Clone Sequence Records
BS09177.3prime Sequence
854 bp (852 high quality bases) assembled on 2006-01-24
> BS09177.3prime
ATGGTCTAGAAAGCTTTCAATGGGCAACCTTGTGCGGCGGCGGCACAAGC
AGCTTCATCAGCTGCCCATAGTGATTCGGCGCTGTGCTATAGATGGTGCC
CGAGAAGCGGGTGCTGTCGTTCTTCTCGGCGGAAATCACTGTGCAACGGT
TCTGTTCCGAAAGCCGCATGTTTAGACCACGGAAGCGTGAGTCCAGCCTG
TATAGATTAGCCCCTTCCCGTGGTAGAAAGAATGGACGTCCGCTAAACGG
ATTCATGAAGTCCGCCCAGTAGCCGTACGATAGCAGGCGATCGCACATCT
CCCGCGCTGCCAGGACAAACTTGGCAGCGCCCATTTCGATGTCTCCTTCG
TGGCTGAGAACAAGCATGGTGATGTTTATGCACTGCTGTGCGACGACGGG
TACCGGGAAGATCTCCAAGAGTGGCACACGGATAAGCAGGGGACACTTAC
AGCAGGTGAATTCCAGGCGCGATTTGTCCGTATTGGGACCCTTGTGAAAG
TTAACCAGGTGGCCAAGCGGCTCGAGCAGACCGACGGTGGTGCTGTCGCC
CTGCCAGGCGGGCCCAATGCCATTTGGCAGATAGAAGCGATTGCCTCTTT
CGGCGGTCAGTTCCCAGTTGGGCTCACTCTCCAAACTATTTAGCTCATCG
TCGTCGTCGAGATCCCGCGACTTGACGGTCTTAAAGTATCCGCCGGCATC
CGACGGTGGGCCATTTCGCTTGGAGTATCTAGCCACCGGAATGATGGCCG
TGTTGGTCACCTTGGTGCTCAGTAGGTCGTTCAGTCTGTTGGATCCGCGA
TGTACGGTATGTGAAATGGACAGGGATGGCGCCCAGATGGTACCCAATAC
GCGA
BS09177.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12118-PA | 855 | CG12118-RA | 18..855 | 854..17 | 4190 | 100 | Minus |
CG12118-PB | 855 | CG12118-RB | 18..855 | 854..17 | 4190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:56:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12118-RB | 1260 | CG12118-RB | 254..1091 | 854..17 | 4190 | 100 | Minus |
CG12118-RA | 1277 | CG12118-RA | 271..1108 | 854..17 | 4190 | 100 | Minus |
CG12106-RA | 1372 | CG12106-RA | 958..1262 | 17..321 | 1525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:56:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9195551..9196085 | 320..854 | 2675 | 100 | Plus |
X | 23542271 | X | 9194919..9195223 | 17..321 | 1525 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:56:15 has no hits.
BS09177.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:01:42 Download gff for
BS09177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12118-PA | 19..855 | 17..853 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:09:00 Download gff for
BS09177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12118-PB | 19..855 | 17..853 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:45:42 Download gff for
BS09177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12118-RA | 272..1111 | 13..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:29:55 Download gff for
BS09177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12118-RA | 272..1111 | 13..853 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:29:55 Download gff for
BS09177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9194916..9195221 | 13..319 | 99 | <- | Plus |
X | 9195551..9196084 | 320..853 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:45:42 Download gff for
BS09177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9088949..9089254 | 13..319 | 99 | <- | Plus |
arm_X | 9089584..9090117 | 320..853 | 100 | | Plus |
BS09177.5prime Sequence
845 bp (729 high quality bases) assembled on 2006-01-24
> BS09177.5prime
GAAGTTATCAGTCGACATGTCTCGTTCATTGAGTCGCGTATTGGGTACCA
TCTGGGCGCCATCCCTGTCCATTTCACATACCGTACATCGCGGATCCAAC
AGACTGAACGACCTACTGAGCACCAAGGTGACCAACACGGCCATCATTCC
GGTGGCTAGATACTCCAAGCGAAATGGCCCACCGTCGGATGCCGGCGGAT
ACTTTAAGACCGTCAAGTCGCGGGATCTCGACGACGACGATGAGCTAAAT
AGTTTGGAGAGTGAGCCCAACTGGGAACTGACCGCCGAAAGAGGCAATCG
CTTCTATCTGCCAAATGGCATTGGGCCCGCCTGGCAGGGCGACAGCACCA
CCGTCGGTCTGCTCGAGCCGCTTGGCCACCTGGTTAACTTTCACAAGGGT
CCCAATACGGACAAATCGCGCCTGGAATTCACCTGCTGTAAGTGTCCCCT
GCTTATCCGTGTGCCACTCTTGGAGATCTTCCCGGTACCCGTCGTCGCAC
AGCAGTGCATAAACATCACCATGCTTGTTCTCAGCCACGAAGGAGACATC
GAAATGGGCGCTGCCAAGTTTGTCCTGGCAGCGCGGGAGATGTGCGATCG
CCTGCTATCGTACGGCTACTGGGCGGACTTCATGAATCCGTTTAGCGGAC
GTCCATTCTTTCTACCACGGGAAGGGGCTAATCTATACAGGCTGGACTCA
CGCTTCCGTGGTCTAAACATGCGGCTTTCGGAACAGAACCGTTGCACAGT
GATTTCCGCCGAGAAGAACGACAGCACCCGCTTCTCGGGCACCATCTATA
GCACAGCGCCGAATCACTATGGGCAGCTGATGAAGCTGCTTGTGC
BS09177.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12118-PA | 855 | CG12118-RA | 1..829 | 17..845 | 4120 | 99.8 | Plus |
CG12118-PB | 855 | CG12118-RB | 1..829 | 17..845 | 4120 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:16:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12118-RB | 1260 | CG12118-RB | 237..1065 | 17..845 | 4130 | 99.9 | Plus |
CG12118-RA | 1277 | CG12118-RA | 254..1082 | 17..845 | 4130 | 99.9 | Plus |
CG12106-RA | 1372 | CG12106-RA | 984..1262 | 845..567 | 1395 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:16:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9195551..9196102 | 568..17 | 2745 | 99.8 | Minus |
X | 23542271 | X | 9194945..9195223 | 845..567 | 1395 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:16:20 has no hits.
BS09177.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:01:43 Download gff for
BS09177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12118-PA | 1..829 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:09:02 Download gff for
BS09177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12118-PB | 1..829 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:06:51 Download gff for
BS09177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12118-RA | 254..1082 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:50:20 Download gff for
BS09177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12118-RA | 254..1082 | 17..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:50:20 Download gff for
BS09177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9194945..9195221 | 569..845 | 100 | <- | Minus |
X | 9195551..9196102 | 17..568 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:06:51 Download gff for
BS09177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9088978..9089254 | 569..845 | 100 | <- | Minus |
arm_X | 9089584..9090135 | 17..568 | 99 | | Minus |
BS09177.complete Sequence
887 bp assembled on 2008-08-15
GenBank Submission: FJ636369
> BS09177.complete
GAAGTTATCAGTCGACATGTCTCGTTCATTGAGTCGCGTATTGGGTACCA
TCTGGGCGCCATCCCTGTCCATTTCACATACCGTACATCGCGGATCCAAC
AGACTGAACGACCTACTGAGCACCAAGGTGACCAACACGGCCATCATTCC
GGTGGCTAGATACTCCAAGCGAAATGGCCCACCGTCGGATGCCGGCGGAT
ACTTTAAGACCGTCAAGTCGCGGGATCTCGACGACGACGATGAGCTAAAT
AGTTTGGAGAGTGAGCCCAACTGGGAACTGACCGCCGAAAGAGGCAATCG
CTTCTATCTGCCAAATGGCATTGGGCCCGCCTGGCAGGGCGACAGCACCA
CCGTCGGTCTGCTCGAGCCGCTTGGCCACCTGGTTAACTTTCACAAGGGT
CCCAATACGGACAAATCGCGCCTGGAATTCACCTGCTGTAAGTGTCCCCT
GCTTATCCGTGTGCCACTCTTGGAGATCTTCCCGGTACCCGTCGTCGCAC
AGCAGTGCATAAACATCACCATGCTTGTTCTCAGCCACGAAGGAGACATC
GAAATGGGCGCTGCCAAGTTTGTCCTGGCAGCGCGGGAGATGTGCGATCG
CCTGCTATCGTACGGCTACTGGGCGGACTTCATGAATCCGTTTAGCGGAC
GTCCATTCTTTCTACCACGGGAAGGGGCTAATCTATACAGGCTGGACTCA
CGCTTCCGTGGTCTAAACATGCGGCTTTCGGAACAGAACCGTTGCACAGT
GATTTCCGCCGAGAAGAACGACAGCACCCGCTTCTCGGGCACCATCTATA
GCACAGCGCCGAATCACTATGGGCAGCTGATGAAGCTGCTTGTGCCGCCG
CCGCACAAGGTTGCCCATTGAAAGCTTTCTAGACCAT
BS09177.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:00:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12118-RB | 855 | CG12118-PB | 1..855 | 17..871 | 4260 | 99.9 | Plus |
CG12118-RA | 855 | CG12118-PA | 1..855 | 17..871 | 4260 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:00:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12118-RB | 1260 | CG12118-RB | 237..1091 | 17..871 | 4260 | 99.9 | Plus |
CG12118-RA | 1277 | CG12118-RA | 254..1108 | 17..871 | 4260 | 99.9 | Plus |
CG12106-RA | 1372 | CG12106-RA | 958..1262 | 871..567 | 1525 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:00:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9195551..9196102 | 568..17 | 2745 | 99.8 | Minus |
X | 23542271 | X | 9194919..9195223 | 871..567 | 1525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:00:48 has no hits.
BS09177.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:41:49 Download gff for
BS09177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12118-RB | 284..1141 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:41 Download gff for
BS09177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12118-RA | 254..1107 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:57:48 Download gff for
BS09177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12118-RB | 284..1137 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:53 Download gff for
BS09177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12118-RA | 254..1107 | 17..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:53 Download gff for
BS09177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9194920..9195221 | 569..870 | 100 | <- | Minus |
X | 9195551..9196102 | 17..568 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:41 Download gff for
BS09177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9088953..9089254 | 569..870 | 100 | <- | Minus |
arm_X | 9089584..9090135 | 17..568 | 99 | | Minus |
BS09177.pep Sequence
Translation from 16 to 870
> BS09177.pep
MSRSLSRVLGTIWAPSLSISHTVHRGSNRLNDLLSTKVTNTAIIPVARYS
KRNGPPSDAGGYFKTVKSRDLDDDDELNSLESEPNWELTAERGNRFYLPN
GIGPAWQGDSTTVGLLEPLGHLVNFHKGPNTDKSRLEFTCCKCPLLIRVP
LLEIFPVPVVAQQCINITMLVLSHEGDIEMGAAKFVLAAREMCDRLLSYG
YWADFMNPFSGRPFFLPREGANLYRLDSRFRGLNMRLSEQNRCTVISAEK
NDSTRFSGTIYSTAPNHYGQLMKLLVPPPHKVAH*
BS09177.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12118-PB | 284 | CG12118-PB | 1..284 | 1..284 | 1510 | 100 | Plus |
CG12118-PA | 284 | CG12118-PA | 1..284 | 1..284 | 1510 | 100 | Plus |