Clone BS09170 Report

Search the DGRC for BS09170

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:91
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG5326-RA
Protein status:BS09170.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09170.3prime Sequence

864 bp (863 high quality bases) assembled on 2006-01-24

> BS09170.3prime
ATGGTCTAGAAAGCTTCTACTCCTTTTTCGCCGCCAGCTTGGCCTGGGCA
GCCGCCTCCTTCTTGTAGTTGGCCACATAGAAGGCGCTGAACATATAGGT
GAAGAGTCCAGCATTGAAGGTCAGGAGTGCGGCAATGGACTTGGGGAAGT
TGCAGTTGGGCTGGAACTGGATTTGCAGTGTGTGCACGAAGATGATCAGG
AATTGGACAATCTGCAGGATGGTGATGTACTTCTTCCACCACAGATACTT
TTGCACCTTGGGTCCCATCGCGGAGAGCAGGTAGTAGGCGTACATAATGA
TGTGGATGAAGGAGTTAATGAATCCCAGAAGGGTTCCATGGCCACCGGCA
AAGTACTTGACCCCAATGAAGGCACACACGGGCATCAGAGTGTGGTGGTA
CAAGTGGAGGAAGGAGATCTGGCGCTGTTTCTTGCGCAGCACAAAGAACA
CGGTGTCCAACAGCTCCGTGATCTTGGCAATGTAGTACAGCCACACGGCA
CGAGCCATCCTCATGGAAATCGGATCCGATTCGTAAGTCACCGGCTGGCA
CTTGAAGTTGTAGTGGCCACCCCAGCCGCCCTTGTATCCCTCGTAGAAGA
GCACCCAGCTGAGGAGCACTTGGACCGCATTGTAGACCAGGAGAGTGTTC
TTCAGCTCGAAGGGCTTGCGATCGCGCATGTAACGAGGTCCTGCGTACAG
GCAGAAGTACAGGTAGGCTCCAAGGATCATGAACAGCGGTCCGGGGGCAT
TCGAAAGGAACCATTGCTTGGTGCGCAGATCCTCGTGCTCCACGAAGAAG
TTGACCATCCGGTCAACAATGGTCGTCGTCTCGTTCAGTCTGACCGACAT
GTCGACTGATAACT

BS09170.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5326-PA 834 CG5326-RA 1..834 850..17 4170 100 Minus
CG5326-PB 372 CG5326-RB 1..342 850..509 1710 100 Minus
CG2781-PA 990 CG2781-RA 544..612 295..227 195 91.3 Minus
CG5278-PA 888 CG5278-RA 586..626 250..210 180 97.5 Minus
CG16904-PA 789 CG16904-RA 350..404 459..405 150 90.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5326-RA 1694 CG5326-RA 320..1153 850..17 4170 100 Minus
CG5278-RA 1722 CG5278-RA 526..804 478..200 420 77.6 Minus
CG2781-RA 1974 CG2781-RA 921..1042 348..227 290 83.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:32:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22532967..22533269 207..509 1515 100 Plus
3R 32079331 3R 22533336..22533595 509..768 1300 100 Plus
3R 32079331 3R 22532715..22532906 17..208 960 100 Plus
3R 32079331 3R 22533684..22533767 767..850 420 100 Plus
3R 32079331 3R 22559611..22559879 210..478 415 77 Plus
3R 32079331 3R 7982865..7982954 227..316 285 87.8 Plus
3R 32079331 3R 9813349..9813433 476..392 215 83.5 Minus
3R 32079331 3R 9816469..9816540 392..463 210 86.1 Plus
3R 32079331 3R 4444113..4444219 210..316 205 79.4 Plus
3R 32079331 3R 22555689..22555773 304..220 185 81.2 Minus
Blast to na_te.dros performed 2015-02-03 08:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\worf 4174 Dmir\worf WORF 4174bp Derived from AY144572. 814..889 207..131 121 65.4 Minus

BS09170.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:01:29 Download gff for BS09170.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5326-PA 1..834 17..850 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:08:42 Download gff for BS09170.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5326-PA 1..834 17..850 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:39:40 Download gff for BS09170.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5326-RA 312..1158 13..858 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:54:09 Download gff for BS09170.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5326-RA 312..1158 13..858 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:54:09 Download gff for BS09170.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22532710..22532906 13..208 99 <- Plus
3R 22532969..22533268 209..508 100 <- Plus
3R 22533336..22533593 509..766 100 <- Plus
3R 22533684..22533775 767..858 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:39:40 Download gff for BS09170.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18358432..18358628 13..208 99 <- Plus
arm_3R 18358691..18358990 209..508 100 <- Plus
arm_3R 18359058..18359315 509..766 100 <- Plus
arm_3R 18359406..18359497 767..858 96   Plus

BS09170.5prime Sequence

864 bp (836 high quality bases) assembled on 2006-01-24

> BS09170.5prime
GAAGTTATCAGTCGACATGTCGGTCAGACTGAACGAGACGACGACCATTG
TTGACCGGATGGTCAACTTCTTCGTGGAGCACGAGGATCTGCGCACCAAG
CAATGGTTCCTTTCGAATGCCCCCGGACCGCTGTTCATGATCCTTGGAGC
CTACCTGTACTTCTGCCTGTACGCAGGACCTCGTTACATGCGCGATCGCA
AGCCCTTCGAGCTGAAGAACACTCTCCTGGTCTACAATGCGGTCCAAGTG
CTCCTCAGCTGGGTGCTCTTCTACGAGGGATACAAGGGCGGCTGGGGTGG
CCACTACAACTTCAAGTGCCAGCCGGTGACTTACGAATCGGATCCGATTT
CCATGAGGATGGCTCGTGCCGTGTGGCTGTACTACATTGCCAAGATCACG
GAGCTGTTGGACACCGTGTTCTTTGTGCTGCGCAAGAAACAGCGCCAGAT
CTCCTTCCTCCACTTGTACCACCACACTCTGATGCCCGTGTGTGCCTTCA
TTGGGGTCAAGTACTTTGCCGGTGGCCATGGAACCCTTCTGGGATTCATT
AACTCCTTCATCCACATCATTATGTACGCCTACTACCTGCTCTCCGCGAT
GGGACCCAAGGTGCAAAAGTATCTGTGGTGGAAGAAGTACATCACCATCC
TGCAGATTGTCCAATTCCTGATCATCTTCGTGCACACACTGCANATCCAG
TTCCAGCCCAACTGCAACTTCCCCAAGTCCATTGCCGCACTCCTGACCTT
CAATGCTGGACTCTTCACCTATATGTTCAGCGCCTTCTATGTGGCCAACT
ACAAGAAGGAGGCGGCTGCCCAGGCCAAGCTGGCGGCGAANAAGGAGTAG
AAGCTTTCTAGACC

BS09170.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:21:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5326-PA 834 CG5326-RA 1..834 17..850 4132 99.7 Plus
CG5326-PB 372 CG5326-RB 1..342 17..358 1710 100 Plus
CG2781-PA 990 CG2781-RA 544..612 572..640 195 91.3 Plus
CG5278-PA 888 CG5278-RA 586..626 617..657 180 97.5 Plus
CG16904-PA 789 CG16904-RA 350..404 408..462 150 90.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5326-RA 1694 CG5326-RA 320..1153 17..850 4148 99.8 Plus
CG5278-RA 1722 CG5278-RA 526..804 389..667 420 77.6 Plus
CG2781-RA 1974 CG2781-RA 921..1042 519..640 290 83.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22532967..22533269 660..358 1515 100 Minus
3R 32079331 3R 22533336..22533595 358..99 1300 100 Minus
3R 32079331 3R 22532715..22532906 850..659 938 99 Minus
3R 32079331 3R 22533684..22533767 100..17 420 100 Minus
3R 32079331 3R 22559611..22559879 657..389 415 77 Minus
3R 32079331 3R 7982865..7982954 640..551 285 87.8 Minus
3R 32079331 3R 9813349..9813433 391..475 215 83.5 Plus
3R 32079331 3R 9816469..9816540 475..404 210 86.1 Minus
3R 32079331 3R 4444113..4444219 657..551 205 79.4 Minus
3R 32079331 3R 22555689..22555773 563..647 185 81.2 Plus
Blast to na_te.dros performed on 2015-02-04 03:49:14 has no hits.

BS09170.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:01:30 Download gff for BS09170.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5326-PA 1..834 17..850 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:08:43 Download gff for BS09170.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5326-PA 1..834 17..850 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:56:58 Download gff for BS09170.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5326-RA 312..1158 9..854 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:32:05 Download gff for BS09170.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5326-RA 312..1158 9..854 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:32:05 Download gff for BS09170.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22532710..22532906 659..854 98 <- Minus
3R 22532969..22533268 359..658 100 <- Minus
3R 22533336..22533593 101..358 100 <- Minus
3R 22533684..22533775 9..100 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:56:58 Download gff for BS09170.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18358432..18358628 659..854 98 <- Minus
arm_3R 18358691..18358990 359..658 100 <- Minus
arm_3R 18359058..18359315 101..358 100 <- Minus
arm_3R 18359406..18359497 9..100 96   Minus

BS09170.complete Sequence

866 bp (866 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636366

> BS09170.complete
GAAGTTATCAGTCGACATGTCGGTCAGACTGAACGAGACGACGACCATTG
TTGACCGGATGGTCAACTTCTTCGTGGAGCACGAGGATCTGCGCACCAAG
CAATGGTTCCTTTCGAATGCCCCCGGACCGCTGTTCATGATCCTTGGAGC
CTACCTGTACTTCTGCCTGTACGCAGGACCTCGTTACATGCGCGATCGCA
AGCCCTTCGAGCTGAAGAACACTCTCCTGGTCTACAATGCGGTCCAAGTG
CTCCTCAGCTGGGTGCTCTTCTACGAGGGATACAAGGGCGGCTGGGGTGG
CCACTACAACTTCAAGTGCCAGCCGGTGACTTACGAATCGGATCCGATTT
CCATGAGGATGGCTCGTGCCGTGTGGCTGTACTACATTGCCAAGATCACG
GAGCTGTTGGACACCGTGTTCTTTGTGCTGCGCAAGAAACAGCGCCAGAT
CTCCTTCCTCCACTTGTACCACCACACTCTGATGCCCGTGTGTGCCTTCA
TTGGGGTCAAGTACTTTGCCGGTGGCCATGGAACCCTTCTGGGATTCATT
AACTCCTTCATCCACATCATTATGTACGCCTACTACCTGCTCTCCGCGAT
GGGACCCAAGGTGCAAAAGTATCTGTGGTGGAAGAAGTACATCACCATCC
TGCAGATTGTCCAATTCCTGATCATCTTCGTGCACACACTGCAAATCCAG
TTCCAGCCCAACTGCAACTTCCCCAAGTCCATTGCCGCACTCCTGACCTT
CAATGCTGGACTCTTCACCTATATGTTCAGCGCCTTCTATGTGGCCAACT
ACAAGAAGGAGGCGGCTGCCCAGGCCAAGCTGGCGGCGAAAAAGGAGTAG
AAGCTTTCTAGACCAT

BS09170.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5326-RA 834 CG5326-PA 1..834 17..850 4170 100 Plus
CG5278-RA 888 CG5278-PA 358..636 389..667 420 76.7 Plus
CG2781-RA 990 CG2781-PA 523..612 551..640 285 87.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5326-RA 1694 CG5326-RA 320..1153 17..850 4170 100 Plus
CG5278-RA 1722 CG5278-RA 526..804 389..667 420 76.7 Plus
CG2781-RA 1974 CG2781-RA 953..1042 551..640 285 87.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:37:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22532967..22533269 660..358 1515 100 Minus
3R 32079331 3R 22533336..22533595 358..99 1300 100 Minus
3R 32079331 3R 22532715..22532906 850..659 960 100 Minus
3R 32079331 3R 22533684..22533767 100..17 420 100 Minus
3R 32079331 3R 22559611..22559879 657..389 415 77 Minus
3R 32079331 3R 7982865..7982954 640..551 285 87.8 Minus
3R 32079331 3R 9813349..9813433 391..475 215 83.5 Plus
3R 32079331 3R 9816469..9816540 475..404 210 86.1 Minus
3R 32079331 3R 4444113..4444219 657..551 205 79.4 Minus
3R 32079331 3R 22555689..22555773 563..647 185 81.2 Plus
Blast to na_te.dros performed 2014-11-27 01:37:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\worf 4174 Dmir\worf WORF 4174bp Derived from AY144572. 814..889 660..736 121 65.4 Plus

BS09170.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:55 Download gff for BS09170.complete
Subject Subject Range Query Range Percent Splice Strand
CG5326-RA 1..834 17..850 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:28 Download gff for BS09170.complete
Subject Subject Range Query Range Percent Splice Strand
CG5326-RA 314..1160 9..854 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:27 Download gff for BS09170.complete
Subject Subject Range Query Range Percent Splice Strand
CG5326-RA 320..1153 17..850 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:55 Download gff for BS09170.complete
Subject Subject Range Query Range Percent Splice Strand
CG5326-RA 314..1160 9..854 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:29:13 Download gff for BS09170.complete
Subject Subject Range Query Range Percent Splice Strand
CG5326-RA 320..1153 17..850 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:29:13 Download gff for BS09170.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22532715..22532906 659..850 100 <- Minus
3R 22532969..22533268 359..658 100 <- Minus
3R 22533336..22533593 101..358 100 <- Minus
3R 22533684..22533767 17..100 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:27 Download gff for BS09170.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18359058..18359315 101..358 100 <- Minus
arm_3R 18359406..18359489 17..100 100   Minus
arm_3R 18358437..18358628 659..850 100 <- Minus
arm_3R 18358691..18358990 359..658 100 <- Minus

BS09170.pep Sequence

Translation from 16 to 849

> BS09170.pep
MSVRLNETTTIVDRMVNFFVEHEDLRTKQWFLSNAPGPLFMILGAYLYFC
LYAGPRYMRDRKPFELKNTLLVYNAVQVLLSWVLFYEGYKGGWGGHYNFK
CQPVTYESDPISMRMARAVWLYYIAKITELLDTVFFVLRKKQRQISFLHL
YHHTLMPVCAFIGVKYFAGGHGTLLGFINSFIHIIMYAYYLLSAMGPKVQ
KYLWWKKYITILQIVQFLIIFVHTLQIQFQPNCNFPKSIAALLTFNAGLF
TYMFSAFYVANYKKEAAAQAKLAAKKE*

BS09170.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:43:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG5326-PA 277 CG5326-PA 1..277 1..277 1477 100 Plus
CG31522-PH 364 CG31522-PH 8..258 12..263 702 48.4 Plus
CG31522-PG 364 CG31522-PG 8..258 12..263 702 48.4 Plus
CG31522-PA 364 CG31522-PA 8..258 12..263 702 48.4 Plus
CG5278-PA 295 CG5278-PA 7..267 10..273 701 51.5 Plus