Clone BS09195 Report

Search the DGRC for BS09195

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:91
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptPof-RA
Protein status:BS09195.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09195.5prime Sequence

820 bp (721 high quality bases) assembled on 2006-01-24

> BS09195.5prime
GAAGTTATCAGTCGACATGGATTCAAAACGCGCGGCCCTTGAATCCGGCG
ACGGTCCGGACGCCAAGCGCCTTGATACCACCGATGATCAAGACAAAGAA
GCGTCGGGGGGCGACGGCAGTCAGGTTATGCTGGCCAAACACGTAGCACC
CTACACGGGCCACGGATGTACTCCACCGATGGAGTCCTATTTGTTCGAAC
CGACTCCCGCCGGGAGTCAACTTCTGCCGTGGAAAACTAGCGTTGATTTG
GACAACGACGCCGAGCTGGAGAAGCCCACCAGTGACAAGAAACCCGACAC
TGCCAAGTTGTCCCGTCGGGAGCTGGCCAAAATGCGCCGTGAACACACAT
TAAGGGCCCTCGCCCTGGAACGCGAGTTGACCAACAAACCGGGGCAGACA
CCCGCTTCCGAAGTGTTGCTCGTCCGCTTTCCTGATCCCGAGATTACTGC
TCCCATGCTGGCAGGACTGTCCAAGGATATTCGGGATGTGGTCTTGCCCA
TTAGCGTGGCTCCACGATACTGTCTAGTGCATCTAAAGGCCGGTGCCGAT
GTGGAGGCCACCATCTGCGACATAAACAGGGTGCGCTTCGGTACGGGGCA
CCTTCGGGCGGAGCTTAAGCCGTTCTCCGATGAGGAGCAGGCCGAGTTCA
TTGATCCCTGTTCTCTGTATGTGGGCAACATACCGTTCAACATGACCACA
TCGGCCATAAAGGCCTATTTCGCCAACGCCATGCGCGTGGACATCGGAGT
GCTGAAGCGCGAGAAGCGCGCTCGCTACGCCTTTGTGCGTTACGCCTCAC
CTGACCAGACCATGGAAGCG

BS09195.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3691-PB 1488 Pof-RB 1..804 17..820 4020 100 Plus
CG3691-PA 1488 Pof-RA 1..804 17..820 4020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:57:51
Subject Length Description Subject Range Query Range Score Percent Strand
Pof-RC 1683 CG3691-RC 122..925 17..820 4020 100 Plus
Pof-RA 1736 CG3691-RA 175..978 17..820 4020 100 Plus
Pof-RB 1959 CG3691-RB 126..929 17..820 4020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24669902..24670428 294..820 2635 100 Plus
2R 25286936 2R 24669571..24669847 17..293 1385 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:57:49 has no hits.

BS09195.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:20 Download gff for BS09195.5prime
Subject Subject Range Query Range Percent Splice Strand
Pof-PA 1..804 17..820 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:09:50 Download gff for BS09195.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3691-PA 1..804 17..820 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:43:51 Download gff for BS09195.5prime
Subject Subject Range Query Range Percent Splice Strand
Pof-RB 126..929 17..820 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:55:20 Download gff for BS09195.5prime
Subject Subject Range Query Range Percent Splice Strand
Pof-RB 126..929 17..820 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:55:20 Download gff for BS09195.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24669571..24669847 17..293 100 -> Plus
2R 24669902..24670428 294..820 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:43:51 Download gff for BS09195.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20557094..20557370 17..293 100 -> Plus
arm_2R 20557425..20557951 294..820 100   Plus

BS09195.3prime Sequence

924 bp (855 high quality bases) assembled on 2006-01-24

> BS09195.3prime
ATGGTCTAGAAAGCTTTTAAGGATCAGGATCGCGTTCCAGTTGAGCATAG
AGCTCCTCAAGTCTGTCATCCTTCTCGTACTCGTCAGCAGTCTTCATCGC
ACTAGTGCCTCGTCTGAAAGGACCCGTAAACAAGCGGCCAAAACACGATC
TTTTGGCTTTCTTCTGGCTGTCATCTTGAGCTTGTGTTGTCGGCTTGGTA
GCCGGTACGGGATCAGGGATGCCCAAATAGTCGCACTCTTTCTTAATGTC
ACGCATTAGGTGCACCGCATTGGATCCTAGTAAACAACCTGTGGGATTCA
CGCTCGGCTCTACTTTGGGTGTAAGGTCAGGTATAAATGTATCTTCTAAG
CTGTTCTGTCTAAATTGCAAACTTTTTATAATAGCGCCGTACTCGGCCAT
TTGACGCTTGAGCTTTTCAATCTCTCTTTCCTGTTCATTTATCTTCTTCT
TGCGCTTGCCGTCTTCCTTGCCGTTGCCACTGGAATCTGAGCAGTTATCG
CTGTCGCTAATTATGATAGACTCTAACGGCGGTGGAGATATGACCTTGCA
GTCAGTGTTGTCGTCGTCTCCATTTGGGGATTGCAGCGCCTGAAAGGAGG
TGGCGCACTGCACCATTGGCATCCCGGCGCGCTTCCGGAGTCGCCGATAG
CGGACTGTGAGAGTGCGGCTGTTCAGCGGTGAGTCGACCAGCTCCTTGAA
CGCTTCCATGGTCTGGTCAGGTGAGGCGTAACGCACAAAGGCGTAGCGAG
CGCGCTTCTCGCGCTTCAGCACTCCGATGTCCACGCGCATGGCGTTGGCG
AAATAGGCCTTTATGGCCGATGTGGTCATGTTGAACGGTATGTTGCCCAC
ATACAGAGAACAGGGATCAATGAACTCGGCCTGCTCCTCATCGGAGAACG
GCTTAAGCTCCGCCCGAAGGTGCC

BS09195.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3691-PB 1488 Pof-RB 581..1488 924..17 4540 100 Minus
CG3691-PA 1488 Pof-RA 581..1488 924..17 4540 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:23:58
Subject Length Description Subject Range Query Range Score Percent Strand
Pof-RC 1683 CG3691-RC 702..1609 924..17 4540 100 Minus
Pof-RA 1736 CG3691-RA 755..1662 924..17 4540 100 Minus
Pof-RB 1959 CG3691-RB 706..1613 924..17 4540 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:23:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24670205..24670786 924..343 2910 100 Minus
2R 25286936 2R 24670846..24671040 344..150 975 100 Minus
2R 25286936 2R 24671098..24671231 150..17 670 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:23:57 has no hits.

BS09195.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:19 Download gff for BS09195.3prime
Subject Subject Range Query Range Percent Splice Strand
Pof-PA 581..1488 17..924 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:09:49 Download gff for BS09195.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3691-PA 581..1488 17..924 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:38:55 Download gff for BS09195.3prime
Subject Subject Range Query Range Percent Splice Strand
Pof-RB 706..1619 9..924 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:57 Download gff for BS09195.3prime
Subject Subject Range Query Range Percent Splice Strand
Pof-RB 706..1619 9..924 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:57 Download gff for BS09195.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24670205..24670786 343..924 100 -> Minus
2R 24670848..24671039 151..342 100 -> Minus
2R 24671098..24671237 9..150 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:38:55 Download gff for BS09195.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20557728..20558309 343..924 100 -> Minus
arm_2R 20558371..20558562 151..342 100 -> Minus
arm_2R 20558621..20558760 9..150 97   Minus

BS09195.complete Sequence

1520 bp (1520 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636373

> BS09195.complete
GAAGTTATCAGTCGACATGGATTCAAAACGCGCGGCCCTTGAATCCGGCG
ACGGTCCGGACGCCAAGCGCCTTGATACCACCGATGATCAAGACAAAGAA
GCGTCGGGGGGCGACGGCAGTCAGGTTATGCTGGCCAAACACGTAGCACC
CTACACGGGCCACGGATGTACTCCACCGATGGAGTCCTATTTGTTCGAAC
CGACTCCCGCCGGGAGTCAACTTCTGCCGTGGAAAACTAGCGTTGATTTG
GACAACGACGCCGAGCTGGAGAAGCCCACCAGTGACAAGAAACCCGACAC
TGCCAAGTTGTCCCGTCGGGAGCTGGCCAAAATGCGCCGTGAACACACAT
TAAGGGCCCTCGCCCTGGAACGCGAGTTGACCAACAAACCGGGGCAGACA
CCCGCTTCCGAAGTGTTGCTCGTCCGCTTTCCTGATCCCGAGATTACTGC
TCCCATGCTGGCAGGACTGTCCAAGGATATTCGGGATGTGGTCTTGCCCA
TTAGCGTGGCTCCACGATACTGTCTAGTGCATCTAAAGGCCGGTGCCGAT
GTGGAGGCCACCATCTGCGACATAAACAGGGTGCGCTTCGGTACGGGGCA
CCTTCGGGCGGAGCTTAAGCCGTTCTCCGATGAGGAGCAGGCCGAGTTCA
TTGATCCCTGTTCTCTGTATGTGGGCAACATACCGTTCAACATGACCACA
TCGGCCATAAAGGCCTATTTCGCCAACGCCATGCGCGTGGACATCGGAGT
GCTGAAGCGCGAGAAGCGCGCTCGCTACGCCTTTGTGCGTTACGCCTCAC
CTGACCAGACCATGGAAGCGTTCAAGGAGCTGGTCGACTCACCGCTGAAC
AGCCGCACTCTCACAGTCCGCTATCGGCGACTCCGGAAGCGCGCCGGGAT
GCCAATGGTGCAGTGCGCCACCTCCTTTCAGGCGCTGCAATCCCCAAATG
GAGACGACGACAACACTGACTGCAAGGTCATATCTCCACCGCCGTTAGAG
TCTATCATAATTAGCGACAGCGATAACTGCTCAGATTCCAGTGGCAACGG
CAAGGAAGACGGCAAGCGCAAGAAGAAGATAAATGAACAGGAAAGAGAGA
TTGAAAAGCTCAAGCGTCAAATGGCCGAGTACGGCGCTATTATAAAAAGT
TTGCAATTTAGACAGAACAGCTTAGAAGATACATTTATACCTGACCTTAC
ACCCAAAGTAGAGCCGAGCGTGAATCCCACAGGTTGTTTACTAGGATCCA
ATGCGGTGCACCTAATGCGTGACATTAAGAAAGAGTGCGACTATTTGGGC
ATCCCTGATCCCGTACCGGCTACCAAGCCGACAACACAAGCTCAAGATGA
CAGCCAGAAGAAAGCCAAAAGATCGTGTTTTGGCCGCTTGTTTACGGGTC
CTTTCAGACGAGGCACTAGTGCGATGAAGACTGCTGACGAGTACGAGAAG
GATGACAGACTTGAGGAGCTCTATGCTCAACTGGAACGCGATCCTGATCC
TTAAAAGCTTTCTAGACCAT

BS09195.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:00:13
Subject Length Description Subject Range Query Range Score Percent Strand
Pof-RC 1488 CG3691-PC 1..1488 17..1504 7440 100 Plus
Pof-RA 1488 CG3691-PA 1..1488 17..1504 7440 100 Plus
Pof-RB 1488 CG3691-PB 1..1488 17..1504 7440 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
Pof-RC 1683 CG3691-RC 122..1609 17..1504 7440 100 Plus
Pof-RA 1736 CG3691-RA 175..1662 17..1504 7440 100 Plus
Pof-RB 1959 CG3691-RB 126..1613 17..1504 7440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24669902..24670786 294..1178 4425 100 Plus
2R 25286936 2R 24669571..24669847 17..293 1385 100 Plus
2R 25286936 2R 24670846..24671040 1177..1371 975 100 Plus
2R 25286936 2R 24671098..24671231 1371..1504 670 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:00:11 has no hits.

BS09195.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:46 Download gff for BS09195.complete
Subject Subject Range Query Range Percent Splice Strand
Pof-RA 1..1488 17..1504 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:16 Download gff for BS09195.complete
Subject Subject Range Query Range Percent Splice Strand
Pof-RA 156..1649 17..1512 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:41:41 Download gff for BS09195.complete
Subject Subject Range Query Range Percent Splice Strand
Pof-RB 126..1611 17..1502 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:47 Download gff for BS09195.complete
Subject Subject Range Query Range Percent Splice Strand
Pof-RA 156..1649 17..1512 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:03 Download gff for BS09195.complete
Subject Subject Range Query Range Percent Splice Strand
Pof-RB 126..1611 17..1502 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:03 Download gff for BS09195.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24669571..24669847 17..293 100 -> Plus
2R 24669902..24670786 294..1178 100 -> Plus
2R 24670848..24671039 1179..1370 100 -> Plus
2R 24671098..24671229 1371..1502 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:41:41 Download gff for BS09195.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20557094..20557370 17..293 100 -> Plus
arm_2R 20557425..20558309 294..1178 100 -> Plus
arm_2R 20558371..20558562 1179..1370 100 -> Plus
arm_2R 20558621..20558752 1371..1502 100   Plus

BS09195.pep Sequence

Translation from 16 to 1503

> BS09195.pep
MDSKRAALESGDGPDAKRLDTTDDQDKEASGGDGSQVMLAKHVAPYTGHG
CTPPMESYLFEPTPAGSQLLPWKTSVDLDNDAELEKPTSDKKPDTAKLSR
RELAKMRREHTLRALALERELTNKPGQTPASEVLLVRFPDPEITAPMLAG
LSKDIRDVVLPISVAPRYCLVHLKAGADVEATICDINRVRFGTGHLRAEL
KPFSDEEQAEFIDPCSLYVGNIPFNMTTSAIKAYFANAMRVDIGVLKREK
RARYAFVRYASPDQTMEAFKELVDSPLNSRTLTVRYRRLRKRAGMPMVQC
ATSFQALQSPNGDDDNTDCKVISPPPLESIIISDSDNCSDSSGNGKEDGK
RKKKINEQEREIEKLKRQMAEYGAIIKSLQFRQNSLEDTFIPDLTPKVEP
SVNPTGCLLGSNAVHLMRDIKKECDYLGIPDPVPATKPTTQAQDDSQKKA
KRSCFGRLFTGPFRRGTSAMKTADEYEKDDRLEELYAQLERDPDP*

BS09195.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
Pof-PC 495 CG3691-PC 1..495 1..495 2576 100 Plus
Pof-PA 495 CG3691-PA 1..495 1..495 2576 100 Plus
Pof-PB 495 CG3691-PB 1..495 1..495 2576 100 Plus