Clone Sequence Records
BS09179.3prime Sequence
926 bp (824 high quality bases) assembled on 2006-01-24
> BS09179.3prime
ATGGTCTAGAAAGCTTTTATCTAAGCAGAGCCAGCAGTAGAATGCCCATC
AGACTCCAACTGACAGCACCGCTAGCACCACTTGTCCTGGCTTCCGCCGG
CAGCTGAGCCATGGCCACCAGCTGCTGCTCCTCATCCAGCTTGGGTCTGT
AGCTCCAATCGATGGTGTTTGTCTTGCAGAGCTGGGCGAATACTCTCGCC
GAGATCTTGGGCGTTCTGGTGCGTTGCGGTGAGTTGAAGTCCACATGATA
GAGACCGAATTTCTCCGAGAAGCCTGCCTTCCACTCATAGCTGTCCATCA
GACTCCAGGCGATGTAGCCACTGATATTCGCTCCATCCTCCATGGCATCC
AGAACCGCCGACAGATAGAGATTGTAGTAGTCCACGCGGGCATAGTCCTC
CAGACCACCGCGATCACTGACTCCGTTCTCCGTAACGATTATCTCGGGCG
CATTGTACTCCCGGTGTATCCACATCAACAGATTGTACATTCCCTTGGGA
TAGACCTTGAGCCAAACGGATCCGGAACCGGGCCAATCGACGCCCTCCTG
GCTCTCGACCACGCCCATGTCGTGATTAAAGGATGGAACTGGAAACTTGC
CGGTATTATTGTGACCATTGGAGGTGACCAGGTTGCTGGTATAGGAATTG
ATGCCGAAGAAGTCGGAGGTGCCGCGTATGCGATGAATCTCCTCAGTGGT
GAACTCAGGCAGTCTGGATCGTGCTCCGAAACCCTGCTCCTTGCTCAAGT
TCCGAATGCGCTCGATCATCACCTTGGGATAGTTACCGTGCTTGGAAAAG
ATGGGATGACCGAACCAGCCTACATAGAACTGCATGGCTCGCTCGGAGGC
CTCACGATCCTCGGCGGGAGTGGGATCCCTGGGCTCTGGCACGACGTATC
CAGTGTGATGCCCATGCGTCCACCTT
BS09179.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9701-PA | 1626 | CG9701-RA | 776..1626 | 867..17 | 4255 | 100 | Minus |
CG9701-PA | 1626 | CG9701-RA | 716..752 | 926..890 | 185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:45:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9701-RA | 2005 | CG9701-RA | 930..1840 | 926..17 | 4485 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:45:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16738709..16739199 | 507..17 | 2455 | 100 | Minus |
3L | 28110227 | 3L | 16737697..16738120 | 926..504 | 2025 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:45:28 has no hits.
BS09179.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:01:46 Download gff for
BS09179.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9701-PA | 716..1626 | 17..926 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:09:07 Download gff for
BS09179.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9701-PA | 716..1626 | 17..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:14:55 Download gff for
BS09179.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9701-RA | 930..1840 | 17..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:04:53 Download gff for
BS09179.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9701-RA | 930..1840 | 17..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:04:53 Download gff for
BS09179.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16737697..16738118 | 506..926 | 99 | -> | Minus |
3L | 16738711..16739199 | 17..505 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:14:55 Download gff for
BS09179.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16730797..16731218 | 506..926 | 99 | -> | Minus |
arm_3L | 16731811..16732299 | 17..505 | 100 | | Minus |
BS09179.5prime Sequence
904 bp (880 high quality bases) assembled on 2006-01-24
> BS09179.5prime
GAAGTTATCAGTCGACATGATGCAAATAATACTGCCTCTTTTTGTGCTGA
CTGCCTCATGTCTTGGCAGTCCGGTGAGCCAAACCCGTCGATTCCCCAAC
GACTTTCTCTGGGGCGTTGGATCATCTTCATACCAAATCGAAGGCGGCTG
GAACGCGGATGACAAGGGGGAGTCGATCTGGGACTTTCTCACCCACACTC
ATCCCGAGAAAATAGTCGATCGATCCAATGGCGATGTCTCGGCGGACAGC
TATCATCAGTGGAAGCGCGATGTGCAAATGGTCAAGGAGCTGCACGTGGG
CACCTATCGCTTCTCCCTGTCCTGGCCACGAATTATGCCCGGTGGCTATA
TGAACCACGTCAGTACAGCCGGCATTAAGTACTATTCCAACCTGATCGAC
GAACTGCTGCGGTACAACATCACTCCGATGGTGACGATCTATCACTGGGA
ATTGCCGCAGAAGTTGCAGGAGCTGGGTGGCTGGACCAATCCGGAGATAA
TTCCGCTTTTCAAGGACTATGCTCGCCTGGTGCTGGAAATGTACGGAGAT
CGGGTGAAGATCTGGACCACCGTCAATGAGCCGTGGCATGTGTGTGAGCA
CGGTTACGGAGTGGATTATATGGCACCTTCGTACAACTATCCAGGCATTC
CCGCCTACCTCTGTGGTCACAATCTGCTGAAGGCTCACGCCGAGGTGGTG
CACATGTACCGGGAGCTCTTCCAGCCGCGTCAAGGTGGACGCATGGGCAT
CACACTGGATACGTCGTGGCCAGAGCCCAGGGATCCCAACTCCGCCGAGG
ATCGTGAGGCCTCCGAGCGAGCCATGCAGTTCTATGTAGGCTGGTTCGGT
CATCCCATCTTTTCAAGCACGGTAACTATCCCAAGGTGATGATCGAGCGC
ATTC
BS09179.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9701-PA | 1626 | CG9701-RA | 1..848 | 17..864 | 4240 | 100 | Plus |
CG9701-PA | 1626 | CG9701-RA | 849..889 | 864..904 | 205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:35:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9701-RA | 2005 | CG9701-RA | 213..1103 | 15..904 | 4430 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:35:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16737222..16737870 | 257..904 | 3195 | 99.8 | Plus |
3L | 28110227 | 3L | 16734422..16734623 | 58..259 | 1010 | 100 | Plus |
3L | 28110227 | 3L | 16733758..16733800 | 15..57 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:35:05 has no hits.
BS09179.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:01:47 Download gff for
BS09179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9701-PA | 1..889 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:09:08 Download gff for
BS09179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9701-PA | 1..889 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:25:36 Download gff for
BS09179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9701-RA | 213..1103 | 15..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:44:36 Download gff for
BS09179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9701-RA | 213..1103 | 15..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:44:36 Download gff for
BS09179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16734422..16734623 | 58..259 | 100 | -> | Plus |
3L | 16733758..16733800 | 15..57 | 100 | -> | Plus |
3L | 16737225..16737870 | 260..904 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:25:36 Download gff for
BS09179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16726858..16726900 | 15..57 | 100 | -> | Plus |
arm_3L | 16727522..16727723 | 58..259 | 100 | -> | Plus |
arm_3L | 16730325..16730970 | 260..904 | 99 | | Plus |
BS09179.complete Sequence
1658 bp (1658 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636370
> BS09179.complete
GAAGTTATCAGTCGACATGATGCAAATAATACTGCCTCTTTTTGTGCTGA
CTGCCTCATGTCTTGGCAGTCCGGTGAGCCAAACCCGTCGATTCCCCAAC
GACTTTCTCTGGGGCGTTGGATCATCTTCATACCAAATCGAAGGCGGCTG
GAACGCGGATGACAAGGGGGAGTCGATCTGGGACTTTCTCACCCACACTC
ATCCCGAGAAAATAGTCGATCGATCCAATGGCGATGTCTCGGCGGACAGC
TATCATCAGTGGAAGCGCGATGTGCAAATGGTCAAGGAGCTGCACGTGGG
CACCTATCGCTTCTCCCTGTCCTGGCCACGAATTATGCCCGGTGGCTATA
TGAACCACGTCAGTACAGCCGGCATTAAGTACTATTCCAACCTGATCGAC
GAACTGCTGCGGTACAACATCACTCCGATGGTGACGATCTATCACTGGGA
ATTGCCGCAGAAGTTGCAGGAGCTGGGTGGCTGGACCAATCCGGAGATAA
TTCCGCTTTTCAAGGACTATGCTCGCCTGGTGCTGGAAATGTACGGAGAT
CGGGTGAAGATCTGGACCACCGTCAATGAGCCGTGGCATGTGTGTGAGCA
CGGTTACGGAGTGGATTATATGGCACCTTCGTACAACTATCCAGGCATTC
CCGCCTACCTCTGTGGTCACAATCTGCTGAAGGCTCACGCCGAGGTGGTG
CACATGTACCGGGAGCTCTTCCAGCCGCGTCAAGGTGGACGCATGGGCAT
CACACTGGATACGTCGTGGCCAGAGCCCAGGGATCCCAACTCCGCCGAGG
ATCGTGAGGCCTCCGAGCGAGCCATGCAGTTCTATGTAGGCTGGTTCGGT
CATCCCATCTTTTCCAAGCACGGTAACTATCCCAAGGTGATGATCGAGCG
CATTCGGAACTTGAGCAAGGAGCAGGGTTTCGGAGCACGATCCAGACTGC
CTGAGTTCACCACTGAGGAGATTCATCGCATACGCGGCACCTCCGACTTC
TTCGGCATCAATTCCTATACCAGCAACCTGGTCACCTCCAATGGTCACAA
TAATACCGGCAAGTTTCCAGTTCCATCCTTTAATCACGACATGGGCGTGG
TCGAGAGCCAGGAGGGCGTCGATTGGCCCGGTTCCGGATCCGTTTGGCTC
AAGGTCTATCCCAAGGGAATGTACAATCTGTTGATGTGGATACACCGGGA
GTACAATGCGCCCGAGATAATCGTTACGGAGAACGGAGTCAGTGATCGCG
GTGGTCTGGAGGACTATGCCCGCGTGGACTACTACAATCTCTATCTGTCG
GCGGTTCTGGATGCCATGGAGGATGGAGCGAATATCAGTGGCTACATCGC
CTGGAGTCTGATGGACAGCTATGAGTGGAAGGCAGGCTTCTCGGAGAAAT
TCGGTCTCTATCATGTGGACTTCAACTCACCGCAACGCACCAGAACGCCC
AAGATCTCGGCGAGAGTATTCGCCCAGCTCTGCAAGACAAACACCATCGA
TTGGAGCTACAGACCCAAGCTGGATGAGGAGCAGCAGCTGGTGGCCATGG
CTCAGCTGCCGGCGGAAGCCAGGACAAGTGGTGCTAGCGGTGCTGTCAGT
TGGAGTCTGATGGGCATTCTACTGCTGGCTCTGCTTAGATAAAAGCTTTC
TAGACCAT
BS09179.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:32:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9701-RA | 1626 | CG9701-PA | 1..1626 | 17..1642 | 8130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:32:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9701-RA | 2005 | CG9701-RA | 213..1840 | 15..1642 | 8140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:32:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16737222..16738120 | 257..1155 | 4495 | 100 | Plus |
3L | 28110227 | 3L | 16738709..16739199 | 1152..1642 | 2455 | 100 | Plus |
3L | 28110227 | 3L | 16734422..16734623 | 58..259 | 1010 | 100 | Plus |
3L | 28110227 | 3L | 16733758..16733800 | 15..57 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:32:42 has no hits.
BS09179.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:58 Download gff for
BS09179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9701-RA | 1..1626 | 17..1642 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:32 Download gff for
BS09179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9701-RA | 185..1812 | 15..1642 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:51:41 Download gff for
BS09179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9701-RA | 215..1838 | 17..1640 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:58 Download gff for
BS09179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9701-RA | 185..1812 | 15..1642 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:55 Download gff for
BS09179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9701-RA | 215..1838 | 17..1640 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:55 Download gff for
BS09179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16733760..16733800 | 17..57 | 100 | -> | Plus |
3L | 16734422..16734623 | 58..259 | 100 | -> | Plus |
3L | 16737225..16738118 | 260..1153 | 100 | -> | Plus |
3L | 16738711..16739197 | 1154..1640 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:51:41 Download gff for
BS09179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16727522..16727723 | 58..259 | 100 | -> | Plus |
arm_3L | 16726860..16726900 | 17..57 | 100 | -> | Plus |
arm_3L | 16730325..16731218 | 260..1153 | 100 | -> | Plus |
arm_3L | 16731811..16732297 | 1154..1640 | 100 | | Plus |
BS09179.pep Sequence
Translation from 16 to 1641
> BS09179.pep
MMQIILPLFVLTASCLGSPVSQTRRFPNDFLWGVGSSSYQIEGGWNADDK
GESIWDFLTHTHPEKIVDRSNGDVSADSYHQWKRDVQMVKELHVGTYRFS
LSWPRIMPGGYMNHVSTAGIKYYSNLIDELLRYNITPMVTIYHWELPQKL
QELGGWTNPEIIPLFKDYARLVLEMYGDRVKIWTTVNEPWHVCEHGYGVD
YMAPSYNYPGIPAYLCGHNLLKAHAEVVHMYRELFQPRQGGRMGITLDTS
WPEPRDPNSAEDREASERAMQFYVGWFGHPIFSKHGNYPKVMIERIRNLS
KEQGFGARSRLPEFTTEEIHRIRGTSDFFGINSYTSNLVTSNGHNNTGKF
PVPSFNHDMGVVESQEGVDWPGSGSVWLKVYPKGMYNLLMWIHREYNAPE
IIVTENGVSDRGGLEDYARVDYYNLYLSAVLDAMEDGANISGYIAWSLMD
SYEWKAGFSEKFGLYHVDFNSPQRTRTPKISARVFAQLCKTNTIDWSYRP
KLDEEQQLVAMAQLPAEARTSGASGAVSWSLMGILLLALLR*
BS09179.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:42:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9701-PA | 541 | CG9701-PA | 1..541 | 1..541 | 2943 | 100 | Plus |