTTCCAGCTGCAGGTGGAGC
CGCTGGGCAAGAACGCCGCCAAGGAGGGACCAGGAGCCCTTACCTCCAAA
TACACATCCATCGGACAGGCGGTGAAAACCATATACCGCGAGGAGGGAAT
GTTGGCCTTCTGGAAGGGACACAATCCTGCCCAAGTGCTGAGCATAATGT
ACGGCATTTGTCAGTTCTGGACGTACGAGCAGCTCAGCCTGATGGCCAAA
CAGACCAGCTATCTGGCGGATCATCAGCATCTATCGAACTTCCTGTGCGG
CGCTGCGGCCGGAGGAGCAGCAGTGATCATATCCACGCCGCTGGACGTCA
TCCGCACTCGTCTGATTGCCCAGGACACCAGCAAGGGATACAGGAATGCA
ACAAGGGCTGTGTCGGCGATTGTCCGCCAGGAGGGACCTCGCGGCATGTA
CCGCGGTCTGTCCTCCGCCCTGCTGCAAATAACGCCGCTGATGGGCACCA
ACTTTATGGCTTACCGCCTGTTCAGCGACTGGGCGTGTGCCTTCTTGGAG
GTGAGCGATCGCAGCCAATTGCCCACGTGGACGCTGCTGGGATTGGGCGC
CTCCTCGGGCATGCTATCCAAGACGATCGTGTATCCCTTCGATTTGATCA
AAAAGCGACTGCAAATCCAGGGCTTCGAGTCGAATCGCCAGACCTTCGGA
CAGACACTGCAGTGCCACGGAGTCTGGGACTGTTTGCGGCTGACCGTGCG
CCAAGAGGGCGTTAGGGGCTTGTACAAGGGCGTGGCCCCCACACTCCTTA
AGTCAAGCATGACGACGGCCCTGTACTTCAGCATTTACGATAAGCTCAAG
CAGGTGCGCTTCTAGAAGCTTTCTAGACCAT
BS09157.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:39:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tpc1-RA | 999 | CG6608-PA | 1..999 | 17..1015 | 4980 | 99.9 | Plus |
Tpc1-RB | 999 | CG6608-PB | 1..999 | 17..1015 | 4980 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:39:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tpc1-RA | 2062 | CG6608-RA | 627..1628 | 14..1015 | 4995 | 99.9 | Plus |
Tpc1-RB | 2161 | CG6608-RB | 726..1727 | 14..1015 | 4995 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:39:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10880006..10881007 | 1015..14 | 4995 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:39:19 has no hits.
BS09157.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:54:13 Download gff for
BS09157.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6608-RA | 605..1606 | 14..1015 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:42 Download gff for
BS09157.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tpc1-RB | 729..1727 | 17..1015 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:50 Download gff for
BS09157.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6608-RA | 608..1606 | 17..1015 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:59 Download gff for
BS09157.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tpc1-RB | 729..1727 | 17..1015 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:59 Download gff for
BS09157.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10880006..10881004 | 17..1015 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:42 Download gff for
BS09157.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6705728..6706726 | 17..1015 | 99 | | Minus |
BS09157.pep Sequence
Translation from 16 to 1014
> BS09157.pep
MAVTTGSTSEATTTTTPVPRRKHSTREQLHQMLAGGLSAAITRSTCQPLD
VLKIRFQLQVEPLGKNAAKEGPGALTSKYTSIGQAVKTIYREEGMLAFWK
GHNPAQVLSIMYGICQFWTYEQLSLMAKQTSYLADHQHLSNFLCGAAAGG
AAVIISTPLDVIRTRLIAQDTSKGYRNATRAVSAIVRQEGPRGMYRGLSS
ALLQITPLMGTNFMAYRLFSDWACAFLEVSDRSQLPTWTLLGLGASSGML
SKTIVYPFDLIKKRLQIQGFESNRQTFGQTLQCHGVWDCLRLTVRQEGVR
GLYKGVAPTLLKSSMTTALYFSIYDKLKQVRF*
BS09157.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:33:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tpc1-PA | 332 | CG6608-PA | 1..332 | 1..332 | 1708 | 100 | Plus |
Tpc1-PB | 332 | CG6608-PB | 1..332 | 1..332 | 1708 | 100 | Plus |
Tpc2-PB | 323 | CG2857-PB | 3..304 | 22..329 | 630 | 41.6 | Plus |
att-ORFA-PF | 365 | CG4241-PF | 51..351 | 4..328 | 299 | 25.5 | Plus |
att-ORFA-PC | 365 | CG4241-PC | 51..351 | 4..328 | 299 | 25.5 | Plus |
att-ORFA-PF | 365 | CG4241-PF | 162..353 | 22..222 | 160 | 28.2 | Plus |