Clone BS09189 Report

Search the DGRC for BS09189

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:91
Well:89
Vector:pDNR-Dual
Associated Gene/Transcriptobsolete transcript model
Protein status:BS09189.pep: Imported from assembly
Sequenced Size:356

Clone Sequence Records

BS09189.3prime Sequence

354 bp (353 high quality bases) assembled on 2006-01-24

> BS09189.3prime
ATGGTCTAGAAAGCTTTTACTGATCGTTCTCGAAGTACGGCGGCGAATTG
GTGCGATCGGGCAGAAAGAACGCCAATTGGACCGTGGAGGCCAGTGCGGG
CGGCTCGTCACGACCCACCTTAACCTCTTCCGCAATTACGGTGAGCAGCA
CCGGATCACCCACATGCGTGATGAAGGCAATGTCCTCGAGGGGTCGCATC
AGGAAGATCTCGCCTGTAATGCAAATAGCCGAAGCGTTGATTGATTTAAT
GCACAGGTTGGAAGGGTAAGCTATATTTAAGATTAATTGCATGGAGTTCC
TGAAAATTAATACAACGTAAAATAATCCTAAAGAGTCCATGTCGACTGAT
AACT

BS09189.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4655-PB 324 CG4655-RB 1..324 340..17 1595 99.6 Minus
CG4655-PA 1512 CG4655-RA 1315..1512 214..17 990 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
Cad86C-RG 7212 CG42601-RG 2187..2380 214..21 970 100 Minus
Cad86C-RF 6665 CG42601-RF 1531..1724 214..21 970 100 Minus
Cad86C-RE 6563 CG42601-RE 1447..1640 214..21 970 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10841665..10841988 340..17 1605 99.7 Minus
Blast to na_te.dros performed 2015-02-02 18:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 5195..5231 178..142 104 75.7 Minus

BS09189.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:06 Download gff for BS09189.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4655-PB 1..324 17..340 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:09:32 Download gff for BS09189.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4655-PB 1..324 17..340 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:32:25 Download gff for BS09189.3prime
Subject Subject Range Query Range Percent Splice Strand
Cad86C-RE 1442..1643 18..221 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:55:10 Download gff for BS09189.3prime
Subject Subject Range Query Range Percent Splice Strand
Cad86C-RE 1442..1643 18..221 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:55:10 Download gff for BS09189.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10841665..10841988 17..340 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:32:25 Download gff for BS09189.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6667387..6667710 17..340 99   Minus

BS09189.5prime Sequence

354 bp (353 high quality bases) assembled on 2006-01-24

> BS09189.5prime
GAAGTTATCAGTCGACATGGACTCTTTAGGATTATTTTACGTTGTATTAA
TTTTCAGGAACTCCATGCAATTAATCTTAAATATAGCTTACCCTTCCAAC
CTGTGCATTAAATCAATCAACGCTTCGGCTATTTGCATTACAGGCGAGAT
CTTCCTGATGCGACCCCTCGAGGACATTGCCTTCATCACGCATGTGGGTG
ATCCGGTGCTGCTCACCGTAATTGCGGAAGAGGTTAAGGTGGGTCGTGAC
GAGCCGCCCGCACTGGCCTCCACGGTCCAATTGGCGTTCTTTCTGCCCGA
TCGCACCAATTCGCCGCCGTACTTCGAGAACGATCAGTAAAAGCTTTCTA
GACC

BS09189.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4655-PB 324 CG4655-RB 1..324 17..340 1595 99.6 Plus
CG4655-PA 1512 CG4655-RA 1315..1512 143..340 990 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
Cad86C-RG 7212 CG42601-RG 2187..2380 143..336 970 100 Plus
Cad86C-RF 6665 CG42601-RF 1531..1724 143..336 970 100 Plus
Cad86C-RE 6563 CG42601-RE 1447..1640 143..336 970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:13:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10841665..10841988 17..340 1605 99.7 Plus
Blast to na_te.dros performed 2015-02-11 11:13:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 5195..5231 179..215 104 75.7 Plus

BS09189.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:07 Download gff for BS09189.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4655-PB 1..324 17..340 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:09:34 Download gff for BS09189.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4655-PB 1..324 17..340 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:06:37 Download gff for BS09189.5prime
Subject Subject Range Query Range Percent Splice Strand
Cad86C-RE 1442..1643 136..339 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:43:04 Download gff for BS09189.5prime
Subject Subject Range Query Range Percent Splice Strand
Cad86C-RE 1442..1643 136..339 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:43:04 Download gff for BS09189.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10841665..10841988 17..340 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:06:37 Download gff for BS09189.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6667387..6667710 17..340 99   Plus

BS09189.complete Sequence

356 bp assembled on 2008-08-15

> BS09189.complete
GAAGTTATCAGTCGACATGGACTCTTTAGGATTATTTTACGTTGTATTAA
TTTTCAGGAACTCCATGCAATTAATCTTAAATATAGCTTACCCTTCCAAC
CTGTGCATTAAATCAATCAACGCTTCGGCTATTTGCATTACAGGCGAGAT
CTTCCTGATGCGACCCCTCGAGGACATTGCCTTCATCACGCATGTGGGTG
ATCCGGTGCTGCTCACCGTAATTGCGGAAGAGGTTAAGGTGGGTCGTGAC
GAGCCGCCCGCACTGGCCTCCACGGTCCAATTGGCGTTCTTTCTGCCCGA
TCGCACCAATTCGCCGCCGTACTTCGAGAACGATCAGTAAAAGCTTTCTA
GACCAT

BS09189.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
Cad86C-RG 3027 CG42601-PG 1267..1460 143..336 970 100 Plus
Cad86C-RF 5850 CG42601-PF 1267..1460 143..336 970 100 Plus
Cad86C-RE 5748 CG42601-PE 1183..1376 143..336 970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
Cad86C-RG 7212 CG42601-RG 2187..2380 143..336 970 100 Plus
Cad86C-RF 6665 CG42601-RF 1531..1724 143..336 970 100 Plus
Cad86C-RE 6563 CG42601-RE 1447..1640 143..336 970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10841665..10841988 17..340 1605 99.7 Plus
Blast to na_te.dros performed 2014-11-27 15:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 5195..5231 179..215 104 75.7 Plus

BS09189.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:54:27 Download gff for BS09189.complete
Subject Subject Range Query Range Percent Splice Strand
CG4655-RA 1310..1512 136..340 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:47 Download gff for BS09189.complete
Subject Subject Range Query Range Percent Splice Strand
Cad86C-RE 1442..1642 136..338 97   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:02:09 Download gff for BS09189.complete
Subject Subject Range Query Range Percent Splice Strand
CG4655-RA 1310..1510 136..338 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:06 Download gff for BS09189.complete
Subject Subject Range Query Range Percent Splice Strand
Cad86C-RE 1442..1642 136..338 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:06 Download gff for BS09189.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10841665..10841986 17..338 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:47 Download gff for BS09189.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6667387..6667708 17..338 99   Plus

BS09189.pep Sequence

Translation from 16 to 339

> BS09189.pep
MDSLGLFYVVLIFRNSMQLILNIAYPSNLCIKSINASAICITGEIFLMRP
LEDIAFITHVGDPVLLTVIAEEVKVGRDEPPALASTVQLAFFLPDRTNSP
PYFENDQ*

BS09189.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:42:32
Subject Length Description Subject Range Query Range Score Percent Strand
Cad86C-PG 1008 CG42601-PG 422..486 42..106 331 98.5 Plus
Cad86C-PE 1915 CG42601-PE 394..458 42..106 331 98.5 Plus
Cad86C-PD 1943 CG42601-PD 422..486 42..106 331 98.5 Plus
Cad86C-PC 1943 CG42601-PC 422..486 42..106 331 98.5 Plus
Cad86C-PF 1949 CG42601-PF 422..486 42..106 331 98.5 Plus