Clone Sequence Records
BS09205.3prime Sequence
979 bp (880 high quality bases) assembled on 2006-01-29
> BS09205.3prime
ATGGTCTAGAAAGCTTCTAGCGACCTTCGTAGGAGTTAATGCGTTCGATG
ATCGGATCGTTGACCAGCTCCTTCATGTTCTTGGCGATGATGAAGTCCAA
GTGGTTGAAACTCTGGACGGGCACACGGTAGTCCTCCGTCAGGTGCGGGA
AGTTCTCCACCAGGGTATTGACGTCTTCGGGTCCGCAAAGGGCATCGTTG
GTGCTGGAGTACAAGTGGGTGGGTGCGACGATCTTGCTGAGATCGTAATC
TGGAGGCAGATCCTGGCCATACAGCTCGTTGTTCTTCTTTGTGCCCCAGT
CGTACTGGCGGAACTTGAGGGACTTCCATAGCTGCAGGTAGTGGATGCCC
TGGTTGCTAGAGGATCCAGCCGGATGGGTCTCGATCAGGACGCTCATGGA
GCTCGCATTGGCATTAACGTATCCACCATTGGCAAACATTATGAAGGCGT
TGTTGCAAATCGTGTTGGATAGATGGCAACTGTTGTCGACCAATCGGTTA
ACCAGGTTGTTGTTCGGAATCAGTTCGGTGTCCACCAGCAGTTGGTTCCA
GATGCCGCCGGGTGTACCCACCAGGGGACCCAGGGCATTGAAGATGAAGG
AGGTTCCGTGCTCGAAGAAGGCACATGGAGCCAGCAAATGACCGGACTTA
ATGAGGGCATTGTACTCCGGTCGCTCGGAAAGCATCACCAGGTACACGGT
GGTTCCTTGCGAGTGTCCGGCGTAGTGTATCTGATCGAAGCCGGTATCCG
CCAGGATGTAGTCGATCATGGCGGGGATGTCGATGGTGCCGATTTCGTGC
CAGTCGAAGTGCCAGAACTTGTGGCTGTTCAGCGAGATGATGATGTTGTT
CCGCGAGTAGATGTTACCACGGGCATTGCCCAGCCACACATCGTATCCGG
CATCCGCGAGCAGGTAGGCCAGGGAGTTGTCCGGTCCGGAGGACAGCCAG
CAGTCCGAGTTACTGAACAATCCGTGCTG
BS09205.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5932-PA | 1200 | CG5932-RA | 238..1200 | 979..17 | 4815 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:03:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mag-RA | 1477 | CG5932-RA | 259..1223 | 979..15 | 4825 | 100 | Minus |
Lip3-RA | 1434 | CG8823-RA | 435..505 | 925..855 | 220 | 87.3 | Minus |
CG3635-RC | 1301 | CG3635-RC | 393..464 | 922..851 | 195 | 84.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 05:03:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20460941..20461516 | 979..404 | 2880 | 100 | Minus |
3L | 28110227 | 3L | 20461631..20462020 | 404..15 | 1950 | 100 | Minus |
3R | 32079331 | 3R | 13371246..13371316 | 855..925 | 220 | 87.3 | Plus |
2L | 23513712 | 2L | 22182942..22183013 | 922..851 | 195 | 84.7 | Minus |
3R | 32079331 | 3R | 25901020..25901080 | 914..854 | 185 | 86.9 | Minus |
Blast to na_te.dros performed on 2015-02-01 05:03:39 has no hits.
BS09205.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:29 Download gff for
BS09205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5932-PA | 238..1200 | 17..979 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:10:04 Download gff for
BS09205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5932-PA | 238..1200 | 17..979 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:11:34 Download gff for
BS09205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mag-RA | 259..1223 | 15..979 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:52:05 Download gff for
BS09205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mag-RA | 259..1223 | 15..979 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:52:05 Download gff for
BS09205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20460941..20461516 | 404..979 | 100 | -> | Minus |
3L | 20461632..20462020 | 15..403 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:11:34 Download gff for
BS09205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20454041..20454616 | 404..979 | 100 | -> | Minus |
arm_3L | 20454732..20455120 | 15..403 | 100 | | Minus |
BS09205.5prime Sequence
879 bp (819 high quality bases) assembled on 2006-01-28
> BS09205.5prime
GAAGTTATCAGTCGACATGAATCCTATCTTCTGCGCACTACTGTTCAGCT
TGGTGGCGGGTCTAGTCCTCGCCGAGAAGTCGGACTATTGTCTGAGCGAG
ATCGTCAAGTCGGACGAGAGGATCCGTTCGCACGGATATCCCACGGAGAC
TCACGAGGTGACCACCCAGGATGGCTATGTGCTGACCCTGTTCCGCATCC
CGTACTCCCACAAGCTGAAGAACCAGAACGAGAAGCGACCGCCAATCCTG
CTGCAGCACGGATTGTTCAGTAACTCGGACTGCTGGCTGTCCTCCGGACC
GGACAACTCCCTGGCCTACCTGCTCGCGGATGCCGGATACGATGTGTGGC
TGGGCAATGCCCGTGGTAACATCTACTCGCGGAACAACATCATCATCTCG
CTGAACAGCCACAAGTTCTGGCACTTCGACTGGCACGAAATCGGCACCAT
CGACATCCCCGCCATGATCGACTACATCCTGGCGGATACCGGCTTCGATC
AGATACACTACGCCGGACACTCGCAAGGAACCACCGTGTACCTGGTGATG
CTTTCCGAGCGACCGGAGTACAATGCCCTCATTAAGTCCGGTCATTTGCT
GGCTCCATGTGCCTTCTTCGAGCACGGAACCTCCTTCATCTTCAATGCCC
TGGGTCCCCTGGTGGGTACACCCGGCGGCATCTGGAACCAACTGCTGGTG
GACACCGAACTGATTCCGAACAACAACCTGGTTAACCGATTGGTCGACAA
CAGTTGCCATCTATCCAACACGATTTGCAACAACGCCTTCATAATGTTTG
CCAATGGTGGATACGTTAATGCCAATGCGAGCTCCATGAGCGTCCTGATC
GAGACCCATCCGGCTGGATCCTCTAGCAA
BS09205.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5932-PA | 1200 | CG5932-RA | 1..863 | 17..879 | 4290 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:38:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mag-RA | 1477 | CG5932-RA | 22..884 | 17..879 | 4300 | 99.9 | Plus |
Lip3-RA | 1434 | CG8823-RA | 435..505 | 308..378 | 220 | 87.3 | Plus |
CG3635-RC | 1301 | CG3635-RC | 393..464 | 311..382 | 195 | 84.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:38:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20460704..20461516 | 17..829 | 4050 | 99.9 | Plus |
3L | 28110227 | 3L | 20461631..20461681 | 829..879 | 255 | 100 | Plus |
3R | 32079331 | 3R | 13371246..13371316 | 378..308 | 220 | 87.3 | Minus |
2L | 23513712 | 2L | 22182942..22183013 | 311..382 | 195 | 84.7 | Plus |
3R | 32079331 | 3R | 25901020..25901080 | 319..379 | 185 | 86.9 | Plus |
Blast to na_te.dros performed 2015-02-12 04:38:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 7745..7819 | 430..502 | 108 | 64 | Plus |
BS09205.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:30 Download gff for
BS09205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5932-PA | 1..861 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:10:05 Download gff for
BS09205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5932-PA | 1..861 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:51:05 Download gff for
BS09205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mag-RA | 22..882 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:10:20 Download gff for
BS09205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mag-RA | 22..882 | 17..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:10:20 Download gff for
BS09205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20460704..20461516 | 17..829 | 99 | -> | Plus |
3L | 20461632..20461679 | 830..877 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:51:05 Download gff for
BS09205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20453804..20454616 | 17..829 | 99 | -> | Plus |
arm_3L | 20454732..20454779 | 830..877 | 100 | | Plus |
BS09205.complete Sequence
1232 bp assembled on 2009-02-12
> BS09205.complete
GAAGTTATCAGTCGACATGAATCCTATCTTCTGCGCACTACTGTTCAGCT
TGGTGGCGGGTCTAGTCCTCGCCGAGAAGTCGGACTATTGTCTGAGCGAG
ATCGTCAAGTCGGACGAGAGGATCCGTTCGCACGGATATCCCACGGAGAC
TCACGAGGTGACCACCCAGGATGGCTATGTGCTGACCCTGTTCCGCATCC
CGTACTCCCACAAGCTGAAGAACCAGAACGAGAAGCGACCGCCAATCCTG
CTGCAGCACGGATTGTTCAGTAACTCGGACTGCTGGCTGTCCTCCGGACC
GGACAACTCCCTGGCCTACCTGCTCGCGGATGCCGGATACGATGTGTGGC
TGGGCAATGCCCGTGGTAACATCTACTCGCGGAACAACATCATCATCTCG
CTGAACAGCCACAAGTTCTGGCACTTCGACTGGCACGAAATCGGCACCAT
CGACATCCCCGCCATGATCGACTACATCCTGGCGGATACCGGCTTCGATC
AGATACACTACGCCGGACACTCGCAAGGAACCACCGTGTACCTGGTGATG
CTTTCCGAGCGACCGGAGTACAATGCCCTCATTAAGTCCGGTCATTTGCT
GGCTCCATGTGCCTTCTTCGAGCACGGAACCTCCTTCATCTTCAATGCCC
TGGGTCCCCTGGTGGGTACACCCGGCGGCATCTGGAACCAACTGCTGGTG
GACACCGAACTGATTCCGAACAACAACCTGGTTAACCGATTGGTCGACAA
CAGTTGCCATCTATCCAACACGATTTGCAACAACGCCTTCATAATGTTTG
CCAATGGTGGATACGTTAATGCCAATGCGAGCTCCATGAGCGTCCTGATC
GAGACCCATCCGGCTGGATCCTCTAGCAACCAGGGCATCCACTACCTGCA
GCTATGGAAGTCCCTCAAGTTCCGCCAGTACGACTGGGGCACAAAGAAGA
ACAACGAGCTGTATGGCCAGGATCTGCCTCCAGATTACGATCTCAGCAAG
ATCGTCGCACCCACCCACTTGTACTCCAGCACCAACGATGCCCTTTGCGG
ACCCGAAGACGTCAATACCCTGGTGGAGAACTTCCCGCACCTGACGGAGG
ACTACCGTGTGCCCGTCCAGAGTTTCAACCACTTGGACTTCATCATCGCC
AAGAACATGAAGGAGCTGGTCAACGATCCGATCATCGAACGCATTAACTC
CTACGAAGGTCGCTAGAAGCTTTCTAGACCAT
BS09205.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:21:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mag-RA | 1200 | CG5932-PA | 1..1200 | 17..1216 | 5985 | 99.9 | Plus |
Lip3-RA | 1185 | CG8823-PA | 277..347 | 308..378 | 220 | 87.3 | Plus |
CG3635-RC | 906 | CG3635-PC | 358..429 | 311..382 | 195 | 84.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:21:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mag-RA | 1477 | CG5932-RA | 22..1223 | 17..1218 | 5995 | 99.9 | Plus |
Lip3-RA | 1434 | CG8823-RA | 435..505 | 308..378 | 220 | 87.3 | Plus |
CG3635-RC | 1301 | CG3635-RC | 393..464 | 311..382 | 195 | 84.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:21:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20460704..20461516 | 17..829 | 4050 | 99.9 | Plus |
3L | 28110227 | 3L | 20461631..20462020 | 829..1218 | 1950 | 100 | Plus |
3R | 32079331 | 3R | 13371246..13371316 | 378..308 | 220 | 87.3 | Minus |
2L | 23513712 | 2L | 22182942..22183013 | 311..382 | 195 | 84.7 | Plus |
3R | 32079331 | 3R | 25901020..25901080 | 319..379 | 185 | 86.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:21:34 has no hits.
BS09205.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:31 Download gff for
BS09205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5932-RA | 6..1205 | 17..1216 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:44 Download gff for
BS09205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mag-RA | 22..1221 | 17..1216 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:19:45 Download gff for
BS09205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mag-RA | 22..1221 | 17..1216 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:19:45 Download gff for
BS09205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20460704..20461516 | 17..829 | 99 | -> | Plus |
3L | 20461632..20462018 | 830..1216 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:44 Download gff for
BS09205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20453804..20454616 | 17..829 | 99 | -> | Plus |
arm_3L | 20454732..20455118 | 830..1216 | 100 | | Plus |
BS09205.pep Sequence
Translation from 16 to 1215
> BS09205.pep
MNPIFCALLFSLVAGLVLAEKSDYCLSEIVKSDERIRSHGYPTETHEVTT
QDGYVLTLFRIPYSHKLKNQNEKRPPILLQHGLFSNSDCWLSSGPDNSLA
YLLADAGYDVWLGNARGNIYSRNNIIISLNSHKFWHFDWHEIGTIDIPAM
IDYILADTGFDQIHYAGHSQGTTVYLVMLSERPEYNALIKSGHLLAPCAF
FEHGTSFIFNALGPLVGTPGGIWNQLLVDTELIPNNNLVNRLVDNSCHLS
NTICNNAFIMFANGGYVNANASSMSVLIETHPAGSSSNQGIHYLQLWKSL
KFRQYDWGTKKNNELYGQDLPPDYDLSKIVAPTHLYSSTNDALCGPEDVN
TLVENFPHLTEDYRVPVQSFNHLDFIIAKNMKELVNDPIIERINSYEGR*
BS09205.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:58:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mag-PA | 399 | CG5932-PA | 1..399 | 1..399 | 2146 | 100 | Plus |
CG2772-PA | 416 | CG2772-PA | 26..410 | 23..399 | 894 | 46.4 | Plus |
CG31091-PC | 424 | CG31091-PC | 59..424 | 36..399 | 830 | 45.1 | Plus |
CG31091-PB | 424 | CG31091-PB | 59..424 | 36..399 | 830 | 45.1 | Plus |
CG31089-PA | 421 | CG31089-PA | 42..415 | 26..397 | 813 | 43.4 | Plus |