Clone Sequence Records
BS09195.5prime Sequence
820 bp (721 high quality bases) assembled on 2006-01-24
> BS09195.5prime
GAAGTTATCAGTCGACATGGATTCAAAACGCGCGGCCCTTGAATCCGGCG
ACGGTCCGGACGCCAAGCGCCTTGATACCACCGATGATCAAGACAAAGAA
GCGTCGGGGGGCGACGGCAGTCAGGTTATGCTGGCCAAACACGTAGCACC
CTACACGGGCCACGGATGTACTCCACCGATGGAGTCCTATTTGTTCGAAC
CGACTCCCGCCGGGAGTCAACTTCTGCCGTGGAAAACTAGCGTTGATTTG
GACAACGACGCCGAGCTGGAGAAGCCCACCAGTGACAAGAAACCCGACAC
TGCCAAGTTGTCCCGTCGGGAGCTGGCCAAAATGCGCCGTGAACACACAT
TAAGGGCCCTCGCCCTGGAACGCGAGTTGACCAACAAACCGGGGCAGACA
CCCGCTTCCGAAGTGTTGCTCGTCCGCTTTCCTGATCCCGAGATTACTGC
TCCCATGCTGGCAGGACTGTCCAAGGATATTCGGGATGTGGTCTTGCCCA
TTAGCGTGGCTCCACGATACTGTCTAGTGCATCTAAAGGCCGGTGCCGAT
GTGGAGGCCACCATCTGCGACATAAACAGGGTGCGCTTCGGTACGGGGCA
CCTTCGGGCGGAGCTTAAGCCGTTCTCCGATGAGGAGCAGGCCGAGTTCA
TTGATCCCTGTTCTCTGTATGTGGGCAACATACCGTTCAACATGACCACA
TCGGCCATAAAGGCCTATTTCGCCAACGCCATGCGCGTGGACATCGGAGT
GCTGAAGCGCGAGAAGCGCGCTCGCTACGCCTTTGTGCGTTACGCCTCAC
CTGACCAGACCATGGAAGCG
BS09195.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3691-PB | 1488 | Pof-RB | 1..804 | 17..820 | 4020 | 100 | Plus |
CG3691-PA | 1488 | Pof-RA | 1..804 | 17..820 | 4020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:57:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pof-RC | 1683 | CG3691-RC | 122..925 | 17..820 | 4020 | 100 | Plus |
Pof-RA | 1736 | CG3691-RA | 175..978 | 17..820 | 4020 | 100 | Plus |
Pof-RB | 1959 | CG3691-RB | 126..929 | 17..820 | 4020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:57:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24669902..24670428 | 294..820 | 2635 | 100 | Plus |
2R | 25286936 | 2R | 24669571..24669847 | 17..293 | 1385 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:57:49 has no hits.
BS09195.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:20 Download gff for
BS09195.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pof-PA | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:09:50 Download gff for
BS09195.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3691-PA | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:43:51 Download gff for
BS09195.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pof-RB | 126..929 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:55:20 Download gff for
BS09195.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pof-RB | 126..929 | 17..820 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:55:20 Download gff for
BS09195.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24669571..24669847 | 17..293 | 100 | -> | Plus |
2R | 24669902..24670428 | 294..820 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:43:51 Download gff for
BS09195.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20557094..20557370 | 17..293 | 100 | -> | Plus |
arm_2R | 20557425..20557951 | 294..820 | 100 | | Plus |
BS09195.3prime Sequence
924 bp (855 high quality bases) assembled on 2006-01-24
> BS09195.3prime
ATGGTCTAGAAAGCTTTTAAGGATCAGGATCGCGTTCCAGTTGAGCATAG
AGCTCCTCAAGTCTGTCATCCTTCTCGTACTCGTCAGCAGTCTTCATCGC
ACTAGTGCCTCGTCTGAAAGGACCCGTAAACAAGCGGCCAAAACACGATC
TTTTGGCTTTCTTCTGGCTGTCATCTTGAGCTTGTGTTGTCGGCTTGGTA
GCCGGTACGGGATCAGGGATGCCCAAATAGTCGCACTCTTTCTTAATGTC
ACGCATTAGGTGCACCGCATTGGATCCTAGTAAACAACCTGTGGGATTCA
CGCTCGGCTCTACTTTGGGTGTAAGGTCAGGTATAAATGTATCTTCTAAG
CTGTTCTGTCTAAATTGCAAACTTTTTATAATAGCGCCGTACTCGGCCAT
TTGACGCTTGAGCTTTTCAATCTCTCTTTCCTGTTCATTTATCTTCTTCT
TGCGCTTGCCGTCTTCCTTGCCGTTGCCACTGGAATCTGAGCAGTTATCG
CTGTCGCTAATTATGATAGACTCTAACGGCGGTGGAGATATGACCTTGCA
GTCAGTGTTGTCGTCGTCTCCATTTGGGGATTGCAGCGCCTGAAAGGAGG
TGGCGCACTGCACCATTGGCATCCCGGCGCGCTTCCGGAGTCGCCGATAG
CGGACTGTGAGAGTGCGGCTGTTCAGCGGTGAGTCGACCAGCTCCTTGAA
CGCTTCCATGGTCTGGTCAGGTGAGGCGTAACGCACAAAGGCGTAGCGAG
CGCGCTTCTCGCGCTTCAGCACTCCGATGTCCACGCGCATGGCGTTGGCG
AAATAGGCCTTTATGGCCGATGTGGTCATGTTGAACGGTATGTTGCCCAC
ATACAGAGAACAGGGATCAATGAACTCGGCCTGCTCCTCATCGGAGAACG
GCTTAAGCTCCGCCCGAAGGTGCC
BS09195.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3691-PB | 1488 | Pof-RB | 581..1488 | 924..17 | 4540 | 100 | Minus |
CG3691-PA | 1488 | Pof-RA | 581..1488 | 924..17 | 4540 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:23:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pof-RC | 1683 | CG3691-RC | 702..1609 | 924..17 | 4540 | 100 | Minus |
Pof-RA | 1736 | CG3691-RA | 755..1662 | 924..17 | 4540 | 100 | Minus |
Pof-RB | 1959 | CG3691-RB | 706..1613 | 924..17 | 4540 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:23:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24670205..24670786 | 924..343 | 2910 | 100 | Minus |
2R | 25286936 | 2R | 24670846..24671040 | 344..150 | 975 | 100 | Minus |
2R | 25286936 | 2R | 24671098..24671231 | 150..17 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:23:57 has no hits.
BS09195.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:19 Download gff for
BS09195.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pof-PA | 581..1488 | 17..924 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:09:49 Download gff for
BS09195.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3691-PA | 581..1488 | 17..924 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:38:55 Download gff for
BS09195.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pof-RB | 706..1619 | 9..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:57 Download gff for
BS09195.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pof-RB | 706..1619 | 9..924 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:57 Download gff for
BS09195.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24670205..24670786 | 343..924 | 100 | -> | Minus |
2R | 24670848..24671039 | 151..342 | 100 | -> | Minus |
2R | 24671098..24671237 | 9..150 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:38:55 Download gff for
BS09195.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20557728..20558309 | 343..924 | 100 | -> | Minus |
arm_2R | 20558371..20558562 | 151..342 | 100 | -> | Minus |
arm_2R | 20558621..20558760 | 9..150 | 97 | | Minus |
BS09195.complete Sequence
1520 bp (1520 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636373
> BS09195.complete
GAAGTTATCAGTCGACATGGATTCAAAACGCGCGGCCCTTGAATCCGGCG
ACGGTCCGGACGCCAAGCGCCTTGATACCACCGATGATCAAGACAAAGAA
GCGTCGGGGGGCGACGGCAGTCAGGTTATGCTGGCCAAACACGTAGCACC
CTACACGGGCCACGGATGTACTCCACCGATGGAGTCCTATTTGTTCGAAC
CGACTCCCGCCGGGAGTCAACTTCTGCCGTGGAAAACTAGCGTTGATTTG
GACAACGACGCCGAGCTGGAGAAGCCCACCAGTGACAAGAAACCCGACAC
TGCCAAGTTGTCCCGTCGGGAGCTGGCCAAAATGCGCCGTGAACACACAT
TAAGGGCCCTCGCCCTGGAACGCGAGTTGACCAACAAACCGGGGCAGACA
CCCGCTTCCGAAGTGTTGCTCGTCCGCTTTCCTGATCCCGAGATTACTGC
TCCCATGCTGGCAGGACTGTCCAAGGATATTCGGGATGTGGTCTTGCCCA
TTAGCGTGGCTCCACGATACTGTCTAGTGCATCTAAAGGCCGGTGCCGAT
GTGGAGGCCACCATCTGCGACATAAACAGGGTGCGCTTCGGTACGGGGCA
CCTTCGGGCGGAGCTTAAGCCGTTCTCCGATGAGGAGCAGGCCGAGTTCA
TTGATCCCTGTTCTCTGTATGTGGGCAACATACCGTTCAACATGACCACA
TCGGCCATAAAGGCCTATTTCGCCAACGCCATGCGCGTGGACATCGGAGT
GCTGAAGCGCGAGAAGCGCGCTCGCTACGCCTTTGTGCGTTACGCCTCAC
CTGACCAGACCATGGAAGCGTTCAAGGAGCTGGTCGACTCACCGCTGAAC
AGCCGCACTCTCACAGTCCGCTATCGGCGACTCCGGAAGCGCGCCGGGAT
GCCAATGGTGCAGTGCGCCACCTCCTTTCAGGCGCTGCAATCCCCAAATG
GAGACGACGACAACACTGACTGCAAGGTCATATCTCCACCGCCGTTAGAG
TCTATCATAATTAGCGACAGCGATAACTGCTCAGATTCCAGTGGCAACGG
CAAGGAAGACGGCAAGCGCAAGAAGAAGATAAATGAACAGGAAAGAGAGA
TTGAAAAGCTCAAGCGTCAAATGGCCGAGTACGGCGCTATTATAAAAAGT
TTGCAATTTAGACAGAACAGCTTAGAAGATACATTTATACCTGACCTTAC
ACCCAAAGTAGAGCCGAGCGTGAATCCCACAGGTTGTTTACTAGGATCCA
ATGCGGTGCACCTAATGCGTGACATTAAGAAAGAGTGCGACTATTTGGGC
ATCCCTGATCCCGTACCGGCTACCAAGCCGACAACACAAGCTCAAGATGA
CAGCCAGAAGAAAGCCAAAAGATCGTGTTTTGGCCGCTTGTTTACGGGTC
CTTTCAGACGAGGCACTAGTGCGATGAAGACTGCTGACGAGTACGAGAAG
GATGACAGACTTGAGGAGCTCTATGCTCAACTGGAACGCGATCCTGATCC
TTAAAAGCTTTCTAGACCAT
BS09195.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:00:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pof-RC | 1488 | CG3691-PC | 1..1488 | 17..1504 | 7440 | 100 | Plus |
Pof-RA | 1488 | CG3691-PA | 1..1488 | 17..1504 | 7440 | 100 | Plus |
Pof-RB | 1488 | CG3691-PB | 1..1488 | 17..1504 | 7440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pof-RC | 1683 | CG3691-RC | 122..1609 | 17..1504 | 7440 | 100 | Plus |
Pof-RA | 1736 | CG3691-RA | 175..1662 | 17..1504 | 7440 | 100 | Plus |
Pof-RB | 1959 | CG3691-RB | 126..1613 | 17..1504 | 7440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24669902..24670786 | 294..1178 | 4425 | 100 | Plus |
2R | 25286936 | 2R | 24669571..24669847 | 17..293 | 1385 | 100 | Plus |
2R | 25286936 | 2R | 24670846..24671040 | 1177..1371 | 975 | 100 | Plus |
2R | 25286936 | 2R | 24671098..24671231 | 1371..1504 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:00:11 has no hits.
BS09195.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:46 Download gff for
BS09195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pof-RA | 1..1488 | 17..1504 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:16 Download gff for
BS09195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pof-RA | 156..1649 | 17..1512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:41:41 Download gff for
BS09195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pof-RB | 126..1611 | 17..1502 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:47 Download gff for
BS09195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pof-RA | 156..1649 | 17..1512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:03 Download gff for
BS09195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pof-RB | 126..1611 | 17..1502 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:03 Download gff for
BS09195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24669571..24669847 | 17..293 | 100 | -> | Plus |
2R | 24669902..24670786 | 294..1178 | 100 | -> | Plus |
2R | 24670848..24671039 | 1179..1370 | 100 | -> | Plus |
2R | 24671098..24671229 | 1371..1502 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:41:41 Download gff for
BS09195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20557094..20557370 | 17..293 | 100 | -> | Plus |
arm_2R | 20557425..20558309 | 294..1178 | 100 | -> | Plus |
arm_2R | 20558371..20558562 | 1179..1370 | 100 | -> | Plus |
arm_2R | 20558621..20558752 | 1371..1502 | 100 | | Plus |
BS09195.pep Sequence
Translation from 16 to 1503
> BS09195.pep
MDSKRAALESGDGPDAKRLDTTDDQDKEASGGDGSQVMLAKHVAPYTGHG
CTPPMESYLFEPTPAGSQLLPWKTSVDLDNDAELEKPTSDKKPDTAKLSR
RELAKMRREHTLRALALERELTNKPGQTPASEVLLVRFPDPEITAPMLAG
LSKDIRDVVLPISVAPRYCLVHLKAGADVEATICDINRVRFGTGHLRAEL
KPFSDEEQAEFIDPCSLYVGNIPFNMTTSAIKAYFANAMRVDIGVLKREK
RARYAFVRYASPDQTMEAFKELVDSPLNSRTLTVRYRRLRKRAGMPMVQC
ATSFQALQSPNGDDDNTDCKVISPPPLESIIISDSDNCSDSSGNGKEDGK
RKKKINEQEREIEKLKRQMAEYGAIIKSLQFRQNSLEDTFIPDLTPKVEP
SVNPTGCLLGSNAVHLMRDIKKECDYLGIPDPVPATKPTTQAQDDSQKKA
KRSCFGRLFTGPFRRGTSAMKTADEYEKDDRLEELYAQLERDPDP*
BS09195.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pof-PC | 495 | CG3691-PC | 1..495 | 1..495 | 2576 | 100 | Plus |
Pof-PA | 495 | CG3691-PA | 1..495 | 1..495 | 2576 | 100 | Plus |
Pof-PB | 495 | CG3691-PB | 1..495 | 1..495 | 2576 | 100 | Plus |