Clone BS09183 Report

Search the DGRC for BS09183

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:91
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptCG8083-RA
Protein status:BS09183.pep: full length peptide match
Sequenced Size:1844

Clone Sequence Records

BS09183.3prime Sequence

899 bp (841 high quality bases) assembled on 2006-01-24

> BS09183.3prime
ATGGTCTAGAAAGCTTCTAAAACTGAGTAACATTCTTTCGACCCAACTTC
TCGAATATCCTGTTGTAGTTCGCCCGCTCGTCATCTTCTTGTATAAGGAT
GCCTGCAAAGCTGGCGGATACGAAACAGACTATGCTGCCCACCACAAACG
CTCGGAAAGCCACTGCTGTAATGGTGGAGCGACGATGTGGTGCCATAGCA
CTGAGGGATCCGATAAGGATGCCCAGGGAACTGGGATTGGCAAAGCCGCA
GATGGCGAATGTGGCGATTCCAGCGCTGCGGGCAGTGATATCATTATTTT
CGATGTATTGACCCAGACGCTCATAGGCCACAAACTCATTGATAATGGTT
TTGGTGGCCACCACCTTGGCGATGATATCGCAATCCTCTTTTGGCACCCC
CATGGCCCAGACCAGCGGGATGAACAGCTTAGAGAATATCCACTCGAAGT
CGATTTGCTCGAGACCCACCAGGTAACCAAACCAACTGACCAGACCATTT
AGGAAGGCGATGAAGGCGACGAAGGCGACTATGTTAGCGATAATGCCCAG
AACAATGGGCACGGCGTTGCTGGCACCACTGGACGCTGCGTCCAGCAGCG
AAGAGTCCTGTGATTTTTCCAGTTCAATTGAATCGGATGAGGTCTGGCTC
TCCTCCGTTTCGGGCATGTAAAGCTTAGAGATGGCCAGAGTAGCGGGAGC
TGCCATCACCGAGGAGGTGATCAAGTGCGCGGCCGATGCACCGAATGACA
AGTAGGCCGCCAACACGGTTCCGGACACGGTCGCAAATCCGGACACCATG
ATGCTGTGGATTTCGCTCTTGGTCAGCTTGTTGATATACGGCCGAATGAG
CAGCGGGCTCTCGGACATGCCAAGGAAGATGTTGGCTGCGGCCGTCACG

BS09183.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG8083-PA 1812 CG8083-RA 930..1812 899..17 4415 100 Minus
CG8083-PB 1809 CG8083-RB 927..1809 899..17 4415 100 Minus
CG8083-PC 1812 CG8083-RC 930..1812 899..17 4415 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG8083-RC 2085 CG8083-RC 1121..2003 899..17 4415 100 Minus
CG8083-RB 2082 CG8083-RB 1118..2000 899..17 4415 100 Minus
CG8083-RA 2115 CG8083-RA 1151..2033 899..17 4415 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:28:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9081570..9081898 611..283 1645 100 Minus
2R 25286936 2R 9081218..9081505 899..612 1440 100 Minus
2R 25286936 2R 9081965..9082146 283..102 910 100 Minus
2R 25286936 2R 9082205..9082292 104..17 440 100 Minus
Blast to na_te.dros performed on 2015-01-31 14:28:25 has no hits.

BS09183.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:01:55 Download gff for BS09183.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8083-PB 927..1809 17..899 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:09:18 Download gff for BS09183.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8083-PC 930..1812 17..899 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:06:37 Download gff for BS09183.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8083-RA 1151..2039 11..899 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:29:31 Download gff for BS09183.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8083-RA 1151..2039 11..899 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:29:31 Download gff for BS09183.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9081965..9082145 103..283 100 -> Minus
2R 9082207..9082298 11..102 96   Minus
2R 9081218..9081505 612..899 100 -> Minus
2R 9081570..9081897 284..611 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:06:37 Download gff for BS09183.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4968723..4969010 612..899 100 -> Minus
arm_2R 4969075..4969402 284..611 100 -> Minus
arm_2R 4969470..4969650 103..283 100 -> Minus
arm_2R 4969712..4969803 11..102 96   Minus

BS09183.5prime Sequence

926 bp (879 high quality bases) assembled on 2006-01-24

> BS09183.5prime
GAAGTTATCAGTCGTCATGTCAGCCGAATCATCAAAAGGAGCTATTAACA
ATGGCTACGAACTGGATCATAAGGAGTTGGACATCCGTGACTCGGAAGAA
TTCACGGAACATCCACTGGATGACACCAGCGAGGTGGCAAATAAAAAGGG
ATATTTTGAAAAGAATCCAAAAGTAGCGCGACTGGTGAGGATCTCGATTT
ATGTACTGCTGCATCTGTGTGTTGTGGGGTACTTCTCATATGCAACCTAC
CACTATCACGACATAACCAACTATGAGTGCTATTGGAAAGACAACCCATT
GTGCGGCATCAACTTCTGCACGGGCTATGGAATGCTCCTGCTCCTCCTGG
GATTCATCTATTTGGGTCTATTCTACTACTATGTCTTTAAGCCGATGGTG
GGGCACAGCCTGCACAGGAACTATATCAAACCATTTTCAAAGAAATGGCA
CAACTTCAGCAGAACCAGAGTTGTGTCATTGGCCAGCATCGCATTGCTCC
TGGCCCTTTTGGCCATCTTTGTGTACTTCGAGTGCCGGGACGAGACCCAA
AAACTGGTGTCCCTGGTGGCACCCTGCTTCTTCATCCTGTGCGGCTACGT
TTTCTCCACGAATCGAAGAGCCATTAATTGGCGCATAGTCATCACGGGAA
TCACGTGCCAGTTTCTGCTCGGCATTTTCTGCATCCGCTGGGAGGTGGGA
CGAAAAATCTTCGAGTGCTTGGGCAACAAGGTGGCCACGTTTCTGGGCTA
TGCCACCGATGGAGCCGAGTTCGTGTTCGGCGACTTCCTGGTGAACAACA
ATGTGTTCGCCTTCGCCATCCTGCCGGTTATCTTCTTCTTCAGCTTCTTC
ATCTCCATCCTGTACTACATGGGTACAATGCAGTGGGTGGTGATCAAACT
GGGCTGGATCCTGCAGCAGATCTGGG

BS09183.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG8083-PA 1812 CG8083-RA 1..905 17..921 4525 100 Plus
CG8083-PC 1812 CG8083-RC 1..905 17..921 4525 100 Plus
CG8083-PB 1809 CG8083-RB 55..902 74..921 4240 100 Plus
CG8083-PB 1809 CG8083-RB 1..54 17..70 270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG8083-RC 2085 CG8083-RC 192..1102 17..926 4530 99.9 Plus
CG8083-RA 2115 CG8083-RA 222..1132 17..926 4530 99.9 Plus
CG8083-RB 2082 CG8083-RB 192..1099 17..926 4475 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:58:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9080737..9081193 465..921 2285 100 Plus
2R 25286936 2R 9080477..9080678 267..468 1010 100 Plus
2R 25286936 2R 9080228..9080423 71..266 980 100 Plus
2R 25286936 2R 9080116..9080169 17..70 270 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:58:33 has no hits.

BS09183.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:01:56 Download gff for BS09183.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8083-PA 1..911 17..926 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:09:19 Download gff for BS09183.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8083-PC 1..911 17..926 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:43:57 Download gff for BS09183.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8083-RA 222..1132 17..926 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:28:54 Download gff for BS09183.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8083-RA 222..1132 17..926 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:28:54 Download gff for BS09183.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9080116..9080169 17..70 100 -> Plus
2R 9080228..9080423 71..266 100 -> Plus
2R 9080477..9080678 267..468 100 -> Plus
2R 9080741..9081199 469..926 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:43:57 Download gff for BS09183.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4967621..4967674 17..70 100 -> Plus
arm_2R 4967733..4967928 71..266 100 -> Plus
arm_2R 4967982..4968183 267..468 100 -> Plus
arm_2R 4968246..4968704 469..926 99   Plus

BS09183.complete Sequence

1844 bp assembled on 2008-08-15

GenBank Submission: FJ636371

> BS09183.complete
GAAGTTATCAGTCGTCATGTCAGCCGAATCATCAAAAGGAGCTATTAACA
ATGGCTACGAACTGGATCATAAGGAGTTGGACATCCGTGACTCGGAAGAA
TTCACGGAACATCCACTGGATGACACCAGCGAGGTGGCAAATAAAAAGGG
ATATTTTGAAAAGAATCCAAAAGTAGCGCGACTGGTGAGGATCTCGATTT
ATGTACTGCTGCATCTGTGTGTTGTGGGGTACTTCTCATATGCAACCTAC
CACTATCACGACATAACCAACTATGAGTGCTATTGGAAAGACAACCCATT
GTGCGGCATCAACTTCTGCACGGGCTATGGAATGCTCCTGCTCCTCCTGG
GATTCATCTATTTGGGTCTATTCTACTACTATGTCTTTAAGCCGATGGTG
GGGCACAGCCTGCACAGGAACTATATCAAACCATTTTCAAAGAAATGGCA
CAACTTCAGCAGAACCAGAGTTGTGTCATTGGCCAGCATCGCATTGCTCC
TGGCCCTTTTGGCCATCTTTGTGTACTTCGAGTGCCGGGACGAGACCCAA
AAACTGGTGTCCCTGGTGGCACCCTGCTTCTTCATCCTGTGCGGCTACGT
TTTCTCCACGAATCGAAGAGCCATTAATTGGCGCATAGTCATCACGGGAA
TCACGTGCCAGTTTCTGCTCGGCATTTTCTGCATCCGCTGGGAGGTGGGA
CGAAAAATCTTCGAGTGCTTGGGCAACAAGGTGGCCACGTTTCTGGGCTA
TGCCACCGATGGAGCCGAGTTCGTGTTCGGCGACTTCCTGGTGAACAACA
ATGTGTTCGCCTTCGCCATCCTGCCGGTTATCTTCTTCTTCAGCTTCTTC
ATCTCCATCCTGTACTACATGGGTACAATGCAGTGGGTGGTGATCAAACT
GGGCTGGATCCTGCAGCAGATTCTGGGCACCACTGTTTGCGAAAGCGTGA
CGGCCGCAGCCAACATCTTCCTTGGCATGTCCGAGAGCCCGCTGCTCATT
CGGCCGTATATCAACAAGCTGACCAAGAGCGAAATCCACAGCATCATGGT
GTCCGGATTTGCGACCGTGTCCGGAACCGTGTTGGCGGCCTACTTGTCAT
TCGGTGCATCGGCCGCGCACTTGATCACCTCCTCGGTGATGGCAGCTCCC
GCTACTCTGGCCATCTCTAAGCTTTACATGCCCGAAACGGAGGAGAGCCA
GACCTCATCCGATTCAATTGAACTGGAAAAATCACAGGACTCTTCGCTGC
TGGACGCAGCGTCCAGTGGTGCCAGCAACGCCGTGCCCATTGTTCTGGGC
ATTATCGCTAACATAGTCGCCTTCGTCGCCTTCATCGCCTTCCTAAATGG
TCTGGTCAGTTGGTTTGGTTACCTGGTGGGTCTCGAGCAAATCGACTTCG
AGTGGATATTCTCTAAGCTGTTCATCCCGCTGGTCTGGGCCATGGGGGTG
CCAAAAGAGGATTGCGATATCATCGCCAAGGTGGTGGCCACCAAAACCAT
TATCAATGAGTTTGTGGCCTATGAGCGTCTGGGTCAATACATCGAAAATA
ATGATATCACTGCCCGCAGCGCTGGAATCGCCACATTCGCCATCTGCGGC
TTTGCCAATCCCAGTTCCCTGGGCATCCTTATCGGATCCCTCAGTGCTAT
GGCACCACATCGTCGCTCCACCATTACAGCAGTGGCTTTCCGAGCGTTTG
TGGTGGGCAGCATAGTCTGTTTCGTATCCGCCAGCTTTGCAGGCATCCTT
ATACAAGAAGATGACGAGCGGGCGAACTACAACAGGATATTCGAGAAGTT
GGGTCGAAAGAATGTTACTCAGTTTTAGAAGCTTTCTAGACCAT

BS09183.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:29:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8083-RC 1812 CG8083-PC 1..1812 17..1828 9060 100 Plus
CG8083-RA 1812 CG8083-PA 1..1812 17..1828 9060 100 Plus
CG8083-RB 1809 CG8083-PB 1..1809 17..1828 8980 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:29:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG8083-RC 2085 CG8083-RC 192..2003 17..1828 9060 100 Plus
CG8083-RA 2115 CG8083-RA 222..2033 17..1828 9060 100 Plus
CG8083-RB 2082 CG8083-RB 192..2000 17..1828 8980 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:29:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9080737..9081505 465..1233 3845 100 Plus
2R 25286936 2R 9081570..9081898 1234..1562 1645 100 Plus
2R 25286936 2R 9080477..9080678 267..468 1010 100 Plus
2R 25286936 2R 9080228..9080423 71..266 980 100 Plus
2R 25286936 2R 9081965..9082146 1562..1743 910 100 Plus
2R 25286936 2R 9082205..9082292 1741..1828 440 100 Plus
2R 25286936 2R 9080116..9080169 17..70 270 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:29:37 has no hits.

BS09183.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:54:44 Download gff for BS09183.complete
Subject Subject Range Query Range Percent Splice Strand
CG8083-RC 186..2003 17..1834 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:39 Download gff for BS09183.complete
Subject Subject Range Query Range Percent Splice Strand
CG8083-RA 222..2033 17..1828 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:56 Download gff for BS09183.complete
Subject Subject Range Query Range Percent Splice Strand
CG8083-RC 184..1995 17..1828 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:42 Download gff for BS09183.complete
Subject Subject Range Query Range Percent Splice Strand
CG8083-RA 222..2033 17..1828 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:42 Download gff for BS09183.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9080477..9080678 267..468 100 -> Plus
2R 9080228..9080423 71..266 100 -> Plus
2R 9080116..9080169 17..70 100 -> Plus
2R 9080741..9081505 469..1233 100 -> Plus
2R 9081570..9081897 1234..1561 100 -> Plus
2R 9081965..9082145 1562..1742 100 -> Plus
2R 9082207..9082292 1743..1828 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:39 Download gff for BS09183.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4967982..4968183 267..468 100 -> Plus
arm_2R 4969470..4969650 1562..1742 100 -> Plus
arm_2R 4969075..4969402 1234..1561 100 -> Plus
arm_2R 4969712..4969797 1743..1828 100   Plus
arm_2R 4967621..4967674 17..70 100 -> Plus
arm_2R 4967733..4967928 71..266 100 -> Plus
arm_2R 4968246..4969010 469..1233 100 -> Plus

BS09183.pep Sequence

Translation from 16 to 1827

> BS09183.pep
MSAESSKGAINNGYELDHKELDIRDSEEFTEHPLDDTSEVANKKGYFEKN
PKVARLVRISIYVLLHLCVVGYFSYATYHYHDITNYECYWKDNPLCGINF
CTGYGMLLLLLGFIYLGLFYYYVFKPMVGHSLHRNYIKPFSKKWHNFSRT
RVVSLASIALLLALLAIFVYFECRDETQKLVSLVAPCFFILCGYVFSTNR
RAINWRIVITGITCQFLLGIFCIRWEVGRKIFECLGNKVATFLGYATDGA
EFVFGDFLVNNNVFAFAILPVIFFFSFFISILYYMGTMQWVVIKLGWILQ
QILGTTVCESVTAAANIFLGMSESPLLIRPYINKLTKSEIHSIMVSGFAT
VSGTVLAAYLSFGASAAHLITSSVMAAPATLAISKLYMPETEESQTSSDS
IELEKSQDSSLLDAASSGASNAVPIVLGIIANIVAFVAFIAFLNGLVSWF
GYLVGLEQIDFEWIFSKLFIPLVWAMGVPKEDCDIIAKVVATKTIINEFV
AYERLGQYIENNDITARSAGIATFAICGFANPSSLGILIGSLSAMAPHRR
STITAVAFRAFVVGSIVCFVSASFAGILIQEDDERANYNRIFEKLGRKNV
TQF*

BS09183.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG8083-PC 603 CG8083-PC 1..603 1..603 3111 100 Plus
CG8083-PA 603 CG8083-PA 1..603 1..603 3111 100 Plus
CG8083-PB 602 CG8083-PB 1..602 1..603 3094 99.8 Plus
CNT1-PB 590 CG11778-PB 6..585 44..582 1398 49.5 Plus