Clone BS09205 Report

Search the DGRC for BS09205

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:92
Well:5
Vector:pDNR-Dual
Associated Gene/Transcriptmag-RA
Protein status:BS09205.pep: full length peptide match
Sequenced Size:1232

Clone Sequence Records

BS09205.3prime Sequence

979 bp (880 high quality bases) assembled on 2006-01-29

> BS09205.3prime
ATGGTCTAGAAAGCTTCTAGCGACCTTCGTAGGAGTTAATGCGTTCGATG
ATCGGATCGTTGACCAGCTCCTTCATGTTCTTGGCGATGATGAAGTCCAA
GTGGTTGAAACTCTGGACGGGCACACGGTAGTCCTCCGTCAGGTGCGGGA
AGTTCTCCACCAGGGTATTGACGTCTTCGGGTCCGCAAAGGGCATCGTTG
GTGCTGGAGTACAAGTGGGTGGGTGCGACGATCTTGCTGAGATCGTAATC
TGGAGGCAGATCCTGGCCATACAGCTCGTTGTTCTTCTTTGTGCCCCAGT
CGTACTGGCGGAACTTGAGGGACTTCCATAGCTGCAGGTAGTGGATGCCC
TGGTTGCTAGAGGATCCAGCCGGATGGGTCTCGATCAGGACGCTCATGGA
GCTCGCATTGGCATTAACGTATCCACCATTGGCAAACATTATGAAGGCGT
TGTTGCAAATCGTGTTGGATAGATGGCAACTGTTGTCGACCAATCGGTTA
ACCAGGTTGTTGTTCGGAATCAGTTCGGTGTCCACCAGCAGTTGGTTCCA
GATGCCGCCGGGTGTACCCACCAGGGGACCCAGGGCATTGAAGATGAAGG
AGGTTCCGTGCTCGAAGAAGGCACATGGAGCCAGCAAATGACCGGACTTA
ATGAGGGCATTGTACTCCGGTCGCTCGGAAAGCATCACCAGGTACACGGT
GGTTCCTTGCGAGTGTCCGGCGTAGTGTATCTGATCGAAGCCGGTATCCG
CCAGGATGTAGTCGATCATGGCGGGGATGTCGATGGTGCCGATTTCGTGC
CAGTCGAAGTGCCAGAACTTGTGGCTGTTCAGCGAGATGATGATGTTGTT
CCGCGAGTAGATGTTACCACGGGCATTGCCCAGCCACACATCGTATCCGG
CATCCGCGAGCAGGTAGGCCAGGGAGTTGTCCGGTCCGGAGGACAGCCAG
CAGTCCGAGTTACTGAACAATCCGTGCTG

BS09205.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5932-PA 1200 CG5932-RA 238..1200 979..17 4815 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:03:42
Subject Length Description Subject Range Query Range Score Percent Strand
mag-RA 1477 CG5932-RA 259..1223 979..15 4825 100 Minus
Lip3-RA 1434 CG8823-RA 435..505 925..855 220 87.3 Minus
CG3635-RC 1301 CG3635-RC 393..464 922..851 195 84.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 05:03:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20460941..20461516 979..404 2880 100 Minus
3L 28110227 3L 20461631..20462020 404..15 1950 100 Minus
3R 32079331 3R 13371246..13371316 855..925 220 87.3 Plus
2L 23513712 2L 22182942..22183013 922..851 195 84.7 Minus
3R 32079331 3R 25901020..25901080 914..854 185 86.9 Minus
Blast to na_te.dros performed on 2015-02-01 05:03:39 has no hits.

BS09205.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:29 Download gff for BS09205.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5932-PA 238..1200 17..979 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:10:04 Download gff for BS09205.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5932-PA 238..1200 17..979 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:11:34 Download gff for BS09205.3prime
Subject Subject Range Query Range Percent Splice Strand
mag-RA 259..1223 15..979 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:52:05 Download gff for BS09205.3prime
Subject Subject Range Query Range Percent Splice Strand
mag-RA 259..1223 15..979 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:52:05 Download gff for BS09205.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20460941..20461516 404..979 100 -> Minus
3L 20461632..20462020 15..403 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:11:34 Download gff for BS09205.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20454041..20454616 404..979 100 -> Minus
arm_3L 20454732..20455120 15..403 100   Minus

BS09205.5prime Sequence

879 bp (819 high quality bases) assembled on 2006-01-28

> BS09205.5prime
GAAGTTATCAGTCGACATGAATCCTATCTTCTGCGCACTACTGTTCAGCT
TGGTGGCGGGTCTAGTCCTCGCCGAGAAGTCGGACTATTGTCTGAGCGAG
ATCGTCAAGTCGGACGAGAGGATCCGTTCGCACGGATATCCCACGGAGAC
TCACGAGGTGACCACCCAGGATGGCTATGTGCTGACCCTGTTCCGCATCC
CGTACTCCCACAAGCTGAAGAACCAGAACGAGAAGCGACCGCCAATCCTG
CTGCAGCACGGATTGTTCAGTAACTCGGACTGCTGGCTGTCCTCCGGACC
GGACAACTCCCTGGCCTACCTGCTCGCGGATGCCGGATACGATGTGTGGC
TGGGCAATGCCCGTGGTAACATCTACTCGCGGAACAACATCATCATCTCG
CTGAACAGCCACAAGTTCTGGCACTTCGACTGGCACGAAATCGGCACCAT
CGACATCCCCGCCATGATCGACTACATCCTGGCGGATACCGGCTTCGATC
AGATACACTACGCCGGACACTCGCAAGGAACCACCGTGTACCTGGTGATG
CTTTCCGAGCGACCGGAGTACAATGCCCTCATTAAGTCCGGTCATTTGCT
GGCTCCATGTGCCTTCTTCGAGCACGGAACCTCCTTCATCTTCAATGCCC
TGGGTCCCCTGGTGGGTACACCCGGCGGCATCTGGAACCAACTGCTGGTG
GACACCGAACTGATTCCGAACAACAACCTGGTTAACCGATTGGTCGACAA
CAGTTGCCATCTATCCAACACGATTTGCAACAACGCCTTCATAATGTTTG
CCAATGGTGGATACGTTAATGCCAATGCGAGCTCCATGAGCGTCCTGATC
GAGACCCATCCGGCTGGATCCTCTAGCAA

BS09205.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5932-PA 1200 CG5932-RA 1..863 17..879 4290 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
mag-RA 1477 CG5932-RA 22..884 17..879 4300 99.9 Plus
Lip3-RA 1434 CG8823-RA 435..505 308..378 220 87.3 Plus
CG3635-RC 1301 CG3635-RC 393..464 311..382 195 84.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20460704..20461516 17..829 4050 99.9 Plus
3L 28110227 3L 20461631..20461681 829..879 255 100 Plus
3R 32079331 3R 13371246..13371316 378..308 220 87.3 Minus
2L 23513712 2L 22182942..22183013 311..382 195 84.7 Plus
3R 32079331 3R 25901020..25901080 319..379 185 86.9 Plus
Blast to na_te.dros performed 2015-02-12 04:38:46
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 7745..7819 430..502 108 64 Plus

BS09205.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:30 Download gff for BS09205.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5932-PA 1..861 17..877 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:10:05 Download gff for BS09205.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5932-PA 1..861 17..877 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:51:05 Download gff for BS09205.5prime
Subject Subject Range Query Range Percent Splice Strand
mag-RA 22..882 17..877 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:10:20 Download gff for BS09205.5prime
Subject Subject Range Query Range Percent Splice Strand
mag-RA 22..882 17..877 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:10:20 Download gff for BS09205.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20460704..20461516 17..829 99 -> Plus
3L 20461632..20461679 830..877 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:51:05 Download gff for BS09205.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20453804..20454616 17..829 99 -> Plus
arm_3L 20454732..20454779 830..877 100   Plus

BS09205.complete Sequence

1232 bp assembled on 2009-02-12

> BS09205.complete
GAAGTTATCAGTCGACATGAATCCTATCTTCTGCGCACTACTGTTCAGCT
TGGTGGCGGGTCTAGTCCTCGCCGAGAAGTCGGACTATTGTCTGAGCGAG
ATCGTCAAGTCGGACGAGAGGATCCGTTCGCACGGATATCCCACGGAGAC
TCACGAGGTGACCACCCAGGATGGCTATGTGCTGACCCTGTTCCGCATCC
CGTACTCCCACAAGCTGAAGAACCAGAACGAGAAGCGACCGCCAATCCTG
CTGCAGCACGGATTGTTCAGTAACTCGGACTGCTGGCTGTCCTCCGGACC
GGACAACTCCCTGGCCTACCTGCTCGCGGATGCCGGATACGATGTGTGGC
TGGGCAATGCCCGTGGTAACATCTACTCGCGGAACAACATCATCATCTCG
CTGAACAGCCACAAGTTCTGGCACTTCGACTGGCACGAAATCGGCACCAT
CGACATCCCCGCCATGATCGACTACATCCTGGCGGATACCGGCTTCGATC
AGATACACTACGCCGGACACTCGCAAGGAACCACCGTGTACCTGGTGATG
CTTTCCGAGCGACCGGAGTACAATGCCCTCATTAAGTCCGGTCATTTGCT
GGCTCCATGTGCCTTCTTCGAGCACGGAACCTCCTTCATCTTCAATGCCC
TGGGTCCCCTGGTGGGTACACCCGGCGGCATCTGGAACCAACTGCTGGTG
GACACCGAACTGATTCCGAACAACAACCTGGTTAACCGATTGGTCGACAA
CAGTTGCCATCTATCCAACACGATTTGCAACAACGCCTTCATAATGTTTG
CCAATGGTGGATACGTTAATGCCAATGCGAGCTCCATGAGCGTCCTGATC
GAGACCCATCCGGCTGGATCCTCTAGCAACCAGGGCATCCACTACCTGCA
GCTATGGAAGTCCCTCAAGTTCCGCCAGTACGACTGGGGCACAAAGAAGA
ACAACGAGCTGTATGGCCAGGATCTGCCTCCAGATTACGATCTCAGCAAG
ATCGTCGCACCCACCCACTTGTACTCCAGCACCAACGATGCCCTTTGCGG
ACCCGAAGACGTCAATACCCTGGTGGAGAACTTCCCGCACCTGACGGAGG
ACTACCGTGTGCCCGTCCAGAGTTTCAACCACTTGGACTTCATCATCGCC
AAGAACATGAAGGAGCTGGTCAACGATCCGATCATCGAACGCATTAACTC
CTACGAAGGTCGCTAGAAGCTTTCTAGACCAT

BS09205.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:21:35
Subject Length Description Subject Range Query Range Score Percent Strand
mag-RA 1200 CG5932-PA 1..1200 17..1216 5985 99.9 Plus
Lip3-RA 1185 CG8823-PA 277..347 308..378 220 87.3 Plus
CG3635-RC 906 CG3635-PC 358..429 311..382 195 84.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
mag-RA 1477 CG5932-RA 22..1223 17..1218 5995 99.9 Plus
Lip3-RA 1434 CG8823-RA 435..505 308..378 220 87.3 Plus
CG3635-RC 1301 CG3635-RC 393..464 311..382 195 84.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:21:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20460704..20461516 17..829 4050 99.9 Plus
3L 28110227 3L 20461631..20462020 829..1218 1950 100 Plus
3R 32079331 3R 13371246..13371316 378..308 220 87.3 Minus
2L 23513712 2L 22182942..22183013 311..382 195 84.7 Plus
3R 32079331 3R 25901020..25901080 319..379 185 86.9 Plus
Blast to na_te.dros performed on 2014-11-27 10:21:34 has no hits.

BS09205.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:31 Download gff for BS09205.complete
Subject Subject Range Query Range Percent Splice Strand
CG5932-RA 6..1205 17..1216 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:44 Download gff for BS09205.complete
Subject Subject Range Query Range Percent Splice Strand
mag-RA 22..1221 17..1216 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:19:45 Download gff for BS09205.complete
Subject Subject Range Query Range Percent Splice Strand
mag-RA 22..1221 17..1216 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:19:45 Download gff for BS09205.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20460704..20461516 17..829 99 -> Plus
3L 20461632..20462018 830..1216 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:44 Download gff for BS09205.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20453804..20454616 17..829 99 -> Plus
arm_3L 20454732..20455118 830..1216 100   Plus

BS09205.pep Sequence

Translation from 16 to 1215

> BS09205.pep
MNPIFCALLFSLVAGLVLAEKSDYCLSEIVKSDERIRSHGYPTETHEVTT
QDGYVLTLFRIPYSHKLKNQNEKRPPILLQHGLFSNSDCWLSSGPDNSLA
YLLADAGYDVWLGNARGNIYSRNNIIISLNSHKFWHFDWHEIGTIDIPAM
IDYILADTGFDQIHYAGHSQGTTVYLVMLSERPEYNALIKSGHLLAPCAF
FEHGTSFIFNALGPLVGTPGGIWNQLLVDTELIPNNNLVNRLVDNSCHLS
NTICNNAFIMFANGGYVNANASSMSVLIETHPAGSSSNQGIHYLQLWKSL
KFRQYDWGTKKNNELYGQDLPPDYDLSKIVAPTHLYSSTNDALCGPEDVN
TLVENFPHLTEDYRVPVQSFNHLDFIIAKNMKELVNDPIIERINSYEGR*

BS09205.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
mag-PA 399 CG5932-PA 1..399 1..399 2146 100 Plus
CG2772-PA 416 CG2772-PA 26..410 23..399 894 46.4 Plus
CG31091-PC 424 CG31091-PC 59..424 36..399 830 45.1 Plus
CG31091-PB 424 CG31091-PB 59..424 36..399 830 45.1 Plus
CG31089-PA 421 CG31089-PA 42..415 26..397 813 43.4 Plus