Clone BS09179 Report

Search the DGRC for BS09179

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:91
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG9701-RA
Protein status:BS09179.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09179.3prime Sequence

926 bp (824 high quality bases) assembled on 2006-01-24

> BS09179.3prime
ATGGTCTAGAAAGCTTTTATCTAAGCAGAGCCAGCAGTAGAATGCCCATC
AGACTCCAACTGACAGCACCGCTAGCACCACTTGTCCTGGCTTCCGCCGG
CAGCTGAGCCATGGCCACCAGCTGCTGCTCCTCATCCAGCTTGGGTCTGT
AGCTCCAATCGATGGTGTTTGTCTTGCAGAGCTGGGCGAATACTCTCGCC
GAGATCTTGGGCGTTCTGGTGCGTTGCGGTGAGTTGAAGTCCACATGATA
GAGACCGAATTTCTCCGAGAAGCCTGCCTTCCACTCATAGCTGTCCATCA
GACTCCAGGCGATGTAGCCACTGATATTCGCTCCATCCTCCATGGCATCC
AGAACCGCCGACAGATAGAGATTGTAGTAGTCCACGCGGGCATAGTCCTC
CAGACCACCGCGATCACTGACTCCGTTCTCCGTAACGATTATCTCGGGCG
CATTGTACTCCCGGTGTATCCACATCAACAGATTGTACATTCCCTTGGGA
TAGACCTTGAGCCAAACGGATCCGGAACCGGGCCAATCGACGCCCTCCTG
GCTCTCGACCACGCCCATGTCGTGATTAAAGGATGGAACTGGAAACTTGC
CGGTATTATTGTGACCATTGGAGGTGACCAGGTTGCTGGTATAGGAATTG
ATGCCGAAGAAGTCGGAGGTGCCGCGTATGCGATGAATCTCCTCAGTGGT
GAACTCAGGCAGTCTGGATCGTGCTCCGAAACCCTGCTCCTTGCTCAAGT
TCCGAATGCGCTCGATCATCACCTTGGGATAGTTACCGTGCTTGGAAAAG
ATGGGATGACCGAACCAGCCTACATAGAACTGCATGGCTCGCTCGGAGGC
CTCACGATCCTCGGCGGGAGTGGGATCCCTGGGCTCTGGCACGACGTATC
CAGTGTGATGCCCATGCGTCCACCTT

BS09179.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9701-PA 1626 CG9701-RA 776..1626 867..17 4255 100 Minus
CG9701-PA 1626 CG9701-RA 716..752 926..890 185 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:45:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9701-RA 2005 CG9701-RA 930..1840 926..17 4485 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16738709..16739199 507..17 2455 100 Minus
3L 28110227 3L 16737697..16738120 926..504 2025 99.1 Minus
Blast to na_te.dros performed on 2015-02-10 17:45:28 has no hits.

BS09179.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:01:46 Download gff for BS09179.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9701-PA 716..1626 17..926 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:09:07 Download gff for BS09179.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9701-PA 716..1626 17..926 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:14:55 Download gff for BS09179.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9701-RA 930..1840 17..926 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:04:53 Download gff for BS09179.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9701-RA 930..1840 17..926 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:04:53 Download gff for BS09179.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16737697..16738118 506..926 99 -> Minus
3L 16738711..16739199 17..505 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:14:55 Download gff for BS09179.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16730797..16731218 506..926 99 -> Minus
arm_3L 16731811..16732299 17..505 100   Minus

BS09179.5prime Sequence

904 bp (880 high quality bases) assembled on 2006-01-24

> BS09179.5prime
GAAGTTATCAGTCGACATGATGCAAATAATACTGCCTCTTTTTGTGCTGA
CTGCCTCATGTCTTGGCAGTCCGGTGAGCCAAACCCGTCGATTCCCCAAC
GACTTTCTCTGGGGCGTTGGATCATCTTCATACCAAATCGAAGGCGGCTG
GAACGCGGATGACAAGGGGGAGTCGATCTGGGACTTTCTCACCCACACTC
ATCCCGAGAAAATAGTCGATCGATCCAATGGCGATGTCTCGGCGGACAGC
TATCATCAGTGGAAGCGCGATGTGCAAATGGTCAAGGAGCTGCACGTGGG
CACCTATCGCTTCTCCCTGTCCTGGCCACGAATTATGCCCGGTGGCTATA
TGAACCACGTCAGTACAGCCGGCATTAAGTACTATTCCAACCTGATCGAC
GAACTGCTGCGGTACAACATCACTCCGATGGTGACGATCTATCACTGGGA
ATTGCCGCAGAAGTTGCAGGAGCTGGGTGGCTGGACCAATCCGGAGATAA
TTCCGCTTTTCAAGGACTATGCTCGCCTGGTGCTGGAAATGTACGGAGAT
CGGGTGAAGATCTGGACCACCGTCAATGAGCCGTGGCATGTGTGTGAGCA
CGGTTACGGAGTGGATTATATGGCACCTTCGTACAACTATCCAGGCATTC
CCGCCTACCTCTGTGGTCACAATCTGCTGAAGGCTCACGCCGAGGTGGTG
CACATGTACCGGGAGCTCTTCCAGCCGCGTCAAGGTGGACGCATGGGCAT
CACACTGGATACGTCGTGGCCAGAGCCCAGGGATCCCAACTCCGCCGAGG
ATCGTGAGGCCTCCGAGCGAGCCATGCAGTTCTATGTAGGCTGGTTCGGT
CATCCCATCTTTTCAAGCACGGTAACTATCCCAAGGTGATGATCGAGCGC
ATTC

BS09179.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9701-PA 1626 CG9701-RA 1..848 17..864 4240 100 Plus
CG9701-PA 1626 CG9701-RA 849..889 864..904 205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG9701-RA 2005 CG9701-RA 213..1103 15..904 4430 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16737222..16737870 257..904 3195 99.8 Plus
3L 28110227 3L 16734422..16734623 58..259 1010 100 Plus
3L 28110227 3L 16733758..16733800 15..57 215 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:35:05 has no hits.

BS09179.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:01:47 Download gff for BS09179.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9701-PA 1..889 17..904 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:09:08 Download gff for BS09179.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9701-PA 1..889 17..904 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:25:36 Download gff for BS09179.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9701-RA 213..1103 15..904 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:44:36 Download gff for BS09179.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9701-RA 213..1103 15..904 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:44:36 Download gff for BS09179.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16734422..16734623 58..259 100 -> Plus
3L 16733758..16733800 15..57 100 -> Plus
3L 16737225..16737870 260..904 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:25:36 Download gff for BS09179.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16726858..16726900 15..57 100 -> Plus
arm_3L 16727522..16727723 58..259 100 -> Plus
arm_3L 16730325..16730970 260..904 99   Plus

BS09179.complete Sequence

1658 bp (1658 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636370

> BS09179.complete
GAAGTTATCAGTCGACATGATGCAAATAATACTGCCTCTTTTTGTGCTGA
CTGCCTCATGTCTTGGCAGTCCGGTGAGCCAAACCCGTCGATTCCCCAAC
GACTTTCTCTGGGGCGTTGGATCATCTTCATACCAAATCGAAGGCGGCTG
GAACGCGGATGACAAGGGGGAGTCGATCTGGGACTTTCTCACCCACACTC
ATCCCGAGAAAATAGTCGATCGATCCAATGGCGATGTCTCGGCGGACAGC
TATCATCAGTGGAAGCGCGATGTGCAAATGGTCAAGGAGCTGCACGTGGG
CACCTATCGCTTCTCCCTGTCCTGGCCACGAATTATGCCCGGTGGCTATA
TGAACCACGTCAGTACAGCCGGCATTAAGTACTATTCCAACCTGATCGAC
GAACTGCTGCGGTACAACATCACTCCGATGGTGACGATCTATCACTGGGA
ATTGCCGCAGAAGTTGCAGGAGCTGGGTGGCTGGACCAATCCGGAGATAA
TTCCGCTTTTCAAGGACTATGCTCGCCTGGTGCTGGAAATGTACGGAGAT
CGGGTGAAGATCTGGACCACCGTCAATGAGCCGTGGCATGTGTGTGAGCA
CGGTTACGGAGTGGATTATATGGCACCTTCGTACAACTATCCAGGCATTC
CCGCCTACCTCTGTGGTCACAATCTGCTGAAGGCTCACGCCGAGGTGGTG
CACATGTACCGGGAGCTCTTCCAGCCGCGTCAAGGTGGACGCATGGGCAT
CACACTGGATACGTCGTGGCCAGAGCCCAGGGATCCCAACTCCGCCGAGG
ATCGTGAGGCCTCCGAGCGAGCCATGCAGTTCTATGTAGGCTGGTTCGGT
CATCCCATCTTTTCCAAGCACGGTAACTATCCCAAGGTGATGATCGAGCG
CATTCGGAACTTGAGCAAGGAGCAGGGTTTCGGAGCACGATCCAGACTGC
CTGAGTTCACCACTGAGGAGATTCATCGCATACGCGGCACCTCCGACTTC
TTCGGCATCAATTCCTATACCAGCAACCTGGTCACCTCCAATGGTCACAA
TAATACCGGCAAGTTTCCAGTTCCATCCTTTAATCACGACATGGGCGTGG
TCGAGAGCCAGGAGGGCGTCGATTGGCCCGGTTCCGGATCCGTTTGGCTC
AAGGTCTATCCCAAGGGAATGTACAATCTGTTGATGTGGATACACCGGGA
GTACAATGCGCCCGAGATAATCGTTACGGAGAACGGAGTCAGTGATCGCG
GTGGTCTGGAGGACTATGCCCGCGTGGACTACTACAATCTCTATCTGTCG
GCGGTTCTGGATGCCATGGAGGATGGAGCGAATATCAGTGGCTACATCGC
CTGGAGTCTGATGGACAGCTATGAGTGGAAGGCAGGCTTCTCGGAGAAAT
TCGGTCTCTATCATGTGGACTTCAACTCACCGCAACGCACCAGAACGCCC
AAGATCTCGGCGAGAGTATTCGCCCAGCTCTGCAAGACAAACACCATCGA
TTGGAGCTACAGACCCAAGCTGGATGAGGAGCAGCAGCTGGTGGCCATGG
CTCAGCTGCCGGCGGAAGCCAGGACAAGTGGTGCTAGCGGTGCTGTCAGT
TGGAGTCTGATGGGCATTCTACTGCTGGCTCTGCTTAGATAAAAGCTTTC
TAGACCAT

BS09179.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG9701-RA 1626 CG9701-PA 1..1626 17..1642 8130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG9701-RA 2005 CG9701-RA 213..1840 15..1642 8140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16737222..16738120 257..1155 4495 100 Plus
3L 28110227 3L 16738709..16739199 1152..1642 2455 100 Plus
3L 28110227 3L 16734422..16734623 58..259 1010 100 Plus
3L 28110227 3L 16733758..16733800 15..57 215 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:32:42 has no hits.

BS09179.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:58 Download gff for BS09179.complete
Subject Subject Range Query Range Percent Splice Strand
CG9701-RA 1..1626 17..1642 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:32 Download gff for BS09179.complete
Subject Subject Range Query Range Percent Splice Strand
CG9701-RA 185..1812 15..1642 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:51:41 Download gff for BS09179.complete
Subject Subject Range Query Range Percent Splice Strand
CG9701-RA 215..1838 17..1640 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:58 Download gff for BS09179.complete
Subject Subject Range Query Range Percent Splice Strand
CG9701-RA 185..1812 15..1642 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:55 Download gff for BS09179.complete
Subject Subject Range Query Range Percent Splice Strand
CG9701-RA 215..1838 17..1640 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:55 Download gff for BS09179.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16733760..16733800 17..57 100 -> Plus
3L 16734422..16734623 58..259 100 -> Plus
3L 16737225..16738118 260..1153 100 -> Plus
3L 16738711..16739197 1154..1640 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:51:41 Download gff for BS09179.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16727522..16727723 58..259 100 -> Plus
arm_3L 16726860..16726900 17..57 100 -> Plus
arm_3L 16730325..16731218 260..1153 100 -> Plus
arm_3L 16731811..16732297 1154..1640 100   Plus

BS09179.pep Sequence

Translation from 16 to 1641

> BS09179.pep
MMQIILPLFVLTASCLGSPVSQTRRFPNDFLWGVGSSSYQIEGGWNADDK
GESIWDFLTHTHPEKIVDRSNGDVSADSYHQWKRDVQMVKELHVGTYRFS
LSWPRIMPGGYMNHVSTAGIKYYSNLIDELLRYNITPMVTIYHWELPQKL
QELGGWTNPEIIPLFKDYARLVLEMYGDRVKIWTTVNEPWHVCEHGYGVD
YMAPSYNYPGIPAYLCGHNLLKAHAEVVHMYRELFQPRQGGRMGITLDTS
WPEPRDPNSAEDREASERAMQFYVGWFGHPIFSKHGNYPKVMIERIRNLS
KEQGFGARSRLPEFTTEEIHRIRGTSDFFGINSYTSNLVTSNGHNNTGKF
PVPSFNHDMGVVESQEGVDWPGSGSVWLKVYPKGMYNLLMWIHREYNAPE
IIVTENGVSDRGGLEDYARVDYYNLYLSAVLDAMEDGANISGYIAWSLMD
SYEWKAGFSEKFGLYHVDFNSPQRTRTPKISARVFAQLCKTNTIDWSYRP
KLDEEQQLVAMAQLPAEARTSGASGAVSWSLMGILLLALLR*

BS09179.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG9701-PA 541 CG9701-PA 1..541 1..541 2943 100 Plus