Clone BS09173 Report

Search the DGRC for BS09173

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:91
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG1806-RA
Protein status:BS09173.pep: full length peptide match
Sequenced Size:1232

Clone Sequence Records

BS09173.3prime Sequence

907 bp (777 high quality bases) assembled on 2006-01-24

> BS09173.3prime
ATGGTCTAGAAAGCTTCTACACTGACGTGTAAAAGTGTTCTCGCTTGCGG
TGGCAACAAATAAATAACGTTATGTATAAGAATGTTGCAACAATGCCCAA
AGTGTTGAGCGCCATGGAGAAGGCGAGCAGATACTTCCATTCGATCCGAA
GCTCGGCACAACCATCGTTTTGTGACGCCTCCTCCTGACCAACTGCAAAT
GCCATTGGAGCCTCGGAGGAGTAGTTGGCCACCACCTCACCTGCCGCCAA
GCAGGTGCAATTGTGATAGCTAAGCAATGAGCTCGATGTTGGTCCACATT
CTCCGTCTGCGGATGAGATGAGCTCCGCGAACTCAATTGCCGCACAGACG
AGGGCCAAGCAGCAGAAGATCAACGCCAGGCCAGTGAACACATACGACTC
GGCCAGCAGGACCTTGTAGCAACTATTGGTCTGCGGTCTGTGCTCCGTGA
TCTTGTGATCCCTTCGCAGCAGTATGAGCCCCGCAATGCTGGCCAATAGC
AGCGACAATCCACTCAGATACGGATTGATCAATATGGACGCATTGGGGGC
TAGGATTAGTATCCAAACGGCAAGACCCACGATGAACAGGCCCACAGCTA
ATTGCATAACCAGAAGCTGGCGAGATATATTCAGATTCCTGGTGGCCTGG
AGACTGTCGTGGTTTTTGTGATTGACAACGATCATGCGGCTGTGCCTGAG
GCTGTTGCGAGTTGGCGTATGTCGTCCGGCGATCTTCATGCCCTTCATGT
TCTGCGGCACTGTGGTGCTCATGTAGACGGCCTGCGATGCCTGCGGTGCT
TCCATGTCGCTGAGTGGAATCTGTTCGTAGGTGGTCGCATAGCGCAGTGC
CCTACTATGATCGCTAACTGGAGCCGTCGGCTGTGCTGGTTGCGCTGGAG
GATCGGG

BS09173.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG1806-PA 1200 CG1806-RA 310..1200 907..17 4430 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG1806-RB 1582 CG1806-RB 573..1463 907..17 4440 99.9 Minus
CG1806-RA 1648 CG1806-RA 639..1529 907..17 4440 99.9 Minus
CG1492-RB 2289 CG1492-RB 2215..2289 17..91 360 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12009240..12009572 503..171 1665 100 Minus
X 23542271 X 12009023..12009174 654..503 760 100 Minus
X 23542271 X 12009632..12009785 170..17 755 99.4 Minus
X 23542271 X 12008768..12008898 783..653 655 100 Minus
X 23542271 X 12008579..12008705 907..781 635 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:45:38 has no hits.

BS09173.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:01:33 Download gff for BS09173.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1806-PA 310..1200 17..907 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:08:49 Download gff for BS09173.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1806-PA 310..1200 17..907 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:14:57 Download gff for BS09173.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1806-RA 639..1529 17..907 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:51 Download gff for BS09173.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1806-RA 639..1529 17..907 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:51 Download gff for BS09173.3prime
Subject Subject Range Query Range Percent Splice Strand
X 12009023..12009174 503..654 100 -> Minus
X 12009632..12009785 17..170 99   Minus
X 12009241..12009572 171..502 100 -> Minus
X 12008579..12008704 782..907 100 -> Minus
X 12008770..12008896 655..781 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:14:57 Download gff for BS09173.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11902612..11902737 782..907 100 -> Minus
arm_X 11902803..11902929 655..781 100 -> Minus
arm_X 11903056..11903207 503..654 100 -> Minus
arm_X 11903274..11903605 171..502 100 -> Minus
arm_X 11903665..11903818 17..170 99   Minus

BS09173.5prime Sequence

871 bp (826 high quality bases) assembled on 2006-01-24

> BS09173.5prime
GAAGTTATCAGTCGACATGCCAGTGCAGCAAGTGCGTCCCGTGAGCACCT
ACGACAACTTGGGCGTCTCTCAGTCCAGGCAGCTGACGGCCGGAATGGCT
GGCGAACCGGAAACGGAAGTCGAAGTGGAGCTCAATGGCAGCCACACCAG
CCATAGCATAGCCGCTGTGAAGGCGGCTCTGAACGATGCCAAGTCCAAGT
TCTTCGGCATCAACAACTATGAGTCACCCATGGCCAGTAAGAGTGCAGCA
GTGACGACGATTGCCAAACCGGAGCCAAGATATCAAAATGTTCCGCAACG
CGACGAACTGCCGGCAGTGGCTGCTCCCGATCCTCCAGCGCAACCAGCAC
AGCCGACGGCTCCAGTTAGCGATCATAGTAGGGCACTGCGCTATGCGACC
ACCTACGAACAGATTCCACTCAGCGACATGGAAGCACCGCAGGCATCGCA
GGCCGTCTACATGAGCACCACAGTGCCGCAGAACATGAAGGGCATGAAGA
TCGCCGGACGACATACGCCAACTCGCAACAGCCTCAGGCACAGCCGCATG
ATCGTTGTCAATCACAAAAACCACGACAGTCTCCAGGCCACCAGGAATCT
GAATATATCTCGCCAGCTTCTGGTTATGCAATTAGCTGTGGGCCTGTTCA
TCGTGGGTCTTGCCGTTTGGATACTAATCCTAGCCCCCAATGCGTCCATA
TTGATCAATCCGTATCTGAGTGGATTGTCGCTGCTATTGGCCAGCATTGC
GGGGCTCATACTGCTGCGAAGGGATCACAAGATCACGGAGCACAGACCGC
AGACCAATAGTTGCTACAAGGTCCTGCTGGCCGAGTCGTATGTGTTCACT
GGCCTGGCGTTGATCTTCTGC

BS09173.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG1806-PA 1200 CG1806-RA 1..855 17..871 4275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG1806-RB 1582 CG1806-RB 263..1118 16..871 4280 100 Plus
CG1806-RA 1648 CG1806-RA 329..1184 16..871 4280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12008269..12008705 16..452 2185 100 Plus
X 23542271 X 12009023..12009174 579..730 760 100 Plus
X 23542271 X 12009240..12009381 730..871 710 100 Plus
X 23542271 X 12008768..12008898 450..580 655 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:10:17 has no hits.

BS09173.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:01:34 Download gff for BS09173.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1806-PA 1..855 17..871 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:08:50 Download gff for BS09173.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1806-PA 1..855 17..871 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:23:15 Download gff for BS09173.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1806-RA 326..1184 10..871 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:12 Download gff for BS09173.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1806-RA 326..1184 10..871 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:12 Download gff for BS09173.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12009241..12009381 731..871 100   Plus
X 12008266..12008704 10..451 99 -> Plus
X 12008770..12008896 452..578 100 -> Plus
X 12009023..12009174 579..730 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:23:15 Download gff for BS09173.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11902299..11902737 10..451 99 -> Plus
arm_X 11902803..11902929 452..578 100 -> Plus
arm_X 11903056..11903207 579..730 100 -> Plus
arm_X 11903274..11903414 731..871 100   Plus

BS09173.complete Sequence

1232 bp assembled on 2008-08-15

GenBank Submission: FJ636367

> BS09173.complete
GAAGTTATCAGTCGACATGCCAGTGCAGCAAGTGCGTCCCGTGAGCACCT
ACGACAACTTGGGCGTCTCTCAGTCCAGGCAGCTGACGGCCGGAATGGCT
GGCGAACCGGAAACGGAAGTCGAAGTGGAGCTCAATGGCAGCCACACCAG
CCATAGCATAGCCGCTGTGAAGGCGGCTCTGAACGATGCCAAGTCCAAGT
TCTTCGGCATCAACAACTATGAGTCACCCATGGCCAGTAAGAGTGCAGCA
GTGACGACGATTGCCAAACCGGAGCCAAGATATCAAAATGTTCCGCAACG
CGACGAACTGCCGGCAGTGGCTGCTCCCGATCCTCCAGCGCAACCAGCAC
AGCCGACGGCTCCAGTTAGCGATCATAGTAGGGCACTGCGCTATGCGACC
ACCTACGAACAGATTCCACTCAGCGACATGGAAGCACCGCAGGCATCGCA
GGCCGTCTACATGAGCACCACAGTGCCGCAGAACATGAAGGGCATGAAGA
TCGCCGGACGACATACGCCAACTCGCAACAGCCTCAGGCACAGCCGCATG
ATCGTTGTCAATCACAAAAACCACGACAGTCTCCAGGCCACCAGGAATCT
GAATATATCTCGCCAGCTTCTGGTTATGCAATTAGCTGTGGGCCTGTTCA
TCGTGGGTCTTGCCGTTTGGATACTAATCCTAGCCCCCAATGCGTCCATA
TTGATCAATCCGTATCTGAGTGGATTGTCGCTGCTATTGGCCAGCATTGC
GGGGCTCATACTGCTGCGAAGGGATCACAAGATCACGGAGCACAGACCGC
AGACCAATAGTTGCTACAAGGTCCTGCTGGCCGAGTCGTATGTGTTCACT
GGCCTGGCGTTGATCTTCTGCTGCTTGGCCCTCGTCTGTGCGGCAATTGA
GTTCGCGGAGCTCATCTCATCCGCAGACGGAGAATGTGGACCAACATCGA
GCTCATTGCTTAGCTATCACAATTGCACCTGCTTGGCGGCAGGTGAGGTG
GTGGCCAACTACTCCTCCGAGGCTCCAATGGCATTTGCAGTTGGTCAGGA
GGAGGCGTCACAAAACGATGGTTGTGCCGAGCTTCGGATCGAATGGAAGT
ATCTGCTCGCCTTCTCCATGGCGCTCAACACTTTGGGCATTGTTGCAACA
TTCTTATACATAACGTTATTTATTTGTTGCCACCGCAAGCGAGAACACTT
TTACACGTCAGTGTAGAAGCTTTCTAGACCAT

BS09173.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:09:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG1806-RB 1200 CG1806-PB 1..1200 17..1216 5985 99.9 Plus
CG1806-RA 1200 CG1806-PA 1..1200 17..1216 5985 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG1806-RB 1582 CG1806-RB 263..1463 16..1216 5990 99.9 Plus
CG1806-RA 1648 CG1806-RA 329..1529 16..1216 5990 99.9 Plus
CG1492-RB 2289 CG1492-RB 2215..2289 1216..1142 360 98.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12008269..12008705 16..452 2185 100 Plus
X 23542271 X 12009240..12009572 730..1062 1665 100 Plus
X 23542271 X 12009023..12009174 579..730 760 100 Plus
X 23542271 X 12009632..12009785 1063..1216 755 99.4 Plus
X 23542271 X 12008768..12008898 450..580 655 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:09:44 has no hits.

BS09173.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:55:14 Download gff for BS09173.complete
Subject Subject Range Query Range Percent Splice Strand
CG1806-RA 324..1527 10..1216 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:15 Download gff for BS09173.complete
Subject Subject Range Query Range Percent Splice Strand
CG1806-RA 330..1529 17..1216 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:49 Download gff for BS09173.complete
Subject Subject Range Query Range Percent Splice Strand
CG1806-RA 328..1527 17..1216 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:47 Download gff for BS09173.complete
Subject Subject Range Query Range Percent Splice Strand
CG1806-RA 330..1529 17..1216 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:47 Download gff for BS09173.complete
Subject Subject Range Query Range Percent Splice Strand
X 12009023..12009174 579..730 100 -> Plus
X 12009241..12009572 731..1062 100 -> Plus
X 12009632..12009785 1063..1216 99   Plus
X 12008270..12008704 17..451 100 -> Plus
X 12008770..12008896 452..578 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:15 Download gff for BS09173.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11903665..11903818 1063..1216 99   Plus
arm_X 11902303..11902737 17..451 100 -> Plus
arm_X 11902803..11902929 452..578 100 -> Plus
arm_X 11903056..11903207 579..730 100 -> Plus
arm_X 11903274..11903605 731..1062 100 -> Plus

BS09173.pep Sequence

Translation from 16 to 1215

> BS09173.pep
MPVQQVRPVSTYDNLGVSQSRQLTAGMAGEPETEVEVELNGSHTSHSIAA
VKAALNDAKSKFFGINNYESPMASKSAAVTTIAKPEPRYQNVPQRDELPA
VAAPDPPAQPAQPTAPVSDHSRALRYATTYEQIPLSDMEAPQASQAVYMS
TTVPQNMKGMKIAGRHTPTRNSLRHSRMIVVNHKNHDSLQATRNLNISRQ
LLVMQLAVGLFIVGLAVWILILAPNASILINPYLSGLSLLLASIAGLILL
RRDHKITEHRPQTNSCYKVLLAESYVFTGLALIFCCLALVCAAIEFAELI
SSADGECGPTSSSLLSYHNCTCLAAGEVVANYSSEAPMAFAVGQEEASQN
DGCAELRIEWKYLLAFSMALNTLGIVATFLYITLFICCHRKREHFYTSV*

BS09173.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG1806-PB 399 CG1806-PB 1..399 1..399 2039 100 Plus
CG1806-PA 399 CG1806-PA 1..399 1..399 2039 100 Plus