Clone BS09166 Report

Search the DGRC for BS09166

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:91
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptCG17754-RA
Protein status:BS09166.pep: full length peptide match
Sequenced Size:1997

Clone Sequence Records

BS09166.3prime Sequence

922 bp (832 high quality bases) assembled on 2006-01-24

> BS09166.3prime
ATGGTCTAGAAAGCTTTTACATGTTATAGTAGTCGACAAACTCGACACAT
CTGGGACGCCTATTATAGCAGATTGGATCCAATCTCACTGGCTTCCACTT
CTTCTTTTTTGTAGCACTGGGCGGCGGCTGTTGAGCCGCCGGCGGTATGA
CATTCGGAATCGCCACCACACAGGCGCCGGCCCTTGCGAAAGCCATGGGC
GCCAGCTCGTTCCATCCATTGCGCACCGGGTCGTACTCCTCGACGCTCTT
CAGCGCATGATTGCCATCGTAGCCGCCGACGACGATCAGGCGATCGCCCA
GCAGGGCACAGCCGATCGCGTCCCGGCCCAAAGCCAGTGAGCAGATCAGA
GTCCAGGTATCGGTGGCTGGGTCGTAGCGCTCCACCGTCTCCGTGCGGCA
GACCATTGGATTGCTGGCCGGACAGTCGTGGCCACCCAAGGCGTACAGGA
AACCATTGGCCACCGTCACGCCAACGCCGCCGCGTCTCCTGTTCATCGGC
GCCAGTAGGCTCCATTTGTTCGTGTGCGGATCGTAGCACTCGATGGAGCG
ATGACAGACGGAACCATCACGTCCGCCCACCGCATACAGGCGACCGCCCA
GGACAGCCACGCCGGCGGTGGAACGCATCGAGGACATGGGTGCCACATAG
CTCCAAGTGCGCGCTATGGGATCCCATCTCTCCACGGTGTTCAGGTAGCT
CCAGCCGTCGTGACCGCCCACCGCATAGAGTGGACCCTCCAGCACCGCCA
CGCCCAGTCCATGACGGGGTGTGGCCATGGCATTGAGCGGTGCCCAGGCC
ATTGTATTCAGGTCCAAACTCTCTACGGTGTTCAGGGTCTTTAGCCCATC
ACGTCCGCCCACTAGGATCAGTTTATCCTCCATGACAGCAGCGCCGAAAT
GCAGTCGACGACCGGTCATGTG

BS09166.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG17754-PC 1965 CG17754-RC 1060..1965 922..17 4505 99.8 Minus
CG17754-PA 1965 CG17754-RA 1060..1965 922..17 4505 99.8 Minus
CG17754-PD 1878 CG17754-RD 1060..1872 922..110 4040 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG17754-RE 1972 CG17754-RE 985..1895 922..12 4525 99.8 Minus
CG17754-RA 2397 CG17754-RA 1410..2320 922..12 4525 99.8 Minus
CG17754-RC 2333 CG17754-RC 1346..2256 922..12 4525 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:28:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9253327..9253571 922..678 1210 99.6 Minus
X 23542271 X 9254112..9254349 347..110 1190 100 Minus
X 23542271 X 9253649..9253862 679..466 1070 100 Minus
X 23542271 X 9253917..9254039 469..347 615 100 Minus
X 23542271 X 9255628..9255725 109..12 475 99 Minus
Blast to na_te.dros performed on 2015-01-31 14:28:36 has no hits.

BS09166.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:01:20 Download gff for BS09166.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17754-PC 1060..1965 17..922 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:08:30 Download gff for BS09166.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17754-PA 1060..1965 17..922 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:06:40 Download gff for BS09166.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17754-RC 1346..2256 12..922 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:29:33 Download gff for BS09166.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17754-RC 1346..2256 12..922 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:29:33 Download gff for BS09166.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9253327..9253571 678..922 99 -> Minus
X 9253651..9253858 470..677 100 -> Minus
X 9253917..9254039 347..469 100 -> Minus
X 9254113..9254349 110..346 100 -> Minus
X 9255628..9255725 12..109 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:06:40 Download gff for BS09166.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9147360..9147604 678..922 99 -> Minus
arm_X 9147684..9147891 470..677 100 -> Minus
arm_X 9147950..9148072 347..469 100 -> Minus
arm_X 9148146..9148382 110..346 100 -> Minus
arm_X 9149661..9149758 12..109 98   Minus

BS09166.5prime Sequence

865 bp (753 high quality bases) assembled on 2006-01-24

> BS09166.5prime
GAAGTTATCAGTCGACATGTCGGCGGTGAACCAGAAGGAGAGTCCCAGCC
GGGACTCGACGGCCTCCACATCCGGGCACATATCGATGCTGGCTGACAAC
ACATTGGAATCGCTGTCGCGGGACTACAGCCTGGGCAGCTTGAACTCGGC
GGGCAGCCAGGATGAGTTCTTTCGCTGCCGAGACCATGCGGACAATATAC
TCAAACGGATGCAGCTCTACGTGGATAGCCAGCAGCTGTGCGATGTGGTC
CTAATCGCTGGCATCGATGGAAAGAGGGTGCCCGCCCACCGCCTGGTGCT
ATCGGCGTCGAGCGCCTACTTCTCGGCCATGTTCACGGGATCGCTGCGCG
AGACCAAGGAACAGGAGGTGACCCTCGGTGAAGTGCACGGCGATGCACTG
CATCTGCTGGTCCAGTACTGCTACACCGGGTTCATTGAGATGCGCGAGGA
CACCGTGGAGACGCTGCTGGCCACCGCCTGTCTGCTGCAGCTGAATGCCG
TGGTGACCGCCTGCTGCAACTTCCTGGCCCGCCAGCTCCATCCATCCAAC
TGCCTTGGGTTCGCCTTCTTTGCGGAGCAACAGAGCTGCACCACGCTGCT
GCGTCTGGCGCAGGCCTACACCTGCCAGTACTTTATGCAGGTGTGCCAGA
ATCAGGAGTTCTTCCAGCTGAACGCCGATCAGTTGGGCAAGCTGCTTAGC
AGCGATGATCTCAATGTGCCCTCGGAGCAGGATGTCTTTCACAGTCTGAT
GTCGTGGGTGCGCCACGATTCCGCTGCCCGTGAGCAGCACATACCGGAGC
TGTTGGCCCTGGTGCGACTGCCCCTACTGCAGCCAGCGTTTATCATGGAC
CACGTGGAGAACGTT

BS09166.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:21:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG17754-PC 1965 CG17754-RC 1..849 17..865 4245 100 Plus
CG17754-PD 1878 CG17754-RD 1..849 17..865 4245 100 Plus
CG17754-PA 1965 CG17754-RA 1..849 17..865 4245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG17754-RG 2539 CG17754-RG 350..1199 16..865 4250 100 Plus
CG17754-RF 2972 CG17754-RF 350..1199 16..865 4250 100 Plus
CG17754-RA 2397 CG17754-RA 350..1199 16..865 4250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9252526..9253116 275..865 2955 100 Plus
X 23542271 X 9250769..9251030 16..277 1310 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:20:35 has no hits.

BS09166.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:01:21 Download gff for BS09166.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17754-PC 1..849 17..865 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:08:30 Download gff for BS09166.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17754-PA 1..849 17..865 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:47:35 Download gff for BS09166.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17754-RA 350..1199 16..865 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:34:08 Download gff for BS09166.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17754-RA 350..1199 16..865 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:34:08 Download gff for BS09166.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9250769..9251029 16..276 100 -> Plus
X 9252528..9253116 277..865 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:47:35 Download gff for BS09166.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9144802..9145062 16..276 100 -> Plus
arm_X 9146561..9147149 277..865 100   Plus

BS09166.complete Sequence

1997 bp assembled on 2009-08-24

GenBank Submission: KX802372

> BS09166.complete
GAAGTTATCAGTCGACATGTCGGCGGTGAACCAGAAGGAGAGTCCCAGCC
GGGACTCGACGGCCTCCACATCCGGGCACATATCGATGCTGGCTGACAAC
ACATTGGAATCGCTGTCGCGGGACTACAGCCTGGGCAGCTTGAACTCGGC
GGGCAGCCAGGATGAGTTCTTTCGCTGCCGAGACCATGCGGACAATATAC
TCAAACGGATGCAGCTCTACGTGGATAGCCAGCAGCTGTGCGATGTGGTC
CTAATCGCTGGCATCGATGGAAAGAGGGTGCCCGCCCACCGCCTGGTGCT
ATCGGCGTCGAGCGCCTACTTCTCGGCCATGTTCACGGGATCGCTGCGCG
AGACCAAGGAACAGGAGGTGACCCTCGGTGAAGTGCACGGCGATGCACTG
CATCTGCTGGTCCAGTACTGCTACACCGGGTTCATTGAGATGCGCGAGGA
CACCGTGGAGACGCTGCTGGCCACCGCCTGTCTGCTGCAGCTGAATGCCG
TGGTGACCGCCTGCTGCAACTTCCTGGCCCGCCAGCTCCATCCATCCAAC
TGCCTTGGGTTCGCCTTCTTTGCGGAGCAACAGAGCTGCACCACGCTGCT
GCGTCTGGCGCAGGCCTACACCTGCCAGTACTTTATGCAGGTGTGCCAGA
ATCAGGAGTTCTTCCAGCTGAACGCCGATCAGTTGGGCAAGCTGCTTAGC
AGCGATGATCTCAATGTGCCCTCGGAGCAGGATGTCTTTCACAGTCTGAT
GTCGTGGGTGCGCCACGATTCCGCTGCCCGTGAGCAGCACATACCGGAGC
TGTTGGCCCTGGTGCGACTGCCCCTACTGCAGCCAGCGTTTATCATGGAC
CACGTGGAGAACGTTTGCAATGCCAACGAGTGCCAGCAGCTGGTTATGGA
GGCATTCAAGTGGCACCTGATGCCCGAGCGCCGATCCCGGATAGCCACCG
AGCGAACAACGCCGCGCAAATCCACGGTGGGTCGTCTCCTGGCCGTCGGC
GGCATGGATGCCCACAAGGGCGCCATCAGCATCGAGAGCTACTGCCCGCG
TTTGGACAAGTGGACACCGTGGAAGCACATGACCGGTCGTCGACTGCAAT
TCGGCGCTGCTGTCATGGAGGATAAACTGATCCTAGTGGGCGGACGTGAT
GGGCTAAAGACCCTGAACACCGTAGAGAGTTTGGACCTGAATACAATGGC
CTGGGCACCGCTCAATGCCATGGCCACACCCCGTCATGGACTGGGCGTGG
CGGTGCTGGAGGGTCCACTCTATGCGGTGGGCGGTCACGACGGCTGGAGC
TACCTGAACACCGTGGAGAGATGGGATCCCATAGCGCGCACTTGGAGCTA
TGTGGCACCCATGTCCTCGATGCGTTCCACCGCCGGCGTGGCTGTCCTGG
GCGGTCGCCTGTATGCGGTGGGCGGACGTGATGGTTCCGTCTGTCATCGC
TCCATCGAGTGCTACGATCCGCACACGAACAAATGGAGCCTACTGGCGCC
GATGAACAGGAGACGCGGCGGCGTTGGCGTGACGGTGGCCAATGGTTTCC
TGTACGCCTTGGGTGGCCACGACTGTCCGGCCAGCAATCCAATGGTCTGC
CGCACGGAGACGGTGGAGCGCTACGACCCAGCCACCGATACCTGGACTCT
GATCTGCTCACTGGCTTTGGGCCGGGACGCGATCGGCTGTGCCCTGCTGG
GCGATCGCCTGATCGTCGTCGGCGGCTACGATGGCAATCATGCGCTGAAG
AGCGTCGAGGAGTACGACCCGGTGCGCAATGGATGGAACGAGCTGGCGCC
CATGGCTTTCGCAAGGGCCGGCGCCTGTGTGGTGGCGATTCCGAATGTCA
TACCGCCGGCGGCTCAACAGCCGCCGCCCAGTGCTACAAAAAAGAAGAAG
TGGAAGCCAGTGAGATTGGATCCAATCTGCTATAATAGGCGTCCCAGATG
TGTCGAGTTTGTCGACTACTATAACATGTAAAAGCTTTCTAGACCAT

BS09166.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG17754-RA 1965 CG17754-PA 1..1965 17..1981 9825 100 Plus
CG17754-RC 1965 CG17754-PC 1..1965 17..1981 9825 100 Plus
CG17754-RG 1956 CG17754-PG 1..1956 17..1981 9655 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG17754-RA 2397 CG17754-RA 350..2320 16..1986 9840 99.9 Plus
CG17754-RC 2333 CG17754-RC 286..2256 16..1986 9840 99.9 Plus
CG17754-RG 2539 CG17754-RG 350..2311 16..1986 9670 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9252526..9253571 275..1320 5230 100 Plus
X 23542271 X 9250769..9251030 16..277 1310 100 Plus
X 23542271 X 9254112..9254349 1651..1888 1190 100 Plus
X 23542271 X 9253649..9253862 1319..1532 1070 100 Plus
X 23542271 X 9253917..9254039 1529..1651 615 100 Plus
X 23542271 X 9255628..9255725 1889..1986 475 99 Plus
Blast to na_te.dros performed on 2014-11-28 01:33:40 has no hits.

BS09166.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:08 Download gff for BS09166.complete
Subject Subject Range Query Range Percent Splice Strand
CG17754-RA 327..2289 17..1979 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:05 Download gff for BS09166.complete
Subject Subject Range Query Range Percent Splice Strand
CG17754-RC 287..2249 17..1979 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:26 Download gff for BS09166.complete
Subject Subject Range Query Range Percent Splice Strand
CG17754-RC 287..2249 17..1979 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:26 Download gff for BS09166.complete
Subject Subject Range Query Range Percent Splice Strand
X 9250770..9251029 17..276 100 -> Plus
X 9252528..9253571 277..1320 100 -> Plus
X 9253651..9253858 1321..1528 100 -> Plus
X 9253917..9254039 1529..1651 100 -> Plus
X 9254113..9254349 1652..1888 100 -> Plus
X 9255628..9255718 1889..1979 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:05 Download gff for BS09166.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9144803..9145062 17..276 100 -> Plus
arm_X 9146561..9147604 277..1320 100 -> Plus
arm_X 9147684..9147891 1321..1528 100 -> Plus
arm_X 9147950..9148072 1529..1651 100 -> Plus
arm_X 9148146..9148382 1652..1888 100 -> Plus
arm_X 9149661..9149751 1889..1979 100   Plus

BS09166.pep Sequence

Translation from 16 to 1980

> BS09166.pep
MSAVNQKESPSRDSTASTSGHISMLADNTLESLSRDYSLGSLNSAGSQDE
FFRCRDHADNILKRMQLYVDSQQLCDVVLIAGIDGKRVPAHRLVLSASSA
YFSAMFTGSLRETKEQEVTLGEVHGDALHLLVQYCYTGFIEMREDTVETL
LATACLLQLNAVVTACCNFLARQLHPSNCLGFAFFAEQQSCTTLLRLAQA
YTCQYFMQVCQNQEFFQLNADQLGKLLSSDDLNVPSEQDVFHSLMSWVRH
DSAAREQHIPELLALVRLPLLQPAFIMDHVENVCNANECQQLVMEAFKWH
LMPERRSRIATERTTPRKSTVGRLLAVGGMDAHKGAISIESYCPRLDKWT
PWKHMTGRRLQFGAAVMEDKLILVGGRDGLKTLNTVESLDLNTMAWAPLN
AMATPRHGLGVAVLEGPLYAVGGHDGWSYLNTVERWDPIARTWSYVAPMS
SMRSTAGVAVLGGRLYAVGGRDGSVCHRSIECYDPHTNKWSLLAPMNRRR
GGVGVTVANGFLYALGGHDCPASNPMVCRTETVERYDPATDTWTLICSLA
LGRDAIGCALLGDRLIVVGGYDGNHALKSVEEYDPVRNGWNELAPMAFAR
AGACVVAIPNVIPPAAQQPPPSATKKKKWKPVRLDPICYNRRPRCVEFVD
YYNM*

BS09166.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG17754-PA 654 CG17754-PA 1..654 1..654 3473 100 Plus
CG17754-PC 654 CG17754-PC 1..654 1..654 3473 100 Plus
CG17754-PG 651 CG17754-PG 1..651 1..654 3444 99.5 Plus
CG17754-PF 625 CG17754-PF 1..624 1..624 3297 100 Plus
CG17754-PD 625 CG17754-PD 1..624 1..624 3297 100 Plus