Clone Sequence Records
BS09183.3prime Sequence
899 bp (841 high quality bases) assembled on 2006-01-24
> BS09183.3prime
ATGGTCTAGAAAGCTTCTAAAACTGAGTAACATTCTTTCGACCCAACTTC
TCGAATATCCTGTTGTAGTTCGCCCGCTCGTCATCTTCTTGTATAAGGAT
GCCTGCAAAGCTGGCGGATACGAAACAGACTATGCTGCCCACCACAAACG
CTCGGAAAGCCACTGCTGTAATGGTGGAGCGACGATGTGGTGCCATAGCA
CTGAGGGATCCGATAAGGATGCCCAGGGAACTGGGATTGGCAAAGCCGCA
GATGGCGAATGTGGCGATTCCAGCGCTGCGGGCAGTGATATCATTATTTT
CGATGTATTGACCCAGACGCTCATAGGCCACAAACTCATTGATAATGGTT
TTGGTGGCCACCACCTTGGCGATGATATCGCAATCCTCTTTTGGCACCCC
CATGGCCCAGACCAGCGGGATGAACAGCTTAGAGAATATCCACTCGAAGT
CGATTTGCTCGAGACCCACCAGGTAACCAAACCAACTGACCAGACCATTT
AGGAAGGCGATGAAGGCGACGAAGGCGACTATGTTAGCGATAATGCCCAG
AACAATGGGCACGGCGTTGCTGGCACCACTGGACGCTGCGTCCAGCAGCG
AAGAGTCCTGTGATTTTTCCAGTTCAATTGAATCGGATGAGGTCTGGCTC
TCCTCCGTTTCGGGCATGTAAAGCTTAGAGATGGCCAGAGTAGCGGGAGC
TGCCATCACCGAGGAGGTGATCAAGTGCGCGGCCGATGCACCGAATGACA
AGTAGGCCGCCAACACGGTTCCGGACACGGTCGCAAATCCGGACACCATG
ATGCTGTGGATTTCGCTCTTGGTCAGCTTGTTGATATACGGCCGAATGAG
CAGCGGGCTCTCGGACATGCCAAGGAAGATGTTGGCTGCGGCCGTCACG
BS09183.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8083-PA | 1812 | CG8083-RA | 930..1812 | 899..17 | 4415 | 100 | Minus |
CG8083-PB | 1809 | CG8083-RB | 927..1809 | 899..17 | 4415 | 100 | Minus |
CG8083-PC | 1812 | CG8083-RC | 930..1812 | 899..17 | 4415 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:28:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8083-RC | 2085 | CG8083-RC | 1121..2003 | 899..17 | 4415 | 100 | Minus |
CG8083-RB | 2082 | CG8083-RB | 1118..2000 | 899..17 | 4415 | 100 | Minus |
CG8083-RA | 2115 | CG8083-RA | 1151..2033 | 899..17 | 4415 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:28:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9081570..9081898 | 611..283 | 1645 | 100 | Minus |
2R | 25286936 | 2R | 9081218..9081505 | 899..612 | 1440 | 100 | Minus |
2R | 25286936 | 2R | 9081965..9082146 | 283..102 | 910 | 100 | Minus |
2R | 25286936 | 2R | 9082205..9082292 | 104..17 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 14:28:25 has no hits.
BS09183.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:01:55 Download gff for
BS09183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8083-PB | 927..1809 | 17..899 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:09:18 Download gff for
BS09183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8083-PC | 930..1812 | 17..899 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:06:37 Download gff for
BS09183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8083-RA | 1151..2039 | 11..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:29:31 Download gff for
BS09183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8083-RA | 1151..2039 | 11..899 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:29:31 Download gff for
BS09183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9081965..9082145 | 103..283 | 100 | -> | Minus |
2R | 9082207..9082298 | 11..102 | 96 | | Minus |
2R | 9081218..9081505 | 612..899 | 100 | -> | Minus |
2R | 9081570..9081897 | 284..611 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:06:37 Download gff for
BS09183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4968723..4969010 | 612..899 | 100 | -> | Minus |
arm_2R | 4969075..4969402 | 284..611 | 100 | -> | Minus |
arm_2R | 4969470..4969650 | 103..283 | 100 | -> | Minus |
arm_2R | 4969712..4969803 | 11..102 | 96 | | Minus |
BS09183.5prime Sequence
926 bp (879 high quality bases) assembled on 2006-01-24
> BS09183.5prime
GAAGTTATCAGTCGTCATGTCAGCCGAATCATCAAAAGGAGCTATTAACA
ATGGCTACGAACTGGATCATAAGGAGTTGGACATCCGTGACTCGGAAGAA
TTCACGGAACATCCACTGGATGACACCAGCGAGGTGGCAAATAAAAAGGG
ATATTTTGAAAAGAATCCAAAAGTAGCGCGACTGGTGAGGATCTCGATTT
ATGTACTGCTGCATCTGTGTGTTGTGGGGTACTTCTCATATGCAACCTAC
CACTATCACGACATAACCAACTATGAGTGCTATTGGAAAGACAACCCATT
GTGCGGCATCAACTTCTGCACGGGCTATGGAATGCTCCTGCTCCTCCTGG
GATTCATCTATTTGGGTCTATTCTACTACTATGTCTTTAAGCCGATGGTG
GGGCACAGCCTGCACAGGAACTATATCAAACCATTTTCAAAGAAATGGCA
CAACTTCAGCAGAACCAGAGTTGTGTCATTGGCCAGCATCGCATTGCTCC
TGGCCCTTTTGGCCATCTTTGTGTACTTCGAGTGCCGGGACGAGACCCAA
AAACTGGTGTCCCTGGTGGCACCCTGCTTCTTCATCCTGTGCGGCTACGT
TTTCTCCACGAATCGAAGAGCCATTAATTGGCGCATAGTCATCACGGGAA
TCACGTGCCAGTTTCTGCTCGGCATTTTCTGCATCCGCTGGGAGGTGGGA
CGAAAAATCTTCGAGTGCTTGGGCAACAAGGTGGCCACGTTTCTGGGCTA
TGCCACCGATGGAGCCGAGTTCGTGTTCGGCGACTTCCTGGTGAACAACA
ATGTGTTCGCCTTCGCCATCCTGCCGGTTATCTTCTTCTTCAGCTTCTTC
ATCTCCATCCTGTACTACATGGGTACAATGCAGTGGGTGGTGATCAAACT
GGGCTGGATCCTGCAGCAGATCTGGG
BS09183.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8083-PA | 1812 | CG8083-RA | 1..905 | 17..921 | 4525 | 100 | Plus |
CG8083-PC | 1812 | CG8083-RC | 1..905 | 17..921 | 4525 | 100 | Plus |
CG8083-PB | 1809 | CG8083-RB | 55..902 | 74..921 | 4240 | 100 | Plus |
CG8083-PB | 1809 | CG8083-RB | 1..54 | 17..70 | 270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:58:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8083-RC | 2085 | CG8083-RC | 192..1102 | 17..926 | 4530 | 99.9 | Plus |
CG8083-RA | 2115 | CG8083-RA | 222..1132 | 17..926 | 4530 | 99.9 | Plus |
CG8083-RB | 2082 | CG8083-RB | 192..1099 | 17..926 | 4475 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:58:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9080737..9081193 | 465..921 | 2285 | 100 | Plus |
2R | 25286936 | 2R | 9080477..9080678 | 267..468 | 1010 | 100 | Plus |
2R | 25286936 | 2R | 9080228..9080423 | 71..266 | 980 | 100 | Plus |
2R | 25286936 | 2R | 9080116..9080169 | 17..70 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:58:33 has no hits.
BS09183.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:01:56 Download gff for
BS09183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8083-PA | 1..911 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:09:19 Download gff for
BS09183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8083-PC | 1..911 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:43:57 Download gff for
BS09183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8083-RA | 222..1132 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:28:54 Download gff for
BS09183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8083-RA | 222..1132 | 17..926 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:28:54 Download gff for
BS09183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9080116..9080169 | 17..70 | 100 | -> | Plus |
2R | 9080228..9080423 | 71..266 | 100 | -> | Plus |
2R | 9080477..9080678 | 267..468 | 100 | -> | Plus |
2R | 9080741..9081199 | 469..926 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:43:57 Download gff for
BS09183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4967621..4967674 | 17..70 | 100 | -> | Plus |
arm_2R | 4967733..4967928 | 71..266 | 100 | -> | Plus |
arm_2R | 4967982..4968183 | 267..468 | 100 | -> | Plus |
arm_2R | 4968246..4968704 | 469..926 | 99 | | Plus |
BS09183.complete Sequence
1844 bp assembled on 2008-08-15
GenBank Submission: FJ636371
> BS09183.complete
GAAGTTATCAGTCGTCATGTCAGCCGAATCATCAAAAGGAGCTATTAACA
ATGGCTACGAACTGGATCATAAGGAGTTGGACATCCGTGACTCGGAAGAA
TTCACGGAACATCCACTGGATGACACCAGCGAGGTGGCAAATAAAAAGGG
ATATTTTGAAAAGAATCCAAAAGTAGCGCGACTGGTGAGGATCTCGATTT
ATGTACTGCTGCATCTGTGTGTTGTGGGGTACTTCTCATATGCAACCTAC
CACTATCACGACATAACCAACTATGAGTGCTATTGGAAAGACAACCCATT
GTGCGGCATCAACTTCTGCACGGGCTATGGAATGCTCCTGCTCCTCCTGG
GATTCATCTATTTGGGTCTATTCTACTACTATGTCTTTAAGCCGATGGTG
GGGCACAGCCTGCACAGGAACTATATCAAACCATTTTCAAAGAAATGGCA
CAACTTCAGCAGAACCAGAGTTGTGTCATTGGCCAGCATCGCATTGCTCC
TGGCCCTTTTGGCCATCTTTGTGTACTTCGAGTGCCGGGACGAGACCCAA
AAACTGGTGTCCCTGGTGGCACCCTGCTTCTTCATCCTGTGCGGCTACGT
TTTCTCCACGAATCGAAGAGCCATTAATTGGCGCATAGTCATCACGGGAA
TCACGTGCCAGTTTCTGCTCGGCATTTTCTGCATCCGCTGGGAGGTGGGA
CGAAAAATCTTCGAGTGCTTGGGCAACAAGGTGGCCACGTTTCTGGGCTA
TGCCACCGATGGAGCCGAGTTCGTGTTCGGCGACTTCCTGGTGAACAACA
ATGTGTTCGCCTTCGCCATCCTGCCGGTTATCTTCTTCTTCAGCTTCTTC
ATCTCCATCCTGTACTACATGGGTACAATGCAGTGGGTGGTGATCAAACT
GGGCTGGATCCTGCAGCAGATTCTGGGCACCACTGTTTGCGAAAGCGTGA
CGGCCGCAGCCAACATCTTCCTTGGCATGTCCGAGAGCCCGCTGCTCATT
CGGCCGTATATCAACAAGCTGACCAAGAGCGAAATCCACAGCATCATGGT
GTCCGGATTTGCGACCGTGTCCGGAACCGTGTTGGCGGCCTACTTGTCAT
TCGGTGCATCGGCCGCGCACTTGATCACCTCCTCGGTGATGGCAGCTCCC
GCTACTCTGGCCATCTCTAAGCTTTACATGCCCGAAACGGAGGAGAGCCA
GACCTCATCCGATTCAATTGAACTGGAAAAATCACAGGACTCTTCGCTGC
TGGACGCAGCGTCCAGTGGTGCCAGCAACGCCGTGCCCATTGTTCTGGGC
ATTATCGCTAACATAGTCGCCTTCGTCGCCTTCATCGCCTTCCTAAATGG
TCTGGTCAGTTGGTTTGGTTACCTGGTGGGTCTCGAGCAAATCGACTTCG
AGTGGATATTCTCTAAGCTGTTCATCCCGCTGGTCTGGGCCATGGGGGTG
CCAAAAGAGGATTGCGATATCATCGCCAAGGTGGTGGCCACCAAAACCAT
TATCAATGAGTTTGTGGCCTATGAGCGTCTGGGTCAATACATCGAAAATA
ATGATATCACTGCCCGCAGCGCTGGAATCGCCACATTCGCCATCTGCGGC
TTTGCCAATCCCAGTTCCCTGGGCATCCTTATCGGATCCCTCAGTGCTAT
GGCACCACATCGTCGCTCCACCATTACAGCAGTGGCTTTCCGAGCGTTTG
TGGTGGGCAGCATAGTCTGTTTCGTATCCGCCAGCTTTGCAGGCATCCTT
ATACAAGAAGATGACGAGCGGGCGAACTACAACAGGATATTCGAGAAGTT
GGGTCGAAAGAATGTTACTCAGTTTTAGAAGCTTTCTAGACCAT
BS09183.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:29:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8083-RC | 1812 | CG8083-PC | 1..1812 | 17..1828 | 9060 | 100 | Plus |
CG8083-RA | 1812 | CG8083-PA | 1..1812 | 17..1828 | 9060 | 100 | Plus |
CG8083-RB | 1809 | CG8083-PB | 1..1809 | 17..1828 | 8980 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:29:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8083-RC | 2085 | CG8083-RC | 192..2003 | 17..1828 | 9060 | 100 | Plus |
CG8083-RA | 2115 | CG8083-RA | 222..2033 | 17..1828 | 9060 | 100 | Plus |
CG8083-RB | 2082 | CG8083-RB | 192..2000 | 17..1828 | 8980 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:29:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9080737..9081505 | 465..1233 | 3845 | 100 | Plus |
2R | 25286936 | 2R | 9081570..9081898 | 1234..1562 | 1645 | 100 | Plus |
2R | 25286936 | 2R | 9080477..9080678 | 267..468 | 1010 | 100 | Plus |
2R | 25286936 | 2R | 9080228..9080423 | 71..266 | 980 | 100 | Plus |
2R | 25286936 | 2R | 9081965..9082146 | 1562..1743 | 910 | 100 | Plus |
2R | 25286936 | 2R | 9082205..9082292 | 1741..1828 | 440 | 100 | Plus |
2R | 25286936 | 2R | 9080116..9080169 | 17..70 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:29:37 has no hits.
BS09183.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:54:44 Download gff for
BS09183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8083-RC | 186..2003 | 17..1834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:39 Download gff for
BS09183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8083-RA | 222..2033 | 17..1828 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:56 Download gff for
BS09183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8083-RC | 184..1995 | 17..1828 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:42 Download gff for
BS09183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8083-RA | 222..2033 | 17..1828 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:42 Download gff for
BS09183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9080477..9080678 | 267..468 | 100 | -> | Plus |
2R | 9080228..9080423 | 71..266 | 100 | -> | Plus |
2R | 9080116..9080169 | 17..70 | 100 | -> | Plus |
2R | 9080741..9081505 | 469..1233 | 100 | -> | Plus |
2R | 9081570..9081897 | 1234..1561 | 100 | -> | Plus |
2R | 9081965..9082145 | 1562..1742 | 100 | -> | Plus |
2R | 9082207..9082292 | 1743..1828 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:39 Download gff for
BS09183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4967982..4968183 | 267..468 | 100 | -> | Plus |
arm_2R | 4969470..4969650 | 1562..1742 | 100 | -> | Plus |
arm_2R | 4969075..4969402 | 1234..1561 | 100 | -> | Plus |
arm_2R | 4969712..4969797 | 1743..1828 | 100 | | Plus |
arm_2R | 4967621..4967674 | 17..70 | 100 | -> | Plus |
arm_2R | 4967733..4967928 | 71..266 | 100 | -> | Plus |
arm_2R | 4968246..4969010 | 469..1233 | 100 | -> | Plus |
BS09183.pep Sequence
Translation from 16 to 1827
> BS09183.pep
MSAESSKGAINNGYELDHKELDIRDSEEFTEHPLDDTSEVANKKGYFEKN
PKVARLVRISIYVLLHLCVVGYFSYATYHYHDITNYECYWKDNPLCGINF
CTGYGMLLLLLGFIYLGLFYYYVFKPMVGHSLHRNYIKPFSKKWHNFSRT
RVVSLASIALLLALLAIFVYFECRDETQKLVSLVAPCFFILCGYVFSTNR
RAINWRIVITGITCQFLLGIFCIRWEVGRKIFECLGNKVATFLGYATDGA
EFVFGDFLVNNNVFAFAILPVIFFFSFFISILYYMGTMQWVVIKLGWILQ
QILGTTVCESVTAAANIFLGMSESPLLIRPYINKLTKSEIHSIMVSGFAT
VSGTVLAAYLSFGASAAHLITSSVMAAPATLAISKLYMPETEESQTSSDS
IELEKSQDSSLLDAASSGASNAVPIVLGIIANIVAFVAFIAFLNGLVSWF
GYLVGLEQIDFEWIFSKLFIPLVWAMGVPKEDCDIIAKVVATKTIINEFV
AYERLGQYIENNDITARSAGIATFAICGFANPSSLGILIGSLSAMAPHRR
STITAVAFRAFVVGSIVCFVSASFAGILIQEDDERANYNRIFEKLGRKNV
TQF*
BS09183.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:41:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8083-PC | 603 | CG8083-PC | 1..603 | 1..603 | 3111 | 100 | Plus |
CG8083-PA | 603 | CG8083-PA | 1..603 | 1..603 | 3111 | 100 | Plus |
CG8083-PB | 602 | CG8083-PB | 1..602 | 1..603 | 3094 | 99.8 | Plus |
CNT1-PB | 590 | CG11778-PB | 6..585 | 44..582 | 1398 | 49.5 | Plus |