Clone BS09177 Report

Search the DGRC for BS09177

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:91
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG12118-RA
Protein status:BS09177.pep: full length peptide match
Sequenced Size:887

Clone Sequence Records

BS09177.3prime Sequence

854 bp (852 high quality bases) assembled on 2006-01-24

> BS09177.3prime
ATGGTCTAGAAAGCTTTCAATGGGCAACCTTGTGCGGCGGCGGCACAAGC
AGCTTCATCAGCTGCCCATAGTGATTCGGCGCTGTGCTATAGATGGTGCC
CGAGAAGCGGGTGCTGTCGTTCTTCTCGGCGGAAATCACTGTGCAACGGT
TCTGTTCCGAAAGCCGCATGTTTAGACCACGGAAGCGTGAGTCCAGCCTG
TATAGATTAGCCCCTTCCCGTGGTAGAAAGAATGGACGTCCGCTAAACGG
ATTCATGAAGTCCGCCCAGTAGCCGTACGATAGCAGGCGATCGCACATCT
CCCGCGCTGCCAGGACAAACTTGGCAGCGCCCATTTCGATGTCTCCTTCG
TGGCTGAGAACAAGCATGGTGATGTTTATGCACTGCTGTGCGACGACGGG
TACCGGGAAGATCTCCAAGAGTGGCACACGGATAAGCAGGGGACACTTAC
AGCAGGTGAATTCCAGGCGCGATTTGTCCGTATTGGGACCCTTGTGAAAG
TTAACCAGGTGGCCAAGCGGCTCGAGCAGACCGACGGTGGTGCTGTCGCC
CTGCCAGGCGGGCCCAATGCCATTTGGCAGATAGAAGCGATTGCCTCTTT
CGGCGGTCAGTTCCCAGTTGGGCTCACTCTCCAAACTATTTAGCTCATCG
TCGTCGTCGAGATCCCGCGACTTGACGGTCTTAAAGTATCCGCCGGCATC
CGACGGTGGGCCATTTCGCTTGGAGTATCTAGCCACCGGAATGATGGCCG
TGTTGGTCACCTTGGTGCTCAGTAGGTCGTTCAGTCTGTTGGATCCGCGA
TGTACGGTATGTGAAATGGACAGGGATGGCGCCCAGATGGTACCCAATAC
GCGA

BS09177.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG12118-PA 855 CG12118-RA 18..855 854..17 4190 100 Minus
CG12118-PB 855 CG12118-RB 18..855 854..17 4190 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:56:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG12118-RB 1260 CG12118-RB 254..1091 854..17 4190 100 Minus
CG12118-RA 1277 CG12118-RA 271..1108 854..17 4190 100 Minus
CG12106-RA 1372 CG12106-RA 958..1262 17..321 1525 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:56:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9195551..9196085 320..854 2675 100 Plus
X 23542271 X 9194919..9195223 17..321 1525 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:56:15 has no hits.

BS09177.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:01:42 Download gff for BS09177.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12118-PA 19..855 17..853 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:09:00 Download gff for BS09177.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12118-PB 19..855 17..853 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:45:42 Download gff for BS09177.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12118-RA 272..1111 13..853 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:29:55 Download gff for BS09177.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12118-RA 272..1111 13..853 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:29:55 Download gff for BS09177.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9194916..9195221 13..319 99 <- Plus
X 9195551..9196084 320..853 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:45:42 Download gff for BS09177.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9088949..9089254 13..319 99 <- Plus
arm_X 9089584..9090117 320..853 100   Plus

BS09177.5prime Sequence

845 bp (729 high quality bases) assembled on 2006-01-24

> BS09177.5prime
GAAGTTATCAGTCGACATGTCTCGTTCATTGAGTCGCGTATTGGGTACCA
TCTGGGCGCCATCCCTGTCCATTTCACATACCGTACATCGCGGATCCAAC
AGACTGAACGACCTACTGAGCACCAAGGTGACCAACACGGCCATCATTCC
GGTGGCTAGATACTCCAAGCGAAATGGCCCACCGTCGGATGCCGGCGGAT
ACTTTAAGACCGTCAAGTCGCGGGATCTCGACGACGACGATGAGCTAAAT
AGTTTGGAGAGTGAGCCCAACTGGGAACTGACCGCCGAAAGAGGCAATCG
CTTCTATCTGCCAAATGGCATTGGGCCCGCCTGGCAGGGCGACAGCACCA
CCGTCGGTCTGCTCGAGCCGCTTGGCCACCTGGTTAACTTTCACAAGGGT
CCCAATACGGACAAATCGCGCCTGGAATTCACCTGCTGTAAGTGTCCCCT
GCTTATCCGTGTGCCACTCTTGGAGATCTTCCCGGTACCCGTCGTCGCAC
AGCAGTGCATAAACATCACCATGCTTGTTCTCAGCCACGAAGGAGACATC
GAAATGGGCGCTGCCAAGTTTGTCCTGGCAGCGCGGGAGATGTGCGATCG
CCTGCTATCGTACGGCTACTGGGCGGACTTCATGAATCCGTTTAGCGGAC
GTCCATTCTTTCTACCACGGGAAGGGGCTAATCTATACAGGCTGGACTCA
CGCTTCCGTGGTCTAAACATGCGGCTTTCGGAACAGAACCGTTGCACAGT
GATTTCCGCCGAGAAGAACGACAGCACCCGCTTCTCGGGCACCATCTATA
GCACAGCGCCGAATCACTATGGGCAGCTGATGAAGCTGCTTGTGC

BS09177.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG12118-PA 855 CG12118-RA 1..829 17..845 4120 99.8 Plus
CG12118-PB 855 CG12118-RB 1..829 17..845 4120 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:16:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12118-RB 1260 CG12118-RB 237..1065 17..845 4130 99.9 Plus
CG12118-RA 1277 CG12118-RA 254..1082 17..845 4130 99.9 Plus
CG12106-RA 1372 CG12106-RA 984..1262 845..567 1395 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:16:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9195551..9196102 568..17 2745 99.8 Minus
X 23542271 X 9194945..9195223 845..567 1395 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:16:20 has no hits.

BS09177.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:01:43 Download gff for BS09177.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12118-PA 1..829 17..845 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:09:02 Download gff for BS09177.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12118-PB 1..829 17..845 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:06:51 Download gff for BS09177.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12118-RA 254..1082 17..845 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:50:20 Download gff for BS09177.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12118-RA 254..1082 17..845 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:50:20 Download gff for BS09177.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9194945..9195221 569..845 100 <- Minus
X 9195551..9196102 17..568 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:06:51 Download gff for BS09177.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9088978..9089254 569..845 100 <- Minus
arm_X 9089584..9090135 17..568 99   Minus

BS09177.complete Sequence

887 bp assembled on 2008-08-15

GenBank Submission: FJ636369

> BS09177.complete
GAAGTTATCAGTCGACATGTCTCGTTCATTGAGTCGCGTATTGGGTACCA
TCTGGGCGCCATCCCTGTCCATTTCACATACCGTACATCGCGGATCCAAC
AGACTGAACGACCTACTGAGCACCAAGGTGACCAACACGGCCATCATTCC
GGTGGCTAGATACTCCAAGCGAAATGGCCCACCGTCGGATGCCGGCGGAT
ACTTTAAGACCGTCAAGTCGCGGGATCTCGACGACGACGATGAGCTAAAT
AGTTTGGAGAGTGAGCCCAACTGGGAACTGACCGCCGAAAGAGGCAATCG
CTTCTATCTGCCAAATGGCATTGGGCCCGCCTGGCAGGGCGACAGCACCA
CCGTCGGTCTGCTCGAGCCGCTTGGCCACCTGGTTAACTTTCACAAGGGT
CCCAATACGGACAAATCGCGCCTGGAATTCACCTGCTGTAAGTGTCCCCT
GCTTATCCGTGTGCCACTCTTGGAGATCTTCCCGGTACCCGTCGTCGCAC
AGCAGTGCATAAACATCACCATGCTTGTTCTCAGCCACGAAGGAGACATC
GAAATGGGCGCTGCCAAGTTTGTCCTGGCAGCGCGGGAGATGTGCGATCG
CCTGCTATCGTACGGCTACTGGGCGGACTTCATGAATCCGTTTAGCGGAC
GTCCATTCTTTCTACCACGGGAAGGGGCTAATCTATACAGGCTGGACTCA
CGCTTCCGTGGTCTAAACATGCGGCTTTCGGAACAGAACCGTTGCACAGT
GATTTCCGCCGAGAAGAACGACAGCACCCGCTTCTCGGGCACCATCTATA
GCACAGCGCCGAATCACTATGGGCAGCTGATGAAGCTGCTTGTGCCGCCG
CCGCACAAGGTTGCCCATTGAAAGCTTTCTAGACCAT

BS09177.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG12118-RB 855 CG12118-PB 1..855 17..871 4260 99.9 Plus
CG12118-RA 855 CG12118-PA 1..855 17..871 4260 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:00:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG12118-RB 1260 CG12118-RB 237..1091 17..871 4260 99.9 Plus
CG12118-RA 1277 CG12118-RA 254..1108 17..871 4260 99.9 Plus
CG12106-RA 1372 CG12106-RA 958..1262 871..567 1525 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9195551..9196102 568..17 2745 99.8 Minus
X 23542271 X 9194919..9195223 871..567 1525 100 Minus
Blast to na_te.dros performed on 2014-11-27 21:00:48 has no hits.

BS09177.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:41:49 Download gff for BS09177.complete
Subject Subject Range Query Range Percent Splice Strand
CG12118-RB 284..1141 17..875 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:41 Download gff for BS09177.complete
Subject Subject Range Query Range Percent Splice Strand
CG12118-RA 254..1107 17..870 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:57:48 Download gff for BS09177.complete
Subject Subject Range Query Range Percent Splice Strand
CG12118-RB 284..1137 17..870 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:53 Download gff for BS09177.complete
Subject Subject Range Query Range Percent Splice Strand
CG12118-RA 254..1107 17..870 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:53 Download gff for BS09177.complete
Subject Subject Range Query Range Percent Splice Strand
X 9194920..9195221 569..870 100 <- Minus
X 9195551..9196102 17..568 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:41 Download gff for BS09177.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9088953..9089254 569..870 100 <- Minus
arm_X 9089584..9090135 17..568 99   Minus

BS09177.pep Sequence

Translation from 16 to 870

> BS09177.pep
MSRSLSRVLGTIWAPSLSISHTVHRGSNRLNDLLSTKVTNTAIIPVARYS
KRNGPPSDAGGYFKTVKSRDLDDDDELNSLESEPNWELTAERGNRFYLPN
GIGPAWQGDSTTVGLLEPLGHLVNFHKGPNTDKSRLEFTCCKCPLLIRVP
LLEIFPVPVVAQQCINITMLVLSHEGDIEMGAAKFVLAAREMCDRLLSYG
YWADFMNPFSGRPFFLPREGANLYRLDSRFRGLNMRLSEQNRCTVISAEK
NDSTRFSGTIYSTAPNHYGQLMKLLVPPPHKVAH*

BS09177.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG12118-PB 284 CG12118-PB 1..284 1..284 1510 100 Plus
CG12118-PA 284 CG12118-PA 1..284 1..284 1510 100 Plus