Clone Sequence Records
BS09170.3prime Sequence
864 bp (863 high quality bases) assembled on 2006-01-24
> BS09170.3prime
ATGGTCTAGAAAGCTTCTACTCCTTTTTCGCCGCCAGCTTGGCCTGGGCA
GCCGCCTCCTTCTTGTAGTTGGCCACATAGAAGGCGCTGAACATATAGGT
GAAGAGTCCAGCATTGAAGGTCAGGAGTGCGGCAATGGACTTGGGGAAGT
TGCAGTTGGGCTGGAACTGGATTTGCAGTGTGTGCACGAAGATGATCAGG
AATTGGACAATCTGCAGGATGGTGATGTACTTCTTCCACCACAGATACTT
TTGCACCTTGGGTCCCATCGCGGAGAGCAGGTAGTAGGCGTACATAATGA
TGTGGATGAAGGAGTTAATGAATCCCAGAAGGGTTCCATGGCCACCGGCA
AAGTACTTGACCCCAATGAAGGCACACACGGGCATCAGAGTGTGGTGGTA
CAAGTGGAGGAAGGAGATCTGGCGCTGTTTCTTGCGCAGCACAAAGAACA
CGGTGTCCAACAGCTCCGTGATCTTGGCAATGTAGTACAGCCACACGGCA
CGAGCCATCCTCATGGAAATCGGATCCGATTCGTAAGTCACCGGCTGGCA
CTTGAAGTTGTAGTGGCCACCCCAGCCGCCCTTGTATCCCTCGTAGAAGA
GCACCCAGCTGAGGAGCACTTGGACCGCATTGTAGACCAGGAGAGTGTTC
TTCAGCTCGAAGGGCTTGCGATCGCGCATGTAACGAGGTCCTGCGTACAG
GCAGAAGTACAGGTAGGCTCCAAGGATCATGAACAGCGGTCCGGGGGCAT
TCGAAAGGAACCATTGCTTGGTGCGCAGATCCTCGTGCTCCACGAAGAAG
TTGACCATCCGGTCAACAATGGTCGTCGTCTCGTTCAGTCTGACCGACAT
GTCGACTGATAACT
BS09170.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:21:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5326-PA | 834 | CG5326-RA | 1..834 | 850..17 | 4170 | 100 | Minus |
CG5326-PB | 372 | CG5326-RB | 1..342 | 850..509 | 1710 | 100 | Minus |
CG2781-PA | 990 | CG2781-RA | 544..612 | 295..227 | 195 | 91.3 | Minus |
CG5278-PA | 888 | CG5278-RA | 586..626 | 250..210 | 180 | 97.5 | Minus |
CG16904-PA | 789 | CG16904-RA | 350..404 | 459..405 | 150 | 90.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:32:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5326-RA | 1694 | CG5326-RA | 320..1153 | 850..17 | 4170 | 100 | Minus |
CG5278-RA | 1722 | CG5278-RA | 526..804 | 478..200 | 420 | 77.6 | Minus |
CG2781-RA | 1974 | CG2781-RA | 921..1042 | 348..227 | 290 | 83.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:32:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22532967..22533269 | 207..509 | 1515 | 100 | Plus |
3R | 32079331 | 3R | 22533336..22533595 | 509..768 | 1300 | 100 | Plus |
3R | 32079331 | 3R | 22532715..22532906 | 17..208 | 960 | 100 | Plus |
3R | 32079331 | 3R | 22533684..22533767 | 767..850 | 420 | 100 | Plus |
3R | 32079331 | 3R | 22559611..22559879 | 210..478 | 415 | 77 | Plus |
3R | 32079331 | 3R | 7982865..7982954 | 227..316 | 285 | 87.8 | Plus |
3R | 32079331 | 3R | 9813349..9813433 | 476..392 | 215 | 83.5 | Minus |
3R | 32079331 | 3R | 9816469..9816540 | 392..463 | 210 | 86.1 | Plus |
3R | 32079331 | 3R | 4444113..4444219 | 210..316 | 205 | 79.4 | Plus |
3R | 32079331 | 3R | 22555689..22555773 | 304..220 | 185 | 81.2 | Minus |
Blast to na_te.dros performed 2015-02-03 08:32:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\worf | 4174 | Dmir\worf WORF 4174bp Derived from AY144572. | 814..889 | 207..131 | 121 | 65.4 | Minus |
BS09170.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:01:29 Download gff for
BS09170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5326-PA | 1..834 | 17..850 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:08:42 Download gff for
BS09170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5326-PA | 1..834 | 17..850 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:39:40 Download gff for
BS09170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5326-RA | 312..1158 | 13..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:54:09 Download gff for
BS09170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5326-RA | 312..1158 | 13..858 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:54:09 Download gff for
BS09170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22532710..22532906 | 13..208 | 99 | <- | Plus |
3R | 22532969..22533268 | 209..508 | 100 | <- | Plus |
3R | 22533336..22533593 | 509..766 | 100 | <- | Plus |
3R | 22533684..22533775 | 767..858 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:39:40 Download gff for
BS09170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18358432..18358628 | 13..208 | 99 | <- | Plus |
arm_3R | 18358691..18358990 | 209..508 | 100 | <- | Plus |
arm_3R | 18359058..18359315 | 509..766 | 100 | <- | Plus |
arm_3R | 18359406..18359497 | 767..858 | 96 | | Plus |
BS09170.5prime Sequence
864 bp (836 high quality bases) assembled on 2006-01-24
> BS09170.5prime
GAAGTTATCAGTCGACATGTCGGTCAGACTGAACGAGACGACGACCATTG
TTGACCGGATGGTCAACTTCTTCGTGGAGCACGAGGATCTGCGCACCAAG
CAATGGTTCCTTTCGAATGCCCCCGGACCGCTGTTCATGATCCTTGGAGC
CTACCTGTACTTCTGCCTGTACGCAGGACCTCGTTACATGCGCGATCGCA
AGCCCTTCGAGCTGAAGAACACTCTCCTGGTCTACAATGCGGTCCAAGTG
CTCCTCAGCTGGGTGCTCTTCTACGAGGGATACAAGGGCGGCTGGGGTGG
CCACTACAACTTCAAGTGCCAGCCGGTGACTTACGAATCGGATCCGATTT
CCATGAGGATGGCTCGTGCCGTGTGGCTGTACTACATTGCCAAGATCACG
GAGCTGTTGGACACCGTGTTCTTTGTGCTGCGCAAGAAACAGCGCCAGAT
CTCCTTCCTCCACTTGTACCACCACACTCTGATGCCCGTGTGTGCCTTCA
TTGGGGTCAAGTACTTTGCCGGTGGCCATGGAACCCTTCTGGGATTCATT
AACTCCTTCATCCACATCATTATGTACGCCTACTACCTGCTCTCCGCGAT
GGGACCCAAGGTGCAAAAGTATCTGTGGTGGAAGAAGTACATCACCATCC
TGCAGATTGTCCAATTCCTGATCATCTTCGTGCACACACTGCANATCCAG
TTCCAGCCCAACTGCAACTTCCCCAAGTCCATTGCCGCACTCCTGACCTT
CAATGCTGGACTCTTCACCTATATGTTCAGCGCCTTCTATGTGGCCAACT
ACAAGAAGGAGGCGGCTGCCCAGGCCAAGCTGGCGGCGAANAAGGAGTAG
AAGCTTTCTAGACC
BS09170.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:21:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5326-PA | 834 | CG5326-RA | 1..834 | 17..850 | 4132 | 99.7 | Plus |
CG5326-PB | 372 | CG5326-RB | 1..342 | 17..358 | 1710 | 100 | Plus |
CG2781-PA | 990 | CG2781-RA | 544..612 | 572..640 | 195 | 91.3 | Plus |
CG5278-PA | 888 | CG5278-RA | 586..626 | 617..657 | 180 | 97.5 | Plus |
CG16904-PA | 789 | CG16904-RA | 350..404 | 408..462 | 150 | 90.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:49:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5326-RA | 1694 | CG5326-RA | 320..1153 | 17..850 | 4148 | 99.8 | Plus |
CG5278-RA | 1722 | CG5278-RA | 526..804 | 389..667 | 420 | 77.6 | Plus |
CG2781-RA | 1974 | CG2781-RA | 921..1042 | 519..640 | 290 | 83.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:49:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22532967..22533269 | 660..358 | 1515 | 100 | Minus |
3R | 32079331 | 3R | 22533336..22533595 | 358..99 | 1300 | 100 | Minus |
3R | 32079331 | 3R | 22532715..22532906 | 850..659 | 938 | 99 | Minus |
3R | 32079331 | 3R | 22533684..22533767 | 100..17 | 420 | 100 | Minus |
3R | 32079331 | 3R | 22559611..22559879 | 657..389 | 415 | 77 | Minus |
3R | 32079331 | 3R | 7982865..7982954 | 640..551 | 285 | 87.8 | Minus |
3R | 32079331 | 3R | 9813349..9813433 | 391..475 | 215 | 83.5 | Plus |
3R | 32079331 | 3R | 9816469..9816540 | 475..404 | 210 | 86.1 | Minus |
3R | 32079331 | 3R | 4444113..4444219 | 657..551 | 205 | 79.4 | Minus |
3R | 32079331 | 3R | 22555689..22555773 | 563..647 | 185 | 81.2 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:49:14 has no hits.
BS09170.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:01:30 Download gff for
BS09170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5326-PA | 1..834 | 17..850 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:08:43 Download gff for
BS09170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5326-PA | 1..834 | 17..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:56:58 Download gff for
BS09170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5326-RA | 312..1158 | 9..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:32:05 Download gff for
BS09170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5326-RA | 312..1158 | 9..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:32:05 Download gff for
BS09170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22532710..22532906 | 659..854 | 98 | <- | Minus |
3R | 22532969..22533268 | 359..658 | 100 | <- | Minus |
3R | 22533336..22533593 | 101..358 | 100 | <- | Minus |
3R | 22533684..22533775 | 9..100 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:56:58 Download gff for
BS09170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18358432..18358628 | 659..854 | 98 | <- | Minus |
arm_3R | 18358691..18358990 | 359..658 | 100 | <- | Minus |
arm_3R | 18359058..18359315 | 101..358 | 100 | <- | Minus |
arm_3R | 18359406..18359497 | 9..100 | 96 | | Minus |
BS09170.complete Sequence
866 bp (866 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636366
> BS09170.complete
GAAGTTATCAGTCGACATGTCGGTCAGACTGAACGAGACGACGACCATTG
TTGACCGGATGGTCAACTTCTTCGTGGAGCACGAGGATCTGCGCACCAAG
CAATGGTTCCTTTCGAATGCCCCCGGACCGCTGTTCATGATCCTTGGAGC
CTACCTGTACTTCTGCCTGTACGCAGGACCTCGTTACATGCGCGATCGCA
AGCCCTTCGAGCTGAAGAACACTCTCCTGGTCTACAATGCGGTCCAAGTG
CTCCTCAGCTGGGTGCTCTTCTACGAGGGATACAAGGGCGGCTGGGGTGG
CCACTACAACTTCAAGTGCCAGCCGGTGACTTACGAATCGGATCCGATTT
CCATGAGGATGGCTCGTGCCGTGTGGCTGTACTACATTGCCAAGATCACG
GAGCTGTTGGACACCGTGTTCTTTGTGCTGCGCAAGAAACAGCGCCAGAT
CTCCTTCCTCCACTTGTACCACCACACTCTGATGCCCGTGTGTGCCTTCA
TTGGGGTCAAGTACTTTGCCGGTGGCCATGGAACCCTTCTGGGATTCATT
AACTCCTTCATCCACATCATTATGTACGCCTACTACCTGCTCTCCGCGAT
GGGACCCAAGGTGCAAAAGTATCTGTGGTGGAAGAAGTACATCACCATCC
TGCAGATTGTCCAATTCCTGATCATCTTCGTGCACACACTGCAAATCCAG
TTCCAGCCCAACTGCAACTTCCCCAAGTCCATTGCCGCACTCCTGACCTT
CAATGCTGGACTCTTCACCTATATGTTCAGCGCCTTCTATGTGGCCAACT
ACAAGAAGGAGGCGGCTGCCCAGGCCAAGCTGGCGGCGAAAAAGGAGTAG
AAGCTTTCTAGACCAT
BS09170.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:37:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5326-RA | 834 | CG5326-PA | 1..834 | 17..850 | 4170 | 100 | Plus |
CG5278-RA | 888 | CG5278-PA | 358..636 | 389..667 | 420 | 76.7 | Plus |
CG2781-RA | 990 | CG2781-PA | 523..612 | 551..640 | 285 | 87.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:37:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5326-RA | 1694 | CG5326-RA | 320..1153 | 17..850 | 4170 | 100 | Plus |
CG5278-RA | 1722 | CG5278-RA | 526..804 | 389..667 | 420 | 76.7 | Plus |
CG2781-RA | 1974 | CG2781-RA | 953..1042 | 551..640 | 285 | 87.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:37:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22532967..22533269 | 660..358 | 1515 | 100 | Minus |
3R | 32079331 | 3R | 22533336..22533595 | 358..99 | 1300 | 100 | Minus |
3R | 32079331 | 3R | 22532715..22532906 | 850..659 | 960 | 100 | Minus |
3R | 32079331 | 3R | 22533684..22533767 | 100..17 | 420 | 100 | Minus |
3R | 32079331 | 3R | 22559611..22559879 | 657..389 | 415 | 77 | Minus |
3R | 32079331 | 3R | 7982865..7982954 | 640..551 | 285 | 87.8 | Minus |
3R | 32079331 | 3R | 9813349..9813433 | 391..475 | 215 | 83.5 | Plus |
3R | 32079331 | 3R | 9816469..9816540 | 475..404 | 210 | 86.1 | Minus |
3R | 32079331 | 3R | 4444113..4444219 | 657..551 | 205 | 79.4 | Minus |
3R | 32079331 | 3R | 22555689..22555773 | 563..647 | 185 | 81.2 | Plus |
Blast to na_te.dros performed 2014-11-27 01:37:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\worf | 4174 | Dmir\worf WORF 4174bp Derived from AY144572. | 814..889 | 660..736 | 121 | 65.4 | Plus |
BS09170.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:55 Download gff for
BS09170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5326-RA | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:28 Download gff for
BS09170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5326-RA | 314..1160 | 9..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:27 Download gff for
BS09170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5326-RA | 320..1153 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:55 Download gff for
BS09170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5326-RA | 314..1160 | 9..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:29:13 Download gff for
BS09170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5326-RA | 320..1153 | 17..850 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:29:13 Download gff for
BS09170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22532715..22532906 | 659..850 | 100 | <- | Minus |
3R | 22532969..22533268 | 359..658 | 100 | <- | Minus |
3R | 22533336..22533593 | 101..358 | 100 | <- | Minus |
3R | 22533684..22533767 | 17..100 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:27 Download gff for
BS09170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18359058..18359315 | 101..358 | 100 | <- | Minus |
arm_3R | 18359406..18359489 | 17..100 | 100 | | Minus |
arm_3R | 18358437..18358628 | 659..850 | 100 | <- | Minus |
arm_3R | 18358691..18358990 | 359..658 | 100 | <- | Minus |
BS09170.pep Sequence
Translation from 16 to 849
> BS09170.pep
MSVRLNETTTIVDRMVNFFVEHEDLRTKQWFLSNAPGPLFMILGAYLYFC
LYAGPRYMRDRKPFELKNTLLVYNAVQVLLSWVLFYEGYKGGWGGHYNFK
CQPVTYESDPISMRMARAVWLYYIAKITELLDTVFFVLRKKQRQISFLHL
YHHTLMPVCAFIGVKYFAGGHGTLLGFINSFIHIIMYAYYLLSAMGPKVQ
KYLWWKKYITILQIVQFLIIFVHTLQIQFQPNCNFPKSIAALLTFNAGLF
TYMFSAFYVANYKKEAAAQAKLAAKKE*
BS09170.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:43:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5326-PA | 277 | CG5326-PA | 1..277 | 1..277 | 1477 | 100 | Plus |
CG31522-PH | 364 | CG31522-PH | 8..258 | 12..263 | 702 | 48.4 | Plus |
CG31522-PG | 364 | CG31522-PG | 8..258 | 12..263 | 702 | 48.4 | Plus |
CG31522-PA | 364 | CG31522-PA | 8..258 | 12..263 | 702 | 48.4 | Plus |
CG5278-PA | 295 | CG5278-PA | 7..267 | 10..273 | 701 | 51.5 | Plus |