Clone Sequence Records
BS09173.3prime Sequence
907 bp (777 high quality bases) assembled on 2006-01-24
> BS09173.3prime
ATGGTCTAGAAAGCTTCTACACTGACGTGTAAAAGTGTTCTCGCTTGCGG
TGGCAACAAATAAATAACGTTATGTATAAGAATGTTGCAACAATGCCCAA
AGTGTTGAGCGCCATGGAGAAGGCGAGCAGATACTTCCATTCGATCCGAA
GCTCGGCACAACCATCGTTTTGTGACGCCTCCTCCTGACCAACTGCAAAT
GCCATTGGAGCCTCGGAGGAGTAGTTGGCCACCACCTCACCTGCCGCCAA
GCAGGTGCAATTGTGATAGCTAAGCAATGAGCTCGATGTTGGTCCACATT
CTCCGTCTGCGGATGAGATGAGCTCCGCGAACTCAATTGCCGCACAGACG
AGGGCCAAGCAGCAGAAGATCAACGCCAGGCCAGTGAACACATACGACTC
GGCCAGCAGGACCTTGTAGCAACTATTGGTCTGCGGTCTGTGCTCCGTGA
TCTTGTGATCCCTTCGCAGCAGTATGAGCCCCGCAATGCTGGCCAATAGC
AGCGACAATCCACTCAGATACGGATTGATCAATATGGACGCATTGGGGGC
TAGGATTAGTATCCAAACGGCAAGACCCACGATGAACAGGCCCACAGCTA
ATTGCATAACCAGAAGCTGGCGAGATATATTCAGATTCCTGGTGGCCTGG
AGACTGTCGTGGTTTTTGTGATTGACAACGATCATGCGGCTGTGCCTGAG
GCTGTTGCGAGTTGGCGTATGTCGTCCGGCGATCTTCATGCCCTTCATGT
TCTGCGGCACTGTGGTGCTCATGTAGACGGCCTGCGATGCCTGCGGTGCT
TCCATGTCGCTGAGTGGAATCTGTTCGTAGGTGGTCGCATAGCGCAGTGC
CCTACTATGATCGCTAACTGGAGCCGTCGGCTGTGCTGGTTGCGCTGGAG
GATCGGG
BS09173.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1806-PA | 1200 | CG1806-RA | 310..1200 | 907..17 | 4430 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:45:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1806-RB | 1582 | CG1806-RB | 573..1463 | 907..17 | 4440 | 99.9 | Minus |
CG1806-RA | 1648 | CG1806-RA | 639..1529 | 907..17 | 4440 | 99.9 | Minus |
CG1492-RB | 2289 | CG1492-RB | 2215..2289 | 17..91 | 360 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:45:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12009240..12009572 | 503..171 | 1665 | 100 | Minus |
X | 23542271 | X | 12009023..12009174 | 654..503 | 760 | 100 | Minus |
X | 23542271 | X | 12009632..12009785 | 170..17 | 755 | 99.4 | Minus |
X | 23542271 | X | 12008768..12008898 | 783..653 | 655 | 100 | Minus |
X | 23542271 | X | 12008579..12008705 | 907..781 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:45:38 has no hits.
BS09173.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:01:33 Download gff for
BS09173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1806-PA | 310..1200 | 17..907 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:08:49 Download gff for
BS09173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1806-PA | 310..1200 | 17..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:14:57 Download gff for
BS09173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1806-RA | 639..1529 | 17..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:51 Download gff for
BS09173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1806-RA | 639..1529 | 17..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:51 Download gff for
BS09173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12009023..12009174 | 503..654 | 100 | -> | Minus |
X | 12009632..12009785 | 17..170 | 99 | | Minus |
X | 12009241..12009572 | 171..502 | 100 | -> | Minus |
X | 12008579..12008704 | 782..907 | 100 | -> | Minus |
X | 12008770..12008896 | 655..781 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:14:57 Download gff for
BS09173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11902612..11902737 | 782..907 | 100 | -> | Minus |
arm_X | 11902803..11902929 | 655..781 | 100 | -> | Minus |
arm_X | 11903056..11903207 | 503..654 | 100 | -> | Minus |
arm_X | 11903274..11903605 | 171..502 | 100 | -> | Minus |
arm_X | 11903665..11903818 | 17..170 | 99 | | Minus |
BS09173.5prime Sequence
871 bp (826 high quality bases) assembled on 2006-01-24
> BS09173.5prime
GAAGTTATCAGTCGACATGCCAGTGCAGCAAGTGCGTCCCGTGAGCACCT
ACGACAACTTGGGCGTCTCTCAGTCCAGGCAGCTGACGGCCGGAATGGCT
GGCGAACCGGAAACGGAAGTCGAAGTGGAGCTCAATGGCAGCCACACCAG
CCATAGCATAGCCGCTGTGAAGGCGGCTCTGAACGATGCCAAGTCCAAGT
TCTTCGGCATCAACAACTATGAGTCACCCATGGCCAGTAAGAGTGCAGCA
GTGACGACGATTGCCAAACCGGAGCCAAGATATCAAAATGTTCCGCAACG
CGACGAACTGCCGGCAGTGGCTGCTCCCGATCCTCCAGCGCAACCAGCAC
AGCCGACGGCTCCAGTTAGCGATCATAGTAGGGCACTGCGCTATGCGACC
ACCTACGAACAGATTCCACTCAGCGACATGGAAGCACCGCAGGCATCGCA
GGCCGTCTACATGAGCACCACAGTGCCGCAGAACATGAAGGGCATGAAGA
TCGCCGGACGACATACGCCAACTCGCAACAGCCTCAGGCACAGCCGCATG
ATCGTTGTCAATCACAAAAACCACGACAGTCTCCAGGCCACCAGGAATCT
GAATATATCTCGCCAGCTTCTGGTTATGCAATTAGCTGTGGGCCTGTTCA
TCGTGGGTCTTGCCGTTTGGATACTAATCCTAGCCCCCAATGCGTCCATA
TTGATCAATCCGTATCTGAGTGGATTGTCGCTGCTATTGGCCAGCATTGC
GGGGCTCATACTGCTGCGAAGGGATCACAAGATCACGGAGCACAGACCGC
AGACCAATAGTTGCTACAAGGTCCTGCTGGCCGAGTCGTATGTGTTCACT
GGCCTGGCGTTGATCTTCTGC
BS09173.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1806-PA | 1200 | CG1806-RA | 1..855 | 17..871 | 4275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:10:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1806-RB | 1582 | CG1806-RB | 263..1118 | 16..871 | 4280 | 100 | Plus |
CG1806-RA | 1648 | CG1806-RA | 329..1184 | 16..871 | 4280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:10:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12008269..12008705 | 16..452 | 2185 | 100 | Plus |
X | 23542271 | X | 12009023..12009174 | 579..730 | 760 | 100 | Plus |
X | 23542271 | X | 12009240..12009381 | 730..871 | 710 | 100 | Plus |
X | 23542271 | X | 12008768..12008898 | 450..580 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:10:17 has no hits.
BS09173.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:01:34 Download gff for
BS09173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1806-PA | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:08:50 Download gff for
BS09173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1806-PA | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:23:15 Download gff for
BS09173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1806-RA | 326..1184 | 10..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:12 Download gff for
BS09173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1806-RA | 326..1184 | 10..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:12 Download gff for
BS09173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12009241..12009381 | 731..871 | 100 | | Plus |
X | 12008266..12008704 | 10..451 | 99 | -> | Plus |
X | 12008770..12008896 | 452..578 | 100 | -> | Plus |
X | 12009023..12009174 | 579..730 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:23:15 Download gff for
BS09173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11902299..11902737 | 10..451 | 99 | -> | Plus |
arm_X | 11902803..11902929 | 452..578 | 100 | -> | Plus |
arm_X | 11903056..11903207 | 579..730 | 100 | -> | Plus |
arm_X | 11903274..11903414 | 731..871 | 100 | | Plus |
BS09173.complete Sequence
1232 bp assembled on 2008-08-15
GenBank Submission: FJ636367
> BS09173.complete
GAAGTTATCAGTCGACATGCCAGTGCAGCAAGTGCGTCCCGTGAGCACCT
ACGACAACTTGGGCGTCTCTCAGTCCAGGCAGCTGACGGCCGGAATGGCT
GGCGAACCGGAAACGGAAGTCGAAGTGGAGCTCAATGGCAGCCACACCAG
CCATAGCATAGCCGCTGTGAAGGCGGCTCTGAACGATGCCAAGTCCAAGT
TCTTCGGCATCAACAACTATGAGTCACCCATGGCCAGTAAGAGTGCAGCA
GTGACGACGATTGCCAAACCGGAGCCAAGATATCAAAATGTTCCGCAACG
CGACGAACTGCCGGCAGTGGCTGCTCCCGATCCTCCAGCGCAACCAGCAC
AGCCGACGGCTCCAGTTAGCGATCATAGTAGGGCACTGCGCTATGCGACC
ACCTACGAACAGATTCCACTCAGCGACATGGAAGCACCGCAGGCATCGCA
GGCCGTCTACATGAGCACCACAGTGCCGCAGAACATGAAGGGCATGAAGA
TCGCCGGACGACATACGCCAACTCGCAACAGCCTCAGGCACAGCCGCATG
ATCGTTGTCAATCACAAAAACCACGACAGTCTCCAGGCCACCAGGAATCT
GAATATATCTCGCCAGCTTCTGGTTATGCAATTAGCTGTGGGCCTGTTCA
TCGTGGGTCTTGCCGTTTGGATACTAATCCTAGCCCCCAATGCGTCCATA
TTGATCAATCCGTATCTGAGTGGATTGTCGCTGCTATTGGCCAGCATTGC
GGGGCTCATACTGCTGCGAAGGGATCACAAGATCACGGAGCACAGACCGC
AGACCAATAGTTGCTACAAGGTCCTGCTGGCCGAGTCGTATGTGTTCACT
GGCCTGGCGTTGATCTTCTGCTGCTTGGCCCTCGTCTGTGCGGCAATTGA
GTTCGCGGAGCTCATCTCATCCGCAGACGGAGAATGTGGACCAACATCGA
GCTCATTGCTTAGCTATCACAATTGCACCTGCTTGGCGGCAGGTGAGGTG
GTGGCCAACTACTCCTCCGAGGCTCCAATGGCATTTGCAGTTGGTCAGGA
GGAGGCGTCACAAAACGATGGTTGTGCCGAGCTTCGGATCGAATGGAAGT
ATCTGCTCGCCTTCTCCATGGCGCTCAACACTTTGGGCATTGTTGCAACA
TTCTTATACATAACGTTATTTATTTGTTGCCACCGCAAGCGAGAACACTT
TTACACGTCAGTGTAGAAGCTTTCTAGACCAT
BS09173.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:09:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1806-RB | 1200 | CG1806-PB | 1..1200 | 17..1216 | 5985 | 99.9 | Plus |
CG1806-RA | 1200 | CG1806-PA | 1..1200 | 17..1216 | 5985 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1806-RB | 1582 | CG1806-RB | 263..1463 | 16..1216 | 5990 | 99.9 | Plus |
CG1806-RA | 1648 | CG1806-RA | 329..1529 | 16..1216 | 5990 | 99.9 | Plus |
CG1492-RB | 2289 | CG1492-RB | 2215..2289 | 1216..1142 | 360 | 98.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12008269..12008705 | 16..452 | 2185 | 100 | Plus |
X | 23542271 | X | 12009240..12009572 | 730..1062 | 1665 | 100 | Plus |
X | 23542271 | X | 12009023..12009174 | 579..730 | 760 | 100 | Plus |
X | 23542271 | X | 12009632..12009785 | 1063..1216 | 755 | 99.4 | Plus |
X | 23542271 | X | 12008768..12008898 | 450..580 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:09:44 has no hits.
BS09173.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:55:14 Download gff for
BS09173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1806-RA | 324..1527 | 10..1216 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:15 Download gff for
BS09173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1806-RA | 330..1529 | 17..1216 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:49 Download gff for
BS09173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1806-RA | 328..1527 | 17..1216 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:47 Download gff for
BS09173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1806-RA | 330..1529 | 17..1216 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:47 Download gff for
BS09173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12009023..12009174 | 579..730 | 100 | -> | Plus |
X | 12009241..12009572 | 731..1062 | 100 | -> | Plus |
X | 12009632..12009785 | 1063..1216 | 99 | | Plus |
X | 12008270..12008704 | 17..451 | 100 | -> | Plus |
X | 12008770..12008896 | 452..578 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:15 Download gff for
BS09173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11903665..11903818 | 1063..1216 | 99 | | Plus |
arm_X | 11902303..11902737 | 17..451 | 100 | -> | Plus |
arm_X | 11902803..11902929 | 452..578 | 100 | -> | Plus |
arm_X | 11903056..11903207 | 579..730 | 100 | -> | Plus |
arm_X | 11903274..11903605 | 731..1062 | 100 | -> | Plus |
BS09173.pep Sequence
Translation from 16 to 1215
> BS09173.pep
MPVQQVRPVSTYDNLGVSQSRQLTAGMAGEPETEVEVELNGSHTSHSIAA
VKAALNDAKSKFFGINNYESPMASKSAAVTTIAKPEPRYQNVPQRDELPA
VAAPDPPAQPAQPTAPVSDHSRALRYATTYEQIPLSDMEAPQASQAVYMS
TTVPQNMKGMKIAGRHTPTRNSLRHSRMIVVNHKNHDSLQATRNLNISRQ
LLVMQLAVGLFIVGLAVWILILAPNASILINPYLSGLSLLLASIAGLILL
RRDHKITEHRPQTNSCYKVLLAESYVFTGLALIFCCLALVCAAIEFAELI
SSADGECGPTSSSLLSYHNCTCLAAGEVVANYSSEAPMAFAVGQEEASQN
DGCAELRIEWKYLLAFSMALNTLGIVATFLYITLFICCHRKREHFYTSV*
BS09173.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:21:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1806-PB | 399 | CG1806-PB | 1..399 | 1..399 | 2039 | 100 | Plus |
CG1806-PA | 399 | CG1806-PA | 1..399 | 1..399 | 2039 | 100 | Plus |