Clone BS09159 Report

Search the DGRC for BS09159

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:91
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptCG10814-RA
Protein status:BS09159.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09159.3prime Sequence

896 bp (866 high quality bases) assembled on 2006-01-24

> BS09159.3prime
ATGGTCTAGAAAGCTTTCAGGTGGCTTTGGCATTCCGCAGGACCCTCAGG
CGCGAGTACACAATGTCCCAGTCAACGAAGGCGCCCAGAATGTGGCGCAC
ATTGCGGTCCGTGTCGTCGTACCCGGTACGTCCGTGGACCAGGCGCAAAT
TGTCGAACGTGAGCACGTCGCCGGGCGTGGTCTTGAATCTGCAGGAGTGC
TCGTGGGCCAGGCCCACAAAGGTGGCCATCGCCTCGTACCACGGACGCAC
CTGCTCCACCGGCACGCTAAAGTGGCTGTCGCGCTGCGGAATGCTGTGGT
TGATGCGCACACACCGGCCCTCCGCGTCCAAGTTGATGACCGGTGCCCTC
CAGATATTGTGAAACTGCAGATCGCCGTCGCTTCCGATGTCCGCCCAGTC
CACGGGAGTCTGGCAAAGAACCCGGAACTGCTCCGGATAGCGTTCCCTCA
TCACCTCCGCCACATAGAAGGCATCGGCCAGCAGATTGACACCCCCGGGC
GACGCGGACTGCTCCAAGGTGTGCAACATGGTCACTCCGGGCAGGTACTC
AAAGTAGGGCATATCCGTGTGTAGCGGGAGTGGTGCGGCCAAGTAGGCGT
AGTTGCTGCCTCCAGGCTGAGCCCGAACACTGAACTCCTCTCCATAGGTG
GTGCGCCTCATGAAGCCCACTCGGTTGGACAATCTCCGAAGGACGTCCAT
ATCGAGAGGGGCTTCCTTGACCATGGCCACTCCGTAAACTGCCAGATGCT
GGAGCCATTGCTGCAACGCCGAATCGCAATCGAGCAGTTCTTGGTAGTAG
AACACCTGACGGATTTTCTCAAAGTCCAGACCGCTCCACAACTTCTGCTC
CGGGCGGTAAAGTCACGCAGGTACGCTGGCGATTCGCGTATGAGAA

BS09159.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:21:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG10814-PA 1209 CG10814-RA 365..1209 861..17 4225 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG10814-RA 1458 CG10814-RA 371..1252 896..17 4360 99.8 Minus
CG5321-RC 1293 CG5321-RC 920..1244 366..42 260 73.2 Minus
CG5321-RB 1780 CG5321-RB 920..1244 366..42 260 73.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:33:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13376796..13377361 333..896 2730 99.6 Plus
2R 25286936 2R 13376181..13376496 17..332 1580 100 Plus
X 23542271 X 14680592..14680882 332..42 195 71.1 Minus
Blast to na_te.dros performed on 2015-02-03 08:33:36 has no hits.

BS09159.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:01:05 Download gff for BS09159.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10814-PA 330..1209 17..894 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:08:08 Download gff for BS09159.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10814-PA 330..1209 17..894 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:39:50 Download gff for BS09159.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10814-RA 371..1259 8..896 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:54:17 Download gff for BS09159.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10814-RA 371..1259 8..896 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:54:17 Download gff for BS09159.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13376174..13376496 8..332 98 <- Plus
2R 13376796..13377361 333..896 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:39:50 Download gff for BS09159.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9263679..9264001 8..332 98 <- Plus
arm_2R 9264301..9264866 333..896 99   Plus

BS09159.5prime Sequence

892 bp (827 high quality bases) assembled on 2006-01-24

> BS09159.5prime
GAAGTTATCAGTCGACATGTTCCAAGCGGACCGCCGAGATTTGCCCAGCC
AACCGCTTAAGTTGGCTCTGCCAAAGGAGCAGGATCAGTCGCGCCTGGTT
CAGGTTCCCGATCCTGATCGTCGGGACATGCAGTTTCCAGACATTTGGCT
GCGCGATAATTGCCGCTGCGAGGAGTGCTATCTGCCACAGACACTGAGTA
GATTGCCCCAGCTGTGGAACCATCTGGACACCAGTGTGCGGGTCCTGCGG
CAGAGCGTGGACGTGGACCAGAGGGTCCTGTGTATAGAGTGGTCCGATGG
ACATACCTCCCAGTATCCGTTCAGTTGGCTGAGGGAGCGGGACTTCTCAT
ACGCGAATCGCCAGCGTTACCTGCGTGACTTTTACCGCCCGGAGCAGAAG
TTGTGGAGCGGTCTGGACTTTGAGAAAATCCGTCAGGTGTTCTACTACCA
AGAACTGCTCGATTGCGATTCGGCGTTGCAGCAATGGCTCCAGCATCTGG
CAGTTTACGGAGTGGCCATGGTCAAGGAAGCCCCTCTCGATATGGACGTC
CTTCGGAGATTGTCCAACCGAGTGGGCTTCATGAGGCGCACCACCTATGG
AGAGGAGTTCAGTGTTCGGGCTCAGCCTGGAGGCAGCAACTACGCCTACT
TGGCCGCACCACTCCCGCTACACACGGATATGCCCTACTTTGAGTACCTG
CCCGGAGTGACCATGTTGCACACCTTGGAGCAGTCCGCGTCGCCCGGGGG
TGTCAATCTGCTGGCCGATGCCTTCTATGTGGCGGAGGTGATGAGGGAAC
GCTATCCGGAGCAGTTCCGGGTTCTTTGCCAGACTCCCGTGGACTGGGCG
GACATCGGAAGCGACGGCGATCTGCAGTTTCACAATATCTGG

BS09159.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:21:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG10814-PA 1209 CG10814-RA 1..876 17..892 4380 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG10814-RA 1458 CG10814-RA 44..919 17..892 4380 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13376813..13377688 892..17 4380 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:19:36 has no hits.

BS09159.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:01:06 Download gff for BS09159.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10814-PA 1..876 17..892 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:08:10 Download gff for BS09159.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10814-PA 1..876 17..892 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:31:06 Download gff for BS09159.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10814-RA 39..919 12..892 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:34:42 Download gff for BS09159.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10814-RA 39..919 12..892 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:34:42 Download gff for BS09159.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13376813..13377693 12..892 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:31:06 Download gff for BS09159.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9264318..9265198 12..892 99   Minus

BS09159.complete Sequence

1241 bp (1241 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636364

> BS09159.complete
GAAGTTATCAGTCGACATGTTCCAAGCGGACCGCCGAGATTTGCCCAGCC
AACCGCTTAAGTTGGCTCTGCCAAAGGAGCAGGATCAGTCGCGCCTGGTT
CAGGTTCCCGATCCTGATCGTCGGGACATGCAGTTTCCAGACATTTGGCT
GCGCGATAATTGCCGCTGCGAGGAGTGCTATCTGCCACAGACACTGAGTA
GATTGCCCCAGCTGTGGAACCATCTGGACACCAGTGTGCGGGTCCTGCGG
CAGAGCGTGGACGTGGACCAGAGGGTCCTGTGTATAGAGTGGTCCGATGG
ACATACCTCCCAGTATCCGTTCAGTTGGCTGAGGGAGCGGGACTTCTCAT
ACGCGAATCGCCAGCGTTACCTGCGTGACTTTTACCGCCCGGAGCAGAAG
TTGTGGAGCGGTCTGGACTTTGAGAAAATCCGTCAGGTGTTCTACTACCA
AGAACTGCTCGATTGCGATTCGGCGTTGCAGCAATGGCTCCAGCATCTGG
CAGTTTACGGAGTGGCCATGGTCAAGGAAGCCCCTCTCGATATGGACGTC
CTTCGGAGATTGTCCAACCGAGTGGGCTTCATGAGGCGCACCACCTATGG
AGAGGAGTTCAGTGTTCGGGCTCAGCCTGGAGGCAGCAACTACGCCTACT
TGGCCGCACCACTCCCGCTACACACGGATATGCCCTACTTTGAGTACCTG
CCCGGAGTGACCATGTTGCACACCTTGGAGCAGTCCGCGTCGCCCGGGGG
TGTCAATCTGCTGGCCGATGCCTTCTATGTGGCGGAGGTGATGAGGGAAC
GCTATCCGGAGCAGTTCCGGGTTCTTTGCCAGACTCCCGTGGACTGGGCG
GACATCGGAAGCGACGGCGATCTGCAGTTTCACAATATCTGGAGGGCACC
GGTCATCAACTTGGACGCGGAGGGCCGGTGTGTGCGCATCAACCACAGCA
TTCCGCAGCGCGACAGCCACTTTAGCGTGCCGGTGGAGCAGGTGCGTCCG
TGGTACGAGGCGATGGCCACCTTTGTGGGCCTGGCCCACGAGCACTCCTG
CAGATTCAAGACCACGCCCGGCGACGTGCTCACGTTCGACAATTTGCGCC
TGGTCCACGGACGTACCGGGTACGACGACACGGACCGCAATGTGCGCCAC
ATTCTGGGCGCCTTCGTTGACTGGGACATTGTGTACTCGCGCCTGAGGGT
CCTGCGGAATGCCAAAGCCACCTGAAAGCTTTCTAGACCAT

BS09159.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG10814-RA 1209 CG10814-PA 1..1209 17..1225 6045 100 Plus
CG5321-RC 1242 CG5321-PC 884..1208 876..1200 260 72 Plus
CG5321-RB 1242 CG5321-PB 884..1208 876..1200 260 72 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG10814-RA 1458 CG10814-RA 44..1252 17..1225 6045 100 Plus
CG5321-RC 1293 CG5321-RC 920..1244 876..1200 260 72 Plus
CG5321-RB 1780 CG5321-RB 920..1244 876..1200 260 72 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13376796..13377688 909..17 4465 100 Minus
2R 25286936 2R 13376181..13376496 1225..910 1580 100 Minus
X 23542271 X 14680592..14680882 910..1200 195 71.1 Plus
Blast to na_te.dros performed on 2014-11-27 13:40:45 has no hits.

BS09159.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:53 Download gff for BS09159.complete
Subject Subject Range Query Range Percent Splice Strand
CG10814-RA 1..1209 17..1225 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:25 Download gff for BS09159.complete
Subject Subject Range Query Range Percent Splice Strand
CG10814-RA 22..1242 12..1234 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:51 Download gff for BS09159.complete
Subject Subject Range Query Range Percent Splice Strand
CG10814-RA 49..1251 22..1224 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:53 Download gff for BS09159.complete
Subject Subject Range Query Range Percent Splice Strand
CG10814-RA 22..1242 12..1234 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:05 Download gff for BS09159.complete
Subject Subject Range Query Range Percent Splice Strand
CG10814-RA 49..1251 22..1224 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:05 Download gff for BS09159.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13376182..13376496 910..1224 100 <- Minus
2R 13376796..13377683 22..909 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:51 Download gff for BS09159.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9263687..9264001 910..1224 100 <- Minus
arm_2R 9264301..9265188 22..909 100   Minus

BS09159.pep Sequence

Translation from 16 to 1224

> BS09159.pep
MFQADRRDLPSQPLKLALPKEQDQSRLVQVPDPDRRDMQFPDIWLRDNCR
CEECYLPQTLSRLPQLWNHLDTSVRVLRQSVDVDQRVLCIEWSDGHTSQY
PFSWLRERDFSYANRQRYLRDFYRPEQKLWSGLDFEKIRQVFYYQELLDC
DSALQQWLQHLAVYGVAMVKEAPLDMDVLRRLSNRVGFMRRTTYGEEFSV
RAQPGGSNYAYLAAPLPLHTDMPYFEYLPGVTMLHTLEQSASPGGVNLLA
DAFYVAEVMRERYPEQFRVLCQTPVDWADIGSDGDLQFHNIWRAPVINLD
AEGRCVRINHSIPQRDSHFSVPVEQVRPWYEAMATFVGLAHEHSCRFKTT
PGDVLTFDNLRLVHGRTGYDDTDRNVRHILGAFVDWDIVYSRLRVLRNAK
AT*

BS09159.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG10814-PA 402 CG10814-PA 1..402 1..402 2173 100 Plus
CG5321-PC 413 CG5321-PC 32..405 23..397 1142 54.7 Plus
CG5321-PB 413 CG5321-PB 32..405 23..397 1142 54.7 Plus
CG14630-PA 406 CG14630-PA 30..405 28..400 959 46.4 Plus
CG4335-PA 364 CG4335-PA 11..360 36..396 316 25.1 Plus