Clone BS09188 Report

Search the DGRC for BS09188

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:91
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCpr49Ac-RA
Protein status:BS09188.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09188.3prime Sequence

842 bp (841 high quality bases) assembled on 2006-01-24

> BS09188.3prime
ATGGTCTAGAAAGCTTTTAGTGGGACTTTGCTGCCTGGCGGAGTCGCTCC
AATGCGGCCTGCTCCTCGCGCTCCTCCTCCTCGGCGAGCTCCACCTCGTG
CTCCAGCATATGGATCTGCTCGGTCAGCTCCTTGGGCATCTCCTCCAGAT
GGATCGCCTTGATCTGCGCCTTAAGGTCCTTGGTCATGTGATTGATGCGG
AAGCCGCGATGGTCGAACTGAGCCCCACCGTTGATCTTGTGCTGCTCCTC
CACGTACTTGAGGGCACGGACAATGGCATCGGGGATCGGGTGAATGTGGT
CTCCCTGGGGCATGAAGCCGCCATCGTTGGAGGCGTAGTTTACGCGATAA
AGCTTGCCATCGTCACCGGTGTACTCATAGAATCCCTTGGCATGTGTGCC
TCCGGTGTGGTGAAGCTTGGCCTGCTCCTCGCCATAGATTCCATTCTCAG
TCAGGTAAGAGTGATCGTATTTGTCCTGTTTGCGGACCTCTTCCTTGTGC
AGGATCTTGTGGCGACCCTCATCATCGTAGTTGAACAGAATATTGCGGGG
CGTGGTGGTGGTGGTGGTGGTCGAGGTTGTCGTCCTTTTGGTGGTCGTGG
TTGGTTTCTTGGTGGTCGTGCTTGTGTACAGGTCGTGGTTGTAAGGCCTG
TCGTCATGGACATAGGGAATATTCGAACCAGCGTAGGGTCCATAGCCTCC
GTCATAGGGATAGGGAATGTGATGGTATTTTCCAAGCTCACGCTGATCGC
TCACATGTCTGTAGGGAATCGGCATGTGATGATAGCGACCTATACTTTCT
TGCGAACCACTCCGGCCATTATTATCCGGAACGGGACTGGCG

BS09188.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8502-PA 885 CG8502-RA 60..885 842..17 4130 100 Minus
CG8502-PC 975 CG8502-RC 175..975 817..17 4005 100 Minus
CG8502-PC 975 CG8502-RC 60..87 842..815 140 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:17:54
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr49Ac-RA 1344 CG8502-RA 157..982 842..17 4130 100 Minus
Cpr49Ac-RC 1434 CG8502-RC 272..1072 817..17 4005 100 Minus
Cpr49Ac-RG 1701 CG8502-RG 565..1339 791..17 3875 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 05:17:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12389254..12389695 458..17 2210 100 Minus
2R 25286936 2R 12388923..12389086 622..459 820 100 Minus
2R 25286936 2R 12388298..12388450 791..639 765 100 Minus
Blast to na_te.dros performed on 2015-02-01 05:17:51 has no hits.

BS09188.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:03 Download gff for BS09188.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8502-PA 60..885 17..842 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:09:29 Download gff for BS09188.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8502-PA 60..885 17..842 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:14:25 Download gff for BS09188.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ac-RA 157..987 9..842 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:54:26 Download gff for BS09188.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ac-RA 157..987 9..842 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:54:26 Download gff for BS09188.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12388300..12388450 639..789 100 -> Minus
2R 12388518..12388533 623..638 100 -> Minus
2R 12388923..12389086 459..622 100 -> Minus
2R 12387402..12387427 817..842 100 -> Minus
2R 12387913..12387939 790..816 100 -> Minus
2R 12389254..12389700 9..458 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:14:25 Download gff for BS09188.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8275805..8275955 639..789 100 -> Minus
arm_2R 8276023..8276038 623..638 100 -> Minus
arm_2R 8274907..8274932 817..842 100 -> Minus
arm_2R 8275418..8275444 790..816 100 -> Minus
arm_2R 8276428..8276591 459..622 100 -> Minus
arm_2R 8276759..8277205 9..458 99   Minus

BS09188.5prime Sequence

915 bp (854 high quality bases) assembled on 2006-01-24

> BS09188.5prime
GAAGTTATCAGTCGACATGTTCACCAAGTCAATGCTGAGCTTCTCCCTGG
TCGTGGCCCTCTTCGTTGTCTGCCACGCCAGTCCCGTTCCGGATAATAAT
GGCCGGAGTGGTTCGCAAGAAAGTATAGGTCGCTATCATCACATGCCGAT
TCCCTACAGACATGTGAGCGATCAGCGTGAGCTTGGAAAATACCATCACA
TTCCCTATCCCTATGACGGAGGCTATGGACCCTACGCTGGTTCGAATATT
CCCTATGTCCATGACGACAGGCCTTACAACCACGACCTGTACACAAGCAC
GACCACCAAGAAACCAACCACGACCACCAAAAGGACGACAACCTCGACCA
CCACCACCACCACCACGCCCCGCAATATTCTGTTCAACTACGATGATGAG
GGTCGCCACAAGATCCTGCACAAGGAAGAGGTCCGCAAACAGGACAAATA
CGATCACTCTTACCTGACTGAGAATGGAATCTATGGCGAGGAGCAGGCCA
AGCTTCACCACACCGGAGGCACACATGCCAAGGGATTCTATGAGTACACC
GGTGACGATGGCAAGCTTTATCGCGTAAACTACGCCTCCAACGATGGCGG
CTTCATGCCCCAGGGAGACCACATTCACCCGATCCCCGATGCCATTGTCC
GTGCCCTCAAGTACGTGGAGGAGCAGCACAAGATCAACGGTGGGGCTCAG
TTCGACCATCGCGGCTTCCGCATCAATCACATGACCAAGGACCTTAAGGC
GCAGATCAAGGCGATCCATCTGGAGGAGATGCCCAAGGAGCTGACCGAGC
AGATCCATATGCTGGAGCACGAGGTGGAGCTCGCCGAGGAGGAGGAGCGC
GAGGAGCANGCCGCATTGGAGCGACTCCGCCAGGCAGCAAAGTCCCACTA
AAAGCTTTCTAGACC

BS09188.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG8502-PA 885 CG8502-RA 1..885 17..901 4406 99.8 Plus
CG8502-PC 975 CG8502-RC 175..975 101..901 3986 99.8 Plus
CG8502-PC 975 CG8502-RC 1..87 17..103 435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr49Ac-RA 1344 CG8502-RA 96..982 15..901 4424 99.9 Plus
Cpr49Ac-RC 1434 CG8502-RC 272..1072 101..901 3994 99.9 Plus
Cpr49Ac-RE 1317 CG8502-RE 96..955 15..901 3969 96.8 Plus
Cpr49Ac-RC 1434 CG8502-RC 96..184 15..103 445 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:28:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12389254..12389695 460..901 2199 99.8 Plus
2R 25286936 2R 12388923..12389086 296..459 820 100 Plus
2R 25286936 2R 12388298..12388450 127..279 765 100 Plus
2R 25286936 2R 12387381..12387429 55..103 245 100 Plus
2R 25286936 2R 12387055..12387096 15..56 210 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:28:26 has no hits.

BS09188.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:04 Download gff for BS09188.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8502-PA 1..885 17..901 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:09:30 Download gff for BS09188.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8502-PA 1..885 17..901 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:24:05 Download gff for BS09188.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ac-RA 91..987 10..909 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:44:34 Download gff for BS09188.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ac-RA 91..987 10..909 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:44:34 Download gff for BS09188.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12387050..12387095 10..55 95 -> Plus
2R 12387382..12387427 56..101 100 -> Plus
2R 12387913..12387939 102..128 100 -> Plus
2R 12388300..12388450 129..279 100 -> Plus
2R 12388518..12388533 280..295 100 -> Plus
2R 12388923..12389086 296..459 100 -> Plus
2R 12389254..12389700 460..909 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:24:05 Download gff for BS09188.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8274555..8274600 10..55 95 -> Plus
arm_2R 8274887..8274932 56..101 100 -> Plus
arm_2R 8275418..8275444 102..128 100 -> Plus
arm_2R 8275805..8275955 129..279 100 -> Plus
arm_2R 8276023..8276038 280..295 100 -> Plus
arm_2R 8276428..8276591 296..459 100 -> Plus
arm_2R 8276759..8277205 460..909 98   Plus

BS09188.complete Sequence

917 bp (917 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636372

> BS09188.complete
GAAGTTATCAGTCGACATGTTCACCAAGTCAATGCTGAGCTTCTCCCTGG
TCGTGGCCCTCTTCGTTGTCTGCCACGCCAGTCCCGTTCCGGATAATAAT
GGCCGGAGTGGTTCGCAAGAAAGTATAGGTCGCTATCATCACATGCCGAT
TCCCTACAGACATGTGAGCGATCAGCGTGAGCTTGGAAAATACCATCACA
TTCCCTATCCCTATGACGGAGGCTATGGACCCTACGCTGGTTCGAATATT
CCCTATGTCCATGACGACAGGCCTTACAACCACGACCTGTACACAAGCAC
GACCACCAAGAAACCAACCACGACCACCAAAAGGACGACAACCTCGACCA
CCACCACCACCACCACGCCCCGCAATATTCTGTTCAACTACGATGATGAG
GGTCGCCACAAGATCCTGCACAAGGAAGAGGTCCGCAAACAGGACAAATA
CGATCACTCTTACCTGACTGAGAATGGAATCTATGGCGAGGAGCAGGCCA
AGCTTCACCACACCGGAGGCACACATGCCAAGGGATTCTATGAGTACACC
GGTGACGATGGCAAGCTTTATCGCGTAAACTACGCCTCCAACGATGGCGG
CTTCATGCCCCAGGGAGACCACATTCACCCGATCCCCGATGCCATTGTCC
GTGCCCTCAAGTACGTGGAGGAGCAGCACAAGATCAACGGTGGGGCTCAG
TTCGACCATCGCGGCTTCCGCATCAATCACATGACCAAGGACCTTAAGGC
GCAGATCAAGGCGATCCATCTGGAGGAGATGCCCAAGGAGCTGACCGAGC
AGATCCATATGCTGGAGCACGAGGTGGAGCTCGCCGAGGAGGAGGAGCGC
GAGGAGCAGGCCGCATTGGAGCGACTCCGCCAGGCAGCAAAGTCCCACTA
AAAGCTTTCTAGACCAT

BS09188.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:20:07
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr49Ac-RA 885 CG8502-PA 1..885 17..901 4425 100 Plus
Cpr49Ac-RC 975 CG8502-PC 175..975 101..901 4005 100 Plus
Cpr49Ac-RG 948 CG8502-PG 174..948 127..901 3875 100 Plus
Cpr49Ac-RC 975 CG8502-PC 1..87 17..103 435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:20:09
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr49Ac-RA 1344 CG8502-RA 96..982 15..901 4435 100 Plus
Cpr49Ac-RC 1434 CG8502-RC 272..1072 101..901 4005 100 Plus
Cpr49Ac-RG 1701 CG8502-RG 565..1339 127..901 3875 100 Plus
Cpr49Ac-RC 1434 CG8502-RC 96..184 15..103 445 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12389254..12389695 460..901 2210 100 Plus
2R 25286936 2R 12388923..12389086 296..459 820 100 Plus
2R 25286936 2R 12388298..12388450 127..279 765 100 Plus
2R 25286936 2R 12387381..12387429 55..103 245 100 Plus
2R 25286936 2R 12387055..12387096 15..56 210 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:20:06 has no hits.

BS09188.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:59 Download gff for BS09188.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ac-RA 1..885 17..901 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:34 Download gff for BS09188.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ac-RA 72..968 10..909 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:22:35 Download gff for BS09188.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ac-RA 103..980 22..899 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:59 Download gff for BS09188.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ac-RA 72..968 10..909 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:07 Download gff for BS09188.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ac-RA 103..980 22..899 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:07 Download gff for BS09188.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12388923..12389086 296..459 100 -> Plus
2R 12388300..12388450 129..279 100 -> Plus
2R 12388518..12388533 280..295 100 -> Plus
2R 12387062..12387095 22..55 100 -> Plus
2R 12387382..12387427 56..101 100 -> Plus
2R 12387913..12387939 102..128 100 -> Plus
2R 12389254..12389693 460..899 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:22:35 Download gff for BS09188.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8274567..8274600 22..55 100 -> Plus
arm_2R 8274887..8274932 56..101 100 -> Plus
arm_2R 8275418..8275444 102..128 100 -> Plus
arm_2R 8275805..8275955 129..279 100 -> Plus
arm_2R 8276023..8276038 280..295 100 -> Plus
arm_2R 8276428..8276591 296..459 100 -> Plus
arm_2R 8276759..8277198 460..899 100   Plus

BS09188.pep Sequence

Translation from 16 to 900

> BS09188.pep
MFTKSMLSFSLVVALFVVCHASPVPDNNGRSGSQESIGRYHHMPIPYRHV
SDQRELGKYHHIPYPYDGGYGPYAGSNIPYVHDDRPYNHDLYTSTTTKKP
TTTTKRTTTSTTTTTTTPRNILFNYDDEGRHKILHKEEVRKQDKYDHSYL
TENGIYGEEQAKLHHTGGTHAKGFYEYTGDDGKLYRVNYASNDGGFMPQG
DHIHPIPDAIVRALKYVEEQHKINGGAQFDHRGFRINHMTKDLKAQIKAI
HLEEMPKELTEQIHMLEHEVELAEEEEREEQAALERLRQAAKSH*

BS09188.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:42:34
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr49Ac-PA 294 CG8502-PA 1..294 1..294 1594 100 Plus
Cpr49Ac-PC 324 CG8502-PC 1..324 1..294 1553 90.7 Plus
Cpr49Ac-PG 315 CG8502-PG 1..315 1..294 1533 91.1 Plus
Cpr49Ac-PF 315 CG8502-PF 1..315 1..294 1533 91.1 Plus
Cpr49Ac-PE 285 CG8502-PE 1..285 1..294 1531 96.9 Plus