Clone BS09175 Report

Search the DGRC for BS09175

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:91
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptSpn88Eb-RA
Protein status:BS09175.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09175.3prime Sequence

861 bp (814 high quality bases) assembled on 2006-01-24

> BS09175.3prime
ATGGTCTAGAAAGCTTCTAGTGCTGCATTTGCCTGGGATCGCTGTAGACG
CCCGCAAAGAGAATCGTGTCTACCTTTTCATCATAGATAAGAAACACGAA
CGGGTGGTTGCAGTTGAATTTGGTGGGATCGGGCTGCCTGCTGGATCGGC
TGACCAAGAGGATGGTGGCCGCTGCCGCAGTGCTGCCCACTTCGTCCACT
TTGATCTTGGCCAGATGTTGGGCGTCATCGATGACAAGGGAAATGGGATC
GGCAGTCAGGTCTCCAAAGGTGGCGTTTCTCGTGAACATTGTGTTCACTC
CCATTAAGCTGAGGATAGGGGTCAGTTCCAGGCGCTGCTCAAACTGGAAC
TTGGGCAGCGACAACTCGATCTTCTGCGGCAATGCCCGTTCGAACCATTT
CTTAACGGAATCGGCATTTAGCCGGGATATGACACGGTTAAGACTGATTT
TGTTGGAGTTCGGCAGAATGATAATCATGGAGATATCGGATTTGGACTCG
GGGGTGGAAATGTGCGTCTCCTTCGACTTGTATATGGTGCGGTAGGGCAG
CTTGATGATCTGCGATTGCAAGCCCTCATCGATGGTCATCTTGAAGGCGC
CCGTCTTGTGCATCATGTAAACCATTTCCTGCTCACGCTCGTTAATGAAG
AATGGCTTCAAGGCGGTCTCCTCCACCTTGAACTGGCTGAGCCACTGGCC
CTTCATGTAGGCGGCGTTGGCCAGCACCAACATGGTGTGGGGTGTGATCT
CCTCGGAGCTGAGCATGTCGCGGATCTGGTTGTGCGTCTTATCGGCTATC
CAGTCGTTAATTTCCTTTAGGCCAGTCTCCGGATCATTCTTGAAATCCAT
TCTTTGGTTGC

BS09175.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG6687-PA 1281 CG6687-RA 449..1281 849..17 4165 100 Minus
CG18525-PA 1284 Spn5-RA 574..627 730..677 145 90.7 Minus
CG18525-PB 1284 Spn5-RB 574..627 730..677 145 90.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
Spn88Eb-RA 1431 CG6687-RA 527..1375 861..14 4220 99.9 Minus
Spn88Ea-RB 1518 CG18525-RB 597..748 817..666 295 80.4 Minus
Spn88Ea-RA 1521 CG18525-RA 600..751 817..666 295 80.4 Minus
Spn88Ea-RB 1518 CG18525-RB 1053..1255 361..156 265 76.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15207124..15207669 317..861 2680 99.8 Plus
3R 32079331 3R 15206759..15207061 14..316 1515 100 Plus
3R 32079331 3R 15203899..15204050 666..817 295 79.6 Plus
3R 32079331 3R 15203332..15203409 156..233 195 83.3 Plus
Blast to na_te.dros performed on 2015-02-10 18:59:27 has no hits.

BS09175.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:01:37 Download gff for BS09175.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6687-PA 436..1281 17..861 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:08:54 Download gff for BS09175.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6687-PA 436..1281 17..861 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:53:54 Download gff for BS09175.3prime
Subject Subject Range Query Range Percent Splice Strand
Spn88Eb-RA 527..1386 4..861 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:02 Download gff for BS09175.3prime
Subject Subject Range Query Range Percent Splice Strand
Spn88Eb-RA 527..1386 4..861 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:02 Download gff for BS09175.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15206748..15207061 4..316 98 <- Plus
3R 15207124..15207669 317..861 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:53:54 Download gff for BS09175.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11032470..11032783 4..316 98 <- Plus
arm_3R 11032846..11033391 317..861 99   Plus

BS09175.5prime Sequence

939 bp (793 high quality bases) assembled on 2006-01-24

> BS09175.5prime
GAAGTTATCAGTCGACATGCACACCTTCAGTTTGGTCCTGTTGGCCCTCC
TTCCCGTAGTAACCATAGCTGCCTTGGACAAGCCGGAGCTATCATTTCTA
AATGAATTCTCACAAATTTTCAAGGGAGAACGAGACTTCTCCTTAGCATT
AATGAAACAGATCCGAGAGATATATCCCAGCGGCAATCTGTTCTTCTCGC
CGTTCAGCACCTACAACGCCCTGCTCCTCGCCTACTTCAGTTCCTCCGAG
CAGACGGAACGTGAGCTGGCCCAGGCACTGAACCTGGGATGGGCATTAAA
CAAACAGCAGGTCCTAGTTTCGTACACGTTGGCACAGAGGCAGGACGAAT
TTCGTTGGCGCCAAAGTCCCATGGAGCTCTCGTCTGCGAACAGAATTTTC
GTCGACAGGACAATAAATGTTTCCAACAAATTCAACACTTTACTCTACGG
GGCAACCAAAGAATTGGATTTCAAGAATGATCCGGAGACTGGCCTAAAGG
AAATTAACGACTGGATAGCCGATAAGACGCACAACCAGATCCGCGACATG
CTCAGCTCCGAGGAGATCACACCCCACACCATGTTGGTGCTGGCCAACGC
CGCCTACATGAAGGGCCAGTGGCTCAGCCAGTTCAAGGTGGAGGAGACCG
CCTTGAAGCCATTCTTCATTAACGAGCGTGAGCAGGAAATGGTTTACATG
ATGCACAAGACGGGCGCCTTCAAGATGACCATCGATGAGGGCTTGCAATC
GCAGATCATCAAGCTGCCCTACCGCACCATATACAAGTCGAAGGAGACGC
ACATTTCCACCCCCGAGTCCAAATCCGATATCTCCATGATTATCATTCTG
CCGAACTCCAACAAAATCAGTCTTAACCGTGTCATATCCCGGCTAAATGC
CGATTCCGTTAAGAAATGGTTCGAACGGGCATTGCCGCA

BS09175.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6687-PA 1281 CG6687-RA 1..923 17..939 4615 100 Plus
CG18525-PA 1284 Spn5-RA 574..627 584..637 145 90.7 Plus
CG18525-PB 1284 Spn5-RB 574..627 584..637 145 90.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
Spn88Eb-RA 1431 CG6687-RA 92..1014 17..939 4615 100 Plus
Spn88Ea-RB 1518 CG18525-RB 597..748 497..648 295 80.4 Plus
Spn88Ea-RA 1521 CG18525-RA 600..751 497..648 295 80.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15207182..15208104 939..17 4615 100 Minus
3R 32079331 3R 15203899..15204050 648..497 295 79.6 Minus
Blast to na_te.dros performed on 2015-02-11 11:47:20 has no hits.

BS09175.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:01:38 Download gff for BS09175.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6687-PA 1..922 17..938 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:08:56 Download gff for BS09175.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6687-PA 1..922 17..938 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:08:05 Download gff for BS09175.5prime
Subject Subject Range Query Range Percent Splice Strand
Spn88Eb-RA 81..1013 9..938 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:06:00 Download gff for BS09175.5prime
Subject Subject Range Query Range Percent Splice Strand
Spn88Eb-RA 81..1013 9..938 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:06:00 Download gff for BS09175.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15207183..15208115 9..938 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:08:05 Download gff for BS09175.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11032905..11033837 9..938 99   Minus

BS09175.complete Sequence

1313 bp (1313 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636368

> BS09175.complete
GAAGTTATCAGTCGACATGCACACCTTCAGTTTGGTCCTGTTGGCCCTCC
TTCCCGTAGTAACCATAGCTGCCTTGGACAAGCCGGAGCTATCATTTCTA
AATGAATTCTCACAAATTTTCAAGGGAGAACGAGACTTCTCCTTAGCATT
AATGAAACAGATCCGAGAGATATATCCCAGCGGCAATCTGTTCTTCTCGC
CGTTCAGCACCTACAACGCCCTGCTCCTCGCCTACTTCAGTTCCTCCGAG
CAGACGGAACGTGAGCTGGCCCAGGCACTGAACCTGGGATGGGCATTAAA
CAAACAGCAGGTCCTAGTTTCGTACACGTTGGCACAGAGGCAGGACGAAT
TTCGTTGGCGCCAAAGTCCCATGGAGCTCTCGTCTGCGAACAGAATTTTC
GTCGACAGGACAATAAATGTTTCCAACAAATTCAACACTTTACTCTACGG
GGCAACCAAAGAATTGGATTTCAAGAATGATCCGGAGACTGGCCTAAAGG
AAATTAACGACTGGATAGCCGATAAGACGCACAACCAGATCCGCGACATG
CTCAGCTCCGAGGAGATCACACCCCACACCATGTTGGTGCTGGCCAACGC
CGCCTACATGAAGGGCCAGTGGCTCAGCCAGTTCAAGGTGGAGGAGACCG
CCTTGAAGCCATTCTTCATTAACGAGCGTGAGCAGGAAATGGTTTACATG
ATGCACAAGACGGGCGCCTTCAAGATGACCATCGATGAGGGCTTGCAATC
GCAGATCATCAAGCTGCCCTACCGCACCATATACAAGTCGAAGGAGACGC
ACATTTCCACCCCCGAGTCCAAATCCGATATCTCCATGATTATCATTCTG
CCGAACTCCAACAAAATCAGTCTTAACCGTGTCATATCCCGGCTAAATGC
CGATTCCGTTAAGAAATGGTTCGAACGGGCATTGCCGCAGAAGATCGAGT
TGTCGCTGCCCAAGTTCCAGTTTGAGCAGCGCCTGGAACTGACCCCTATC
CTCAGCTTAATGGGAGTGAACACAATGTTCACGAGAAACGCCACCTTTGG
AGACCTGACTGCCGATCCCATTTCCCTTGTCATCGATGACGCCCAACATC
TGGCCAAGATCAAAGTGGACGAAGTGGGCAGCACTGCGGCAGCGGCCACC
ATCCTCTTGGTCAGCCGATCCAGCAGGCAGCCCGATCCCACCAAATTCAA
CTGCAACCACCCGTTCGTGTTTCTTATCTATGATGAAAAGGTAGACACGA
TTCTCTTTGCGGGCGTCTACAGCGATCCCAGGCAAATGCAGCACTAGAAG
CTTTCTAGACCAT

BS09175.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
Spn88Eb-RA 1281 CG6687-PA 1..1281 17..1297 6405 100 Plus
Spn88Ea-RB 1284 CG18525-PB 487..638 497..648 295 79.6 Plus
Spn88Ea-RA 1284 CG18525-PA 487..638 497..648 295 79.6 Plus
Spn88Ea-RB 1284 CG18525-PB 1068..1145 1081..1158 195 83.3 Plus
Spn88Ea-RB 1284 CG18525-PB 943..1020 953..1030 180 82.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
Spn88Eb-RA 1431 CG6687-RA 92..1375 17..1300 6420 100 Plus
Spn88Ea-RB 1518 CG18525-RB 597..748 497..648 295 79.6 Plus
Spn88Ea-RA 1521 CG18525-RA 600..751 497..648 295 79.6 Plus
Spn88Ea-RB 1518 CG18525-RB 1178..1255 1081..1158 195 83.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15207124..15208104 997..17 4905 100 Minus
3R 32079331 3R 15206759..15207061 1300..998 1515 100 Minus
3R 32079331 3R 15203899..15204050 648..497 295 79.6 Minus
3R 32079331 3R 15203332..15203409 1158..1081 195 83.3 Minus
Blast to na_te.dros performed on 2014-11-27 23:32:34 has no hits.

BS09175.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:56 Download gff for BS09175.complete
Subject Subject Range Query Range Percent Splice Strand
CG6687-RA 1..1281 17..1297 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:30 Download gff for BS09175.complete
Subject Subject Range Query Range Percent Splice Strand
CG6687-RA 81..1386 9..1310 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:14 Download gff for BS09175.complete
Subject Subject Range Query Range Percent Splice Strand
Spn88Eb-RA 92..1372 17..1297 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:57 Download gff for BS09175.complete
Subject Subject Range Query Range Percent Splice Strand
CG6687-RA 81..1386 9..1310 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:47 Download gff for BS09175.complete
Subject Subject Range Query Range Percent Splice Strand
Spn88Eb-RA 92..1372 17..1297 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:47 Download gff for BS09175.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15206762..15207061 998..1297 100 <- Minus
3R 15207124..15208104 17..997 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:14 Download gff for BS09175.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11032484..11032783 998..1297 100 <- Minus
arm_3R 11032846..11033826 17..997 100   Minus

BS09175.pep Sequence

Translation from 16 to 1296

> BS09175.pep
MHTFSLVLLALLPVVTIAALDKPELSFLNEFSQIFKGERDFSLALMKQIR
EIYPSGNLFFSPFSTYNALLLAYFSSSEQTERELAQALNLGWALNKQQVL
VSYTLAQRQDEFRWRQSPMELSSANRIFVDRTINVSNKFNTLLYGATKEL
DFKNDPETGLKEINDWIADKTHNQIRDMLSSEEITPHTMLVLANAAYMKG
QWLSQFKVEETALKPFFINEREQEMVYMMHKTGAFKMTIDEGLQSQIIKL
PYRTIYKSKETHISTPESKSDISMIIILPNSNKISLNRVISRLNADSVKK
WFERALPQKIELSLPKFQFEQRLELTPILSLMGVNTMFTRNATFGDLTAD
PISLVIDDAQHLAKIKVDEVGSTAAAATILLVSRSSRQPDPTKFNCNHPF
VFLIYDEKVDTILFAGVYSDPRQMQH*

BS09175.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:43:00
Subject Length Description Subject Range Query Range Score Percent Strand
Spn88Eb-PA 426 CG6687-PA 1..426 1..426 2165 100 Plus
Spn88Ea-PB 427 CG18525-PB 1..426 1..425 1079 49.5 Plus
Spn88Ea-PA 427 CG18525-PA 1..426 1..425 1079 49.5 Plus
Spn42Da-PG 379 CG9453-PG 16..374 41..416 399 29.9 Plus
Spn42Da-PD 411 CG9453-PD 48..406 41..416 399 29.9 Plus