Clone Sequence Records
BS09159.3prime Sequence
896 bp (866 high quality bases) assembled on 2006-01-24
> BS09159.3prime
ATGGTCTAGAAAGCTTTCAGGTGGCTTTGGCATTCCGCAGGACCCTCAGG
CGCGAGTACACAATGTCCCAGTCAACGAAGGCGCCCAGAATGTGGCGCAC
ATTGCGGTCCGTGTCGTCGTACCCGGTACGTCCGTGGACCAGGCGCAAAT
TGTCGAACGTGAGCACGTCGCCGGGCGTGGTCTTGAATCTGCAGGAGTGC
TCGTGGGCCAGGCCCACAAAGGTGGCCATCGCCTCGTACCACGGACGCAC
CTGCTCCACCGGCACGCTAAAGTGGCTGTCGCGCTGCGGAATGCTGTGGT
TGATGCGCACACACCGGCCCTCCGCGTCCAAGTTGATGACCGGTGCCCTC
CAGATATTGTGAAACTGCAGATCGCCGTCGCTTCCGATGTCCGCCCAGTC
CACGGGAGTCTGGCAAAGAACCCGGAACTGCTCCGGATAGCGTTCCCTCA
TCACCTCCGCCACATAGAAGGCATCGGCCAGCAGATTGACACCCCCGGGC
GACGCGGACTGCTCCAAGGTGTGCAACATGGTCACTCCGGGCAGGTACTC
AAAGTAGGGCATATCCGTGTGTAGCGGGAGTGGTGCGGCCAAGTAGGCGT
AGTTGCTGCCTCCAGGCTGAGCCCGAACACTGAACTCCTCTCCATAGGTG
GTGCGCCTCATGAAGCCCACTCGGTTGGACAATCTCCGAAGGACGTCCAT
ATCGAGAGGGGCTTCCTTGACCATGGCCACTCCGTAAACTGCCAGATGCT
GGAGCCATTGCTGCAACGCCGAATCGCAATCGAGCAGTTCTTGGTAGTAG
AACACCTGACGGATTTTCTCAAAGTCCAGACCGCTCCACAACTTCTGCTC
CGGGCGGTAAAGTCACGCAGGTACGCTGGCGATTCGCGTATGAGAA
BS09159.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:21:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10814-PA | 1209 | CG10814-RA | 365..1209 | 861..17 | 4225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:33:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10814-RA | 1458 | CG10814-RA | 371..1252 | 896..17 | 4360 | 99.8 | Minus |
CG5321-RC | 1293 | CG5321-RC | 920..1244 | 366..42 | 260 | 73.2 | Minus |
CG5321-RB | 1780 | CG5321-RB | 920..1244 | 366..42 | 260 | 73.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:33:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13376796..13377361 | 333..896 | 2730 | 99.6 | Plus |
2R | 25286936 | 2R | 13376181..13376496 | 17..332 | 1580 | 100 | Plus |
X | 23542271 | X | 14680592..14680882 | 332..42 | 195 | 71.1 | Minus |
Blast to na_te.dros performed on 2015-02-03 08:33:36 has no hits.
BS09159.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:01:05 Download gff for
BS09159.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10814-PA | 330..1209 | 17..894 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:08:08 Download gff for
BS09159.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10814-PA | 330..1209 | 17..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:39:50 Download gff for
BS09159.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10814-RA | 371..1259 | 8..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:54:17 Download gff for
BS09159.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10814-RA | 371..1259 | 8..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:54:17 Download gff for
BS09159.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13376174..13376496 | 8..332 | 98 | <- | Plus |
2R | 13376796..13377361 | 333..896 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:39:50 Download gff for
BS09159.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9263679..9264001 | 8..332 | 98 | <- | Plus |
arm_2R | 9264301..9264866 | 333..896 | 99 | | Plus |
BS09159.5prime Sequence
892 bp (827 high quality bases) assembled on 2006-01-24
> BS09159.5prime
GAAGTTATCAGTCGACATGTTCCAAGCGGACCGCCGAGATTTGCCCAGCC
AACCGCTTAAGTTGGCTCTGCCAAAGGAGCAGGATCAGTCGCGCCTGGTT
CAGGTTCCCGATCCTGATCGTCGGGACATGCAGTTTCCAGACATTTGGCT
GCGCGATAATTGCCGCTGCGAGGAGTGCTATCTGCCACAGACACTGAGTA
GATTGCCCCAGCTGTGGAACCATCTGGACACCAGTGTGCGGGTCCTGCGG
CAGAGCGTGGACGTGGACCAGAGGGTCCTGTGTATAGAGTGGTCCGATGG
ACATACCTCCCAGTATCCGTTCAGTTGGCTGAGGGAGCGGGACTTCTCAT
ACGCGAATCGCCAGCGTTACCTGCGTGACTTTTACCGCCCGGAGCAGAAG
TTGTGGAGCGGTCTGGACTTTGAGAAAATCCGTCAGGTGTTCTACTACCA
AGAACTGCTCGATTGCGATTCGGCGTTGCAGCAATGGCTCCAGCATCTGG
CAGTTTACGGAGTGGCCATGGTCAAGGAAGCCCCTCTCGATATGGACGTC
CTTCGGAGATTGTCCAACCGAGTGGGCTTCATGAGGCGCACCACCTATGG
AGAGGAGTTCAGTGTTCGGGCTCAGCCTGGAGGCAGCAACTACGCCTACT
TGGCCGCACCACTCCCGCTACACACGGATATGCCCTACTTTGAGTACCTG
CCCGGAGTGACCATGTTGCACACCTTGGAGCAGTCCGCGTCGCCCGGGGG
TGTCAATCTGCTGGCCGATGCCTTCTATGTGGCGGAGGTGATGAGGGAAC
GCTATCCGGAGCAGTTCCGGGTTCTTTGCCAGACTCCCGTGGACTGGGCG
GACATCGGAAGCGACGGCGATCTGCAGTTTCACAATATCTGG
BS09159.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:21:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10814-PA | 1209 | CG10814-RA | 1..876 | 17..892 | 4380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:19:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10814-RA | 1458 | CG10814-RA | 44..919 | 17..892 | 4380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:19:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13376813..13377688 | 892..17 | 4380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:19:36 has no hits.
BS09159.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:01:06 Download gff for
BS09159.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10814-PA | 1..876 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:08:10 Download gff for
BS09159.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10814-PA | 1..876 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:31:06 Download gff for
BS09159.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10814-RA | 39..919 | 12..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:34:42 Download gff for
BS09159.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10814-RA | 39..919 | 12..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:34:42 Download gff for
BS09159.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13376813..13377693 | 12..892 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:31:06 Download gff for
BS09159.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9264318..9265198 | 12..892 | 99 | | Minus |
BS09159.complete Sequence
1241 bp (1241 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636364
> BS09159.complete
GAAGTTATCAGTCGACATGTTCCAAGCGGACCGCCGAGATTTGCCCAGCC
AACCGCTTAAGTTGGCTCTGCCAAAGGAGCAGGATCAGTCGCGCCTGGTT
CAGGTTCCCGATCCTGATCGTCGGGACATGCAGTTTCCAGACATTTGGCT
GCGCGATAATTGCCGCTGCGAGGAGTGCTATCTGCCACAGACACTGAGTA
GATTGCCCCAGCTGTGGAACCATCTGGACACCAGTGTGCGGGTCCTGCGG
CAGAGCGTGGACGTGGACCAGAGGGTCCTGTGTATAGAGTGGTCCGATGG
ACATACCTCCCAGTATCCGTTCAGTTGGCTGAGGGAGCGGGACTTCTCAT
ACGCGAATCGCCAGCGTTACCTGCGTGACTTTTACCGCCCGGAGCAGAAG
TTGTGGAGCGGTCTGGACTTTGAGAAAATCCGTCAGGTGTTCTACTACCA
AGAACTGCTCGATTGCGATTCGGCGTTGCAGCAATGGCTCCAGCATCTGG
CAGTTTACGGAGTGGCCATGGTCAAGGAAGCCCCTCTCGATATGGACGTC
CTTCGGAGATTGTCCAACCGAGTGGGCTTCATGAGGCGCACCACCTATGG
AGAGGAGTTCAGTGTTCGGGCTCAGCCTGGAGGCAGCAACTACGCCTACT
TGGCCGCACCACTCCCGCTACACACGGATATGCCCTACTTTGAGTACCTG
CCCGGAGTGACCATGTTGCACACCTTGGAGCAGTCCGCGTCGCCCGGGGG
TGTCAATCTGCTGGCCGATGCCTTCTATGTGGCGGAGGTGATGAGGGAAC
GCTATCCGGAGCAGTTCCGGGTTCTTTGCCAGACTCCCGTGGACTGGGCG
GACATCGGAAGCGACGGCGATCTGCAGTTTCACAATATCTGGAGGGCACC
GGTCATCAACTTGGACGCGGAGGGCCGGTGTGTGCGCATCAACCACAGCA
TTCCGCAGCGCGACAGCCACTTTAGCGTGCCGGTGGAGCAGGTGCGTCCG
TGGTACGAGGCGATGGCCACCTTTGTGGGCCTGGCCCACGAGCACTCCTG
CAGATTCAAGACCACGCCCGGCGACGTGCTCACGTTCGACAATTTGCGCC
TGGTCCACGGACGTACCGGGTACGACGACACGGACCGCAATGTGCGCCAC
ATTCTGGGCGCCTTCGTTGACTGGGACATTGTGTACTCGCGCCTGAGGGT
CCTGCGGAATGCCAAAGCCACCTGAAAGCTTTCTAGACCAT
BS09159.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10814-RA | 1209 | CG10814-PA | 1..1209 | 17..1225 | 6045 | 100 | Plus |
CG5321-RC | 1242 | CG5321-PC | 884..1208 | 876..1200 | 260 | 72 | Plus |
CG5321-RB | 1242 | CG5321-PB | 884..1208 | 876..1200 | 260 | 72 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10814-RA | 1458 | CG10814-RA | 44..1252 | 17..1225 | 6045 | 100 | Plus |
CG5321-RC | 1293 | CG5321-RC | 920..1244 | 876..1200 | 260 | 72 | Plus |
CG5321-RB | 1780 | CG5321-RB | 920..1244 | 876..1200 | 260 | 72 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13376796..13377688 | 909..17 | 4465 | 100 | Minus |
2R | 25286936 | 2R | 13376181..13376496 | 1225..910 | 1580 | 100 | Minus |
X | 23542271 | X | 14680592..14680882 | 910..1200 | 195 | 71.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:40:45 has no hits.
BS09159.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:53 Download gff for
BS09159.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10814-RA | 1..1209 | 17..1225 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:25 Download gff for
BS09159.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10814-RA | 22..1242 | 12..1234 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:51 Download gff for
BS09159.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10814-RA | 49..1251 | 22..1224 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:53 Download gff for
BS09159.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10814-RA | 22..1242 | 12..1234 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:05 Download gff for
BS09159.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10814-RA | 49..1251 | 22..1224 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:05 Download gff for
BS09159.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13376182..13376496 | 910..1224 | 100 | <- | Minus |
2R | 13376796..13377683 | 22..909 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:51 Download gff for
BS09159.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9263687..9264001 | 910..1224 | 100 | <- | Minus |
arm_2R | 9264301..9265188 | 22..909 | 100 | | Minus |
BS09159.pep Sequence
Translation from 16 to 1224
> BS09159.pep
MFQADRRDLPSQPLKLALPKEQDQSRLVQVPDPDRRDMQFPDIWLRDNCR
CEECYLPQTLSRLPQLWNHLDTSVRVLRQSVDVDQRVLCIEWSDGHTSQY
PFSWLRERDFSYANRQRYLRDFYRPEQKLWSGLDFEKIRQVFYYQELLDC
DSALQQWLQHLAVYGVAMVKEAPLDMDVLRRLSNRVGFMRRTTYGEEFSV
RAQPGGSNYAYLAAPLPLHTDMPYFEYLPGVTMLHTLEQSASPGGVNLLA
DAFYVAEVMRERYPEQFRVLCQTPVDWADIGSDGDLQFHNIWRAPVINLD
AEGRCVRINHSIPQRDSHFSVPVEQVRPWYEAMATFVGLAHEHSCRFKTT
PGDVLTFDNLRLVHGRTGYDDTDRNVRHILGAFVDWDIVYSRLRVLRNAK
AT*
BS09159.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10814-PA | 402 | CG10814-PA | 1..402 | 1..402 | 2173 | 100 | Plus |
CG5321-PC | 413 | CG5321-PC | 32..405 | 23..397 | 1142 | 54.7 | Plus |
CG5321-PB | 413 | CG5321-PB | 32..405 | 23..397 | 1142 | 54.7 | Plus |
CG14630-PA | 406 | CG14630-PA | 30..405 | 28..400 | 959 | 46.4 | Plus |
CG4335-PA | 364 | CG4335-PA | 11..360 | 36..396 | 316 | 25.1 | Plus |