Clone Sequence Records
BS09166.3prime Sequence
922 bp (832 high quality bases) assembled on 2006-01-24
> BS09166.3prime
ATGGTCTAGAAAGCTTTTACATGTTATAGTAGTCGACAAACTCGACACAT
CTGGGACGCCTATTATAGCAGATTGGATCCAATCTCACTGGCTTCCACTT
CTTCTTTTTTGTAGCACTGGGCGGCGGCTGTTGAGCCGCCGGCGGTATGA
CATTCGGAATCGCCACCACACAGGCGCCGGCCCTTGCGAAAGCCATGGGC
GCCAGCTCGTTCCATCCATTGCGCACCGGGTCGTACTCCTCGACGCTCTT
CAGCGCATGATTGCCATCGTAGCCGCCGACGACGATCAGGCGATCGCCCA
GCAGGGCACAGCCGATCGCGTCCCGGCCCAAAGCCAGTGAGCAGATCAGA
GTCCAGGTATCGGTGGCTGGGTCGTAGCGCTCCACCGTCTCCGTGCGGCA
GACCATTGGATTGCTGGCCGGACAGTCGTGGCCACCCAAGGCGTACAGGA
AACCATTGGCCACCGTCACGCCAACGCCGCCGCGTCTCCTGTTCATCGGC
GCCAGTAGGCTCCATTTGTTCGTGTGCGGATCGTAGCACTCGATGGAGCG
ATGACAGACGGAACCATCACGTCCGCCCACCGCATACAGGCGACCGCCCA
GGACAGCCACGCCGGCGGTGGAACGCATCGAGGACATGGGTGCCACATAG
CTCCAAGTGCGCGCTATGGGATCCCATCTCTCCACGGTGTTCAGGTAGCT
CCAGCCGTCGTGACCGCCCACCGCATAGAGTGGACCCTCCAGCACCGCCA
CGCCCAGTCCATGACGGGGTGTGGCCATGGCATTGAGCGGTGCCCAGGCC
ATTGTATTCAGGTCCAAACTCTCTACGGTGTTCAGGGTCTTTAGCCCATC
ACGTCCGCCCACTAGGATCAGTTTATCCTCCATGACAGCAGCGCCGAAAT
GCAGTCGACGACCGGTCATGTG
BS09166.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:21:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17754-PC | 1965 | CG17754-RC | 1060..1965 | 922..17 | 4505 | 99.8 | Minus |
CG17754-PA | 1965 | CG17754-RA | 1060..1965 | 922..17 | 4505 | 99.8 | Minus |
CG17754-PD | 1878 | CG17754-RD | 1060..1872 | 922..110 | 4040 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:28:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17754-RE | 1972 | CG17754-RE | 985..1895 | 922..12 | 4525 | 99.8 | Minus |
CG17754-RA | 2397 | CG17754-RA | 1410..2320 | 922..12 | 4525 | 99.8 | Minus |
CG17754-RC | 2333 | CG17754-RC | 1346..2256 | 922..12 | 4525 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:28:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9253327..9253571 | 922..678 | 1210 | 99.6 | Minus |
X | 23542271 | X | 9254112..9254349 | 347..110 | 1190 | 100 | Minus |
X | 23542271 | X | 9253649..9253862 | 679..466 | 1070 | 100 | Minus |
X | 23542271 | X | 9253917..9254039 | 469..347 | 615 | 100 | Minus |
X | 23542271 | X | 9255628..9255725 | 109..12 | 475 | 99 | Minus |
Blast to na_te.dros performed on 2015-01-31 14:28:36 has no hits.
BS09166.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:01:20 Download gff for
BS09166.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17754-PC | 1060..1965 | 17..922 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:08:30 Download gff for
BS09166.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17754-PA | 1060..1965 | 17..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:06:40 Download gff for
BS09166.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17754-RC | 1346..2256 | 12..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:29:33 Download gff for
BS09166.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17754-RC | 1346..2256 | 12..922 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:29:33 Download gff for
BS09166.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9253327..9253571 | 678..922 | 99 | -> | Minus |
X | 9253651..9253858 | 470..677 | 100 | -> | Minus |
X | 9253917..9254039 | 347..469 | 100 | -> | Minus |
X | 9254113..9254349 | 110..346 | 100 | -> | Minus |
X | 9255628..9255725 | 12..109 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:06:40 Download gff for
BS09166.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9147360..9147604 | 678..922 | 99 | -> | Minus |
arm_X | 9147684..9147891 | 470..677 | 100 | -> | Minus |
arm_X | 9147950..9148072 | 347..469 | 100 | -> | Minus |
arm_X | 9148146..9148382 | 110..346 | 100 | -> | Minus |
arm_X | 9149661..9149758 | 12..109 | 98 | | Minus |
BS09166.5prime Sequence
865 bp (753 high quality bases) assembled on 2006-01-24
> BS09166.5prime
GAAGTTATCAGTCGACATGTCGGCGGTGAACCAGAAGGAGAGTCCCAGCC
GGGACTCGACGGCCTCCACATCCGGGCACATATCGATGCTGGCTGACAAC
ACATTGGAATCGCTGTCGCGGGACTACAGCCTGGGCAGCTTGAACTCGGC
GGGCAGCCAGGATGAGTTCTTTCGCTGCCGAGACCATGCGGACAATATAC
TCAAACGGATGCAGCTCTACGTGGATAGCCAGCAGCTGTGCGATGTGGTC
CTAATCGCTGGCATCGATGGAAAGAGGGTGCCCGCCCACCGCCTGGTGCT
ATCGGCGTCGAGCGCCTACTTCTCGGCCATGTTCACGGGATCGCTGCGCG
AGACCAAGGAACAGGAGGTGACCCTCGGTGAAGTGCACGGCGATGCACTG
CATCTGCTGGTCCAGTACTGCTACACCGGGTTCATTGAGATGCGCGAGGA
CACCGTGGAGACGCTGCTGGCCACCGCCTGTCTGCTGCAGCTGAATGCCG
TGGTGACCGCCTGCTGCAACTTCCTGGCCCGCCAGCTCCATCCATCCAAC
TGCCTTGGGTTCGCCTTCTTTGCGGAGCAACAGAGCTGCACCACGCTGCT
GCGTCTGGCGCAGGCCTACACCTGCCAGTACTTTATGCAGGTGTGCCAGA
ATCAGGAGTTCTTCCAGCTGAACGCCGATCAGTTGGGCAAGCTGCTTAGC
AGCGATGATCTCAATGTGCCCTCGGAGCAGGATGTCTTTCACAGTCTGAT
GTCGTGGGTGCGCCACGATTCCGCTGCCCGTGAGCAGCACATACCGGAGC
TGTTGGCCCTGGTGCGACTGCCCCTACTGCAGCCAGCGTTTATCATGGAC
CACGTGGAGAACGTT
BS09166.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:21:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17754-PC | 1965 | CG17754-RC | 1..849 | 17..865 | 4245 | 100 | Plus |
CG17754-PD | 1878 | CG17754-RD | 1..849 | 17..865 | 4245 | 100 | Plus |
CG17754-PA | 1965 | CG17754-RA | 1..849 | 17..865 | 4245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:20:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17754-RG | 2539 | CG17754-RG | 350..1199 | 16..865 | 4250 | 100 | Plus |
CG17754-RF | 2972 | CG17754-RF | 350..1199 | 16..865 | 4250 | 100 | Plus |
CG17754-RA | 2397 | CG17754-RA | 350..1199 | 16..865 | 4250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:20:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9252526..9253116 | 275..865 | 2955 | 100 | Plus |
X | 23542271 | X | 9250769..9251030 | 16..277 | 1310 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:20:35 has no hits.
BS09166.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:01:21 Download gff for
BS09166.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17754-PC | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:08:30 Download gff for
BS09166.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17754-PA | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:47:35 Download gff for
BS09166.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17754-RA | 350..1199 | 16..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:34:08 Download gff for
BS09166.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17754-RA | 350..1199 | 16..865 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:34:08 Download gff for
BS09166.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9250769..9251029 | 16..276 | 100 | -> | Plus |
X | 9252528..9253116 | 277..865 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:47:35 Download gff for
BS09166.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9144802..9145062 | 16..276 | 100 | -> | Plus |
arm_X | 9146561..9147149 | 277..865 | 100 | | Plus |
BS09166.complete Sequence
1997 bp assembled on 2009-08-24
GenBank Submission: KX802372
> BS09166.complete
GAAGTTATCAGTCGACATGTCGGCGGTGAACCAGAAGGAGAGTCCCAGCC
GGGACTCGACGGCCTCCACATCCGGGCACATATCGATGCTGGCTGACAAC
ACATTGGAATCGCTGTCGCGGGACTACAGCCTGGGCAGCTTGAACTCGGC
GGGCAGCCAGGATGAGTTCTTTCGCTGCCGAGACCATGCGGACAATATAC
TCAAACGGATGCAGCTCTACGTGGATAGCCAGCAGCTGTGCGATGTGGTC
CTAATCGCTGGCATCGATGGAAAGAGGGTGCCCGCCCACCGCCTGGTGCT
ATCGGCGTCGAGCGCCTACTTCTCGGCCATGTTCACGGGATCGCTGCGCG
AGACCAAGGAACAGGAGGTGACCCTCGGTGAAGTGCACGGCGATGCACTG
CATCTGCTGGTCCAGTACTGCTACACCGGGTTCATTGAGATGCGCGAGGA
CACCGTGGAGACGCTGCTGGCCACCGCCTGTCTGCTGCAGCTGAATGCCG
TGGTGACCGCCTGCTGCAACTTCCTGGCCCGCCAGCTCCATCCATCCAAC
TGCCTTGGGTTCGCCTTCTTTGCGGAGCAACAGAGCTGCACCACGCTGCT
GCGTCTGGCGCAGGCCTACACCTGCCAGTACTTTATGCAGGTGTGCCAGA
ATCAGGAGTTCTTCCAGCTGAACGCCGATCAGTTGGGCAAGCTGCTTAGC
AGCGATGATCTCAATGTGCCCTCGGAGCAGGATGTCTTTCACAGTCTGAT
GTCGTGGGTGCGCCACGATTCCGCTGCCCGTGAGCAGCACATACCGGAGC
TGTTGGCCCTGGTGCGACTGCCCCTACTGCAGCCAGCGTTTATCATGGAC
CACGTGGAGAACGTTTGCAATGCCAACGAGTGCCAGCAGCTGGTTATGGA
GGCATTCAAGTGGCACCTGATGCCCGAGCGCCGATCCCGGATAGCCACCG
AGCGAACAACGCCGCGCAAATCCACGGTGGGTCGTCTCCTGGCCGTCGGC
GGCATGGATGCCCACAAGGGCGCCATCAGCATCGAGAGCTACTGCCCGCG
TTTGGACAAGTGGACACCGTGGAAGCACATGACCGGTCGTCGACTGCAAT
TCGGCGCTGCTGTCATGGAGGATAAACTGATCCTAGTGGGCGGACGTGAT
GGGCTAAAGACCCTGAACACCGTAGAGAGTTTGGACCTGAATACAATGGC
CTGGGCACCGCTCAATGCCATGGCCACACCCCGTCATGGACTGGGCGTGG
CGGTGCTGGAGGGTCCACTCTATGCGGTGGGCGGTCACGACGGCTGGAGC
TACCTGAACACCGTGGAGAGATGGGATCCCATAGCGCGCACTTGGAGCTA
TGTGGCACCCATGTCCTCGATGCGTTCCACCGCCGGCGTGGCTGTCCTGG
GCGGTCGCCTGTATGCGGTGGGCGGACGTGATGGTTCCGTCTGTCATCGC
TCCATCGAGTGCTACGATCCGCACACGAACAAATGGAGCCTACTGGCGCC
GATGAACAGGAGACGCGGCGGCGTTGGCGTGACGGTGGCCAATGGTTTCC
TGTACGCCTTGGGTGGCCACGACTGTCCGGCCAGCAATCCAATGGTCTGC
CGCACGGAGACGGTGGAGCGCTACGACCCAGCCACCGATACCTGGACTCT
GATCTGCTCACTGGCTTTGGGCCGGGACGCGATCGGCTGTGCCCTGCTGG
GCGATCGCCTGATCGTCGTCGGCGGCTACGATGGCAATCATGCGCTGAAG
AGCGTCGAGGAGTACGACCCGGTGCGCAATGGATGGAACGAGCTGGCGCC
CATGGCTTTCGCAAGGGCCGGCGCCTGTGTGGTGGCGATTCCGAATGTCA
TACCGCCGGCGGCTCAACAGCCGCCGCCCAGTGCTACAAAAAAGAAGAAG
TGGAAGCCAGTGAGATTGGATCCAATCTGCTATAATAGGCGTCCCAGATG
TGTCGAGTTTGTCGACTACTATAACATGTAAAAGCTTTCTAGACCAT
BS09166.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:33:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17754-RA | 1965 | CG17754-PA | 1..1965 | 17..1981 | 9825 | 100 | Plus |
CG17754-RC | 1965 | CG17754-PC | 1..1965 | 17..1981 | 9825 | 100 | Plus |
CG17754-RG | 1956 | CG17754-PG | 1..1956 | 17..1981 | 9655 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17754-RA | 2397 | CG17754-RA | 350..2320 | 16..1986 | 9840 | 99.9 | Plus |
CG17754-RC | 2333 | CG17754-RC | 286..2256 | 16..1986 | 9840 | 99.9 | Plus |
CG17754-RG | 2539 | CG17754-RG | 350..2311 | 16..1986 | 9670 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9252526..9253571 | 275..1320 | 5230 | 100 | Plus |
X | 23542271 | X | 9250769..9251030 | 16..277 | 1310 | 100 | Plus |
X | 23542271 | X | 9254112..9254349 | 1651..1888 | 1190 | 100 | Plus |
X | 23542271 | X | 9253649..9253862 | 1319..1532 | 1070 | 100 | Plus |
X | 23542271 | X | 9253917..9254039 | 1529..1651 | 615 | 100 | Plus |
X | 23542271 | X | 9255628..9255725 | 1889..1986 | 475 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:33:40 has no hits.
BS09166.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:08 Download gff for
BS09166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17754-RA | 327..2289 | 17..1979 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:05 Download gff for
BS09166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17754-RC | 287..2249 | 17..1979 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:26 Download gff for
BS09166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17754-RC | 287..2249 | 17..1979 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:26 Download gff for
BS09166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9250770..9251029 | 17..276 | 100 | -> | Plus |
X | 9252528..9253571 | 277..1320 | 100 | -> | Plus |
X | 9253651..9253858 | 1321..1528 | 100 | -> | Plus |
X | 9253917..9254039 | 1529..1651 | 100 | -> | Plus |
X | 9254113..9254349 | 1652..1888 | 100 | -> | Plus |
X | 9255628..9255718 | 1889..1979 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:05 Download gff for
BS09166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9144803..9145062 | 17..276 | 100 | -> | Plus |
arm_X | 9146561..9147604 | 277..1320 | 100 | -> | Plus |
arm_X | 9147684..9147891 | 1321..1528 | 100 | -> | Plus |
arm_X | 9147950..9148072 | 1529..1651 | 100 | -> | Plus |
arm_X | 9148146..9148382 | 1652..1888 | 100 | -> | Plus |
arm_X | 9149661..9149751 | 1889..1979 | 100 | | Plus |
BS09166.pep Sequence
Translation from 16 to 1980
> BS09166.pep
MSAVNQKESPSRDSTASTSGHISMLADNTLESLSRDYSLGSLNSAGSQDE
FFRCRDHADNILKRMQLYVDSQQLCDVVLIAGIDGKRVPAHRLVLSASSA
YFSAMFTGSLRETKEQEVTLGEVHGDALHLLVQYCYTGFIEMREDTVETL
LATACLLQLNAVVTACCNFLARQLHPSNCLGFAFFAEQQSCTTLLRLAQA
YTCQYFMQVCQNQEFFQLNADQLGKLLSSDDLNVPSEQDVFHSLMSWVRH
DSAAREQHIPELLALVRLPLLQPAFIMDHVENVCNANECQQLVMEAFKWH
LMPERRSRIATERTTPRKSTVGRLLAVGGMDAHKGAISIESYCPRLDKWT
PWKHMTGRRLQFGAAVMEDKLILVGGRDGLKTLNTVESLDLNTMAWAPLN
AMATPRHGLGVAVLEGPLYAVGGHDGWSYLNTVERWDPIARTWSYVAPMS
SMRSTAGVAVLGGRLYAVGGRDGSVCHRSIECYDPHTNKWSLLAPMNRRR
GGVGVTVANGFLYALGGHDCPASNPMVCRTETVERYDPATDTWTLICSLA
LGRDAIGCALLGDRLIVVGGYDGNHALKSVEEYDPVRNGWNELAPMAFAR
AGACVVAIPNVIPPAAQQPPPSATKKKKWKPVRLDPICYNRRPRCVEFVD
YYNM*
BS09166.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:54:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17754-PA | 654 | CG17754-PA | 1..654 | 1..654 | 3473 | 100 | Plus |
CG17754-PC | 654 | CG17754-PC | 1..654 | 1..654 | 3473 | 100 | Plus |
CG17754-PG | 651 | CG17754-PG | 1..651 | 1..654 | 3444 | 99.5 | Plus |
CG17754-PF | 625 | CG17754-PF | 1..624 | 1..624 | 3297 | 100 | Plus |
CG17754-PD | 625 | CG17754-PD | 1..624 | 1..624 | 3297 | 100 | Plus |