Clone Sequence Records
BS09188.3prime Sequence
842 bp (841 high quality bases) assembled on 2006-01-24
> BS09188.3prime
ATGGTCTAGAAAGCTTTTAGTGGGACTTTGCTGCCTGGCGGAGTCGCTCC
AATGCGGCCTGCTCCTCGCGCTCCTCCTCCTCGGCGAGCTCCACCTCGTG
CTCCAGCATATGGATCTGCTCGGTCAGCTCCTTGGGCATCTCCTCCAGAT
GGATCGCCTTGATCTGCGCCTTAAGGTCCTTGGTCATGTGATTGATGCGG
AAGCCGCGATGGTCGAACTGAGCCCCACCGTTGATCTTGTGCTGCTCCTC
CACGTACTTGAGGGCACGGACAATGGCATCGGGGATCGGGTGAATGTGGT
CTCCCTGGGGCATGAAGCCGCCATCGTTGGAGGCGTAGTTTACGCGATAA
AGCTTGCCATCGTCACCGGTGTACTCATAGAATCCCTTGGCATGTGTGCC
TCCGGTGTGGTGAAGCTTGGCCTGCTCCTCGCCATAGATTCCATTCTCAG
TCAGGTAAGAGTGATCGTATTTGTCCTGTTTGCGGACCTCTTCCTTGTGC
AGGATCTTGTGGCGACCCTCATCATCGTAGTTGAACAGAATATTGCGGGG
CGTGGTGGTGGTGGTGGTGGTCGAGGTTGTCGTCCTTTTGGTGGTCGTGG
TTGGTTTCTTGGTGGTCGTGCTTGTGTACAGGTCGTGGTTGTAAGGCCTG
TCGTCATGGACATAGGGAATATTCGAACCAGCGTAGGGTCCATAGCCTCC
GTCATAGGGATAGGGAATGTGATGGTATTTTCCAAGCTCACGCTGATCGC
TCACATGTCTGTAGGGAATCGGCATGTGATGATAGCGACCTATACTTTCT
TGCGAACCACTCCGGCCATTATTATCCGGAACGGGACTGGCG
BS09188.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8502-PA | 885 | CG8502-RA | 60..885 | 842..17 | 4130 | 100 | Minus |
CG8502-PC | 975 | CG8502-RC | 175..975 | 817..17 | 4005 | 100 | Minus |
CG8502-PC | 975 | CG8502-RC | 60..87 | 842..815 | 140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:17:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr49Ac-RA | 1344 | CG8502-RA | 157..982 | 842..17 | 4130 | 100 | Minus |
Cpr49Ac-RC | 1434 | CG8502-RC | 272..1072 | 817..17 | 4005 | 100 | Minus |
Cpr49Ac-RG | 1701 | CG8502-RG | 565..1339 | 791..17 | 3875 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 05:17:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12389254..12389695 | 458..17 | 2210 | 100 | Minus |
2R | 25286936 | 2R | 12388923..12389086 | 622..459 | 820 | 100 | Minus |
2R | 25286936 | 2R | 12388298..12388450 | 791..639 | 765 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 05:17:51 has no hits.
BS09188.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:03 Download gff for
BS09188.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8502-PA | 60..885 | 17..842 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:09:29 Download gff for
BS09188.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8502-PA | 60..885 | 17..842 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:14:25 Download gff for
BS09188.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ac-RA | 157..987 | 9..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:54:26 Download gff for
BS09188.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ac-RA | 157..987 | 9..842 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:54:26 Download gff for
BS09188.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12388300..12388450 | 639..789 | 100 | -> | Minus |
2R | 12388518..12388533 | 623..638 | 100 | -> | Minus |
2R | 12388923..12389086 | 459..622 | 100 | -> | Minus |
2R | 12387402..12387427 | 817..842 | 100 | -> | Minus |
2R | 12387913..12387939 | 790..816 | 100 | -> | Minus |
2R | 12389254..12389700 | 9..458 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:14:25 Download gff for
BS09188.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8275805..8275955 | 639..789 | 100 | -> | Minus |
arm_2R | 8276023..8276038 | 623..638 | 100 | -> | Minus |
arm_2R | 8274907..8274932 | 817..842 | 100 | -> | Minus |
arm_2R | 8275418..8275444 | 790..816 | 100 | -> | Minus |
arm_2R | 8276428..8276591 | 459..622 | 100 | -> | Minus |
arm_2R | 8276759..8277205 | 9..458 | 99 | | Minus |
BS09188.5prime Sequence
915 bp (854 high quality bases) assembled on 2006-01-24
> BS09188.5prime
GAAGTTATCAGTCGACATGTTCACCAAGTCAATGCTGAGCTTCTCCCTGG
TCGTGGCCCTCTTCGTTGTCTGCCACGCCAGTCCCGTTCCGGATAATAAT
GGCCGGAGTGGTTCGCAAGAAAGTATAGGTCGCTATCATCACATGCCGAT
TCCCTACAGACATGTGAGCGATCAGCGTGAGCTTGGAAAATACCATCACA
TTCCCTATCCCTATGACGGAGGCTATGGACCCTACGCTGGTTCGAATATT
CCCTATGTCCATGACGACAGGCCTTACAACCACGACCTGTACACAAGCAC
GACCACCAAGAAACCAACCACGACCACCAAAAGGACGACAACCTCGACCA
CCACCACCACCACCACGCCCCGCAATATTCTGTTCAACTACGATGATGAG
GGTCGCCACAAGATCCTGCACAAGGAAGAGGTCCGCAAACAGGACAAATA
CGATCACTCTTACCTGACTGAGAATGGAATCTATGGCGAGGAGCAGGCCA
AGCTTCACCACACCGGAGGCACACATGCCAAGGGATTCTATGAGTACACC
GGTGACGATGGCAAGCTTTATCGCGTAAACTACGCCTCCAACGATGGCGG
CTTCATGCCCCAGGGAGACCACATTCACCCGATCCCCGATGCCATTGTCC
GTGCCCTCAAGTACGTGGAGGAGCAGCACAAGATCAACGGTGGGGCTCAG
TTCGACCATCGCGGCTTCCGCATCAATCACATGACCAAGGACCTTAAGGC
GCAGATCAAGGCGATCCATCTGGAGGAGATGCCCAAGGAGCTGACCGAGC
AGATCCATATGCTGGAGCACGAGGTGGAGCTCGCCGAGGAGGAGGAGCGC
GAGGAGCANGCCGCATTGGAGCGACTCCGCCAGGCAGCAAAGTCCCACTA
AAAGCTTTCTAGACC
BS09188.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8502-PA | 885 | CG8502-RA | 1..885 | 17..901 | 4406 | 99.8 | Plus |
CG8502-PC | 975 | CG8502-RC | 175..975 | 101..901 | 3986 | 99.8 | Plus |
CG8502-PC | 975 | CG8502-RC | 1..87 | 17..103 | 435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:28:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr49Ac-RA | 1344 | CG8502-RA | 96..982 | 15..901 | 4424 | 99.9 | Plus |
Cpr49Ac-RC | 1434 | CG8502-RC | 272..1072 | 101..901 | 3994 | 99.9 | Plus |
Cpr49Ac-RE | 1317 | CG8502-RE | 96..955 | 15..901 | 3969 | 96.8 | Plus |
Cpr49Ac-RC | 1434 | CG8502-RC | 96..184 | 15..103 | 445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:28:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12389254..12389695 | 460..901 | 2199 | 99.8 | Plus |
2R | 25286936 | 2R | 12388923..12389086 | 296..459 | 820 | 100 | Plus |
2R | 25286936 | 2R | 12388298..12388450 | 127..279 | 765 | 100 | Plus |
2R | 25286936 | 2R | 12387381..12387429 | 55..103 | 245 | 100 | Plus |
2R | 25286936 | 2R | 12387055..12387096 | 15..56 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:28:26 has no hits.
BS09188.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:04 Download gff for
BS09188.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8502-PA | 1..885 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:09:30 Download gff for
BS09188.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8502-PA | 1..885 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:24:05 Download gff for
BS09188.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ac-RA | 91..987 | 10..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:44:34 Download gff for
BS09188.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ac-RA | 91..987 | 10..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:44:34 Download gff for
BS09188.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12387050..12387095 | 10..55 | 95 | -> | Plus |
2R | 12387382..12387427 | 56..101 | 100 | -> | Plus |
2R | 12387913..12387939 | 102..128 | 100 | -> | Plus |
2R | 12388300..12388450 | 129..279 | 100 | -> | Plus |
2R | 12388518..12388533 | 280..295 | 100 | -> | Plus |
2R | 12388923..12389086 | 296..459 | 100 | -> | Plus |
2R | 12389254..12389700 | 460..909 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:24:05 Download gff for
BS09188.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8274555..8274600 | 10..55 | 95 | -> | Plus |
arm_2R | 8274887..8274932 | 56..101 | 100 | -> | Plus |
arm_2R | 8275418..8275444 | 102..128 | 100 | -> | Plus |
arm_2R | 8275805..8275955 | 129..279 | 100 | -> | Plus |
arm_2R | 8276023..8276038 | 280..295 | 100 | -> | Plus |
arm_2R | 8276428..8276591 | 296..459 | 100 | -> | Plus |
arm_2R | 8276759..8277205 | 460..909 | 98 | | Plus |
BS09188.complete Sequence
917 bp (917 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636372
> BS09188.complete
GAAGTTATCAGTCGACATGTTCACCAAGTCAATGCTGAGCTTCTCCCTGG
TCGTGGCCCTCTTCGTTGTCTGCCACGCCAGTCCCGTTCCGGATAATAAT
GGCCGGAGTGGTTCGCAAGAAAGTATAGGTCGCTATCATCACATGCCGAT
TCCCTACAGACATGTGAGCGATCAGCGTGAGCTTGGAAAATACCATCACA
TTCCCTATCCCTATGACGGAGGCTATGGACCCTACGCTGGTTCGAATATT
CCCTATGTCCATGACGACAGGCCTTACAACCACGACCTGTACACAAGCAC
GACCACCAAGAAACCAACCACGACCACCAAAAGGACGACAACCTCGACCA
CCACCACCACCACCACGCCCCGCAATATTCTGTTCAACTACGATGATGAG
GGTCGCCACAAGATCCTGCACAAGGAAGAGGTCCGCAAACAGGACAAATA
CGATCACTCTTACCTGACTGAGAATGGAATCTATGGCGAGGAGCAGGCCA
AGCTTCACCACACCGGAGGCACACATGCCAAGGGATTCTATGAGTACACC
GGTGACGATGGCAAGCTTTATCGCGTAAACTACGCCTCCAACGATGGCGG
CTTCATGCCCCAGGGAGACCACATTCACCCGATCCCCGATGCCATTGTCC
GTGCCCTCAAGTACGTGGAGGAGCAGCACAAGATCAACGGTGGGGCTCAG
TTCGACCATCGCGGCTTCCGCATCAATCACATGACCAAGGACCTTAAGGC
GCAGATCAAGGCGATCCATCTGGAGGAGATGCCCAAGGAGCTGACCGAGC
AGATCCATATGCTGGAGCACGAGGTGGAGCTCGCCGAGGAGGAGGAGCGC
GAGGAGCAGGCCGCATTGGAGCGACTCCGCCAGGCAGCAAAGTCCCACTA
AAAGCTTTCTAGACCAT
BS09188.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:20:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr49Ac-RA | 885 | CG8502-PA | 1..885 | 17..901 | 4425 | 100 | Plus |
Cpr49Ac-RC | 975 | CG8502-PC | 175..975 | 101..901 | 4005 | 100 | Plus |
Cpr49Ac-RG | 948 | CG8502-PG | 174..948 | 127..901 | 3875 | 100 | Plus |
Cpr49Ac-RC | 975 | CG8502-PC | 1..87 | 17..103 | 435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:20:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr49Ac-RA | 1344 | CG8502-RA | 96..982 | 15..901 | 4435 | 100 | Plus |
Cpr49Ac-RC | 1434 | CG8502-RC | 272..1072 | 101..901 | 4005 | 100 | Plus |
Cpr49Ac-RG | 1701 | CG8502-RG | 565..1339 | 127..901 | 3875 | 100 | Plus |
Cpr49Ac-RC | 1434 | CG8502-RC | 96..184 | 15..103 | 445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:20:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12389254..12389695 | 460..901 | 2210 | 100 | Plus |
2R | 25286936 | 2R | 12388923..12389086 | 296..459 | 820 | 100 | Plus |
2R | 25286936 | 2R | 12388298..12388450 | 127..279 | 765 | 100 | Plus |
2R | 25286936 | 2R | 12387381..12387429 | 55..103 | 245 | 100 | Plus |
2R | 25286936 | 2R | 12387055..12387096 | 15..56 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:20:06 has no hits.
BS09188.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:59 Download gff for
BS09188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ac-RA | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:34 Download gff for
BS09188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ac-RA | 72..968 | 10..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:22:35 Download gff for
BS09188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ac-RA | 103..980 | 22..899 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:59 Download gff for
BS09188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ac-RA | 72..968 | 10..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:07 Download gff for
BS09188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ac-RA | 103..980 | 22..899 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:07 Download gff for
BS09188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12388923..12389086 | 296..459 | 100 | -> | Plus |
2R | 12388300..12388450 | 129..279 | 100 | -> | Plus |
2R | 12388518..12388533 | 280..295 | 100 | -> | Plus |
2R | 12387062..12387095 | 22..55 | 100 | -> | Plus |
2R | 12387382..12387427 | 56..101 | 100 | -> | Plus |
2R | 12387913..12387939 | 102..128 | 100 | -> | Plus |
2R | 12389254..12389693 | 460..899 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:22:35 Download gff for
BS09188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8274567..8274600 | 22..55 | 100 | -> | Plus |
arm_2R | 8274887..8274932 | 56..101 | 100 | -> | Plus |
arm_2R | 8275418..8275444 | 102..128 | 100 | -> | Plus |
arm_2R | 8275805..8275955 | 129..279 | 100 | -> | Plus |
arm_2R | 8276023..8276038 | 280..295 | 100 | -> | Plus |
arm_2R | 8276428..8276591 | 296..459 | 100 | -> | Plus |
arm_2R | 8276759..8277198 | 460..899 | 100 | | Plus |
BS09188.pep Sequence
Translation from 16 to 900
> BS09188.pep
MFTKSMLSFSLVVALFVVCHASPVPDNNGRSGSQESIGRYHHMPIPYRHV
SDQRELGKYHHIPYPYDGGYGPYAGSNIPYVHDDRPYNHDLYTSTTTKKP
TTTTKRTTTSTTTTTTTPRNILFNYDDEGRHKILHKEEVRKQDKYDHSYL
TENGIYGEEQAKLHHTGGTHAKGFYEYTGDDGKLYRVNYASNDGGFMPQG
DHIHPIPDAIVRALKYVEEQHKINGGAQFDHRGFRINHMTKDLKAQIKAI
HLEEMPKELTEQIHMLEHEVELAEEEEREEQAALERLRQAAKSH*
BS09188.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:42:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr49Ac-PA | 294 | CG8502-PA | 1..294 | 1..294 | 1594 | 100 | Plus |
Cpr49Ac-PC | 324 | CG8502-PC | 1..324 | 1..294 | 1553 | 90.7 | Plus |
Cpr49Ac-PG | 315 | CG8502-PG | 1..315 | 1..294 | 1533 | 91.1 | Plus |
Cpr49Ac-PF | 315 | CG8502-PF | 1..315 | 1..294 | 1533 | 91.1 | Plus |
Cpr49Ac-PE | 285 | CG8502-PE | 1..285 | 1..294 | 1531 | 96.9 | Plus |