Clone Sequence Records
BS09206.3prime Sequence
929 bp (836 high quality bases) assembled on 2006-01-29
> BS09206.3prime
ATGGTCTAGAAAGCTTTCAGTCGACCAGGTGACGGCCATGGTCCTGCGGT
GTGGAGAAGATAATTGCGTAGATAAGGCCGTCGCGAACCGATTCGGTGGG
GTTGCCCACGTTGAACATGAACTTCACGCGATTGCAGTTGGCATCGGGCA
CACAGGAGTACATGGGATACCAGCCGGTCTTGTTGAACACCACGTAGATC
TTGTAGATCTGGTTTCGGTATATGTACACCGGTCGATCGAACGTGATGTC
CAGCAGCGAATCGTAACGCACGCGTGCCGTGCAGTGCGTGTATGTGATGC
GTGAGCCGTGCATGTCCTGGATGTGGGCGTACAGCACCTCGGTGTATCGT
TCCGTAAAACCGGCAGAAGTCATCAGCTCGCCGCACAGCACGCGCGTGGG
CACTTGGACGCCCAGGATCCAAATGTTGGTGTCCACCTGGAACGTTACGC
CCGCATCCGTGACGCTGGTGTTGCGGAAGTCAAATTGCCGGGTAAGGGAG
CGCATACAGTACGCGCGCACCATGTCGTTGTGCGAATTTCCAGCTGCGGA
TCCAGCTCCTCCAGCTGCAGCGCCGCCAGCGGGCGCCGGTGCGCCTCGAT
CGCCGCCATCATCATCATTGGCGGGCGCTGGGACTGGCGCTCCGCTCTCG
TAGCCCTCGCCGAAGCAGCGCAGTGGTGCTGGCGCAGGTGCGGCATCCGG
TGGGACGCCCACCGGTTCCGGCGGGCGGATGACCAATTCCTCGCCTGCGA
AGCCGAATCCCGTGCCCACGGATCCGAAACGGGGCGCAATGCCCATCATC
ATACCGCCGCCGGAGGGTCCTCCGCTGCGAACTGCCGGTCCCGGTCCCGG
GAACAGACGCCCGAGGGAGCGGCTCCAGTGCGATACGAGGAGGACAATTC
TCTCTGGGCGTGTCGGTGGCCCGACTCGT
BS09206.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17068-PA | 2085 | CG17068-RA | 1249..2085 | 853..17 | 4185 | 100 | Minus |
| CG17068-PA | 2085 | CG17068-RA | 1172..1249 | 929..852 | 390 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:19:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17068-RA | 2785 | CG17068-RA | 1312..2226 | 929..16 | 4550 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:19:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20248868..20249782 | 16..929 | 4525 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:19:42 has no hits.
BS09206.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:31 Download gff for
BS09206.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17068-PA | 1172..2085 | 17..929 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:10:07 Download gff for
BS09206.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17068-PA | 1172..2085 | 17..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:25:34 Download gff for
BS09206.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17068-RA | 1312..2229 | 13..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:31:40 Download gff for
BS09206.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17068-RA | 1312..2229 | 13..929 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:31:40 Download gff for
BS09206.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20248865..20249782 | 13..929 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:25:34 Download gff for
BS09206.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20119939..20120856 | 13..929 | 99 | | Plus |
BS09206.5prime Sequence
856 bp (782 high quality bases) assembled on 2006-01-28
> BS09206.5prime
GAAGTTATCTGTCGACATGGACATCGACTGGCAAAACGGCCTCACCGAGC
TGAAGGATCGGGGCCAGTACCTGCTCCACTCGGAGAAGTGGGCCGACTGC
CGCTTTCTGGTGGGTTCTTCGCCCACCCAGCGGCTCATTGCCGGCCACAA
GCTGCTACTGGCCATGGCTTCGCCGGTGTTCGAGCGAATGTTCTATGGCA
ACCTGCCCGATAAGACGGACCCCATCGTCATTCCGGACGTGCAGCCGGAG
GCGTTCGAGGCGATGCTGGAGTACATCTACACGGACCGCATCACCATTGG
GTCCTTCGACAAGGCCTGCGAGCTGTGCTACGTGGCCAAGAAGTACATGC
TGCCCCACGTGGTCACGCGCTGCACCCATTTCCTTTGGGCTGATCTTAGT
CCGAAAAACGCGTGCCGGGCGTACGAGTTTGCCAAGCTGTTCGATGAGCC
GCGCCTCATGCAAAGCAGCATGGATCTGATCGCGGCCAACACGCGCGAGG
TTCTGTCCGATCCCAGCTTCCTGGACATCGAGGTCTCCACCCTGATGGCC
ATTCTTGACCAGAATCGCCTGAACATCGACTCCGAGCTGGATTTGTTCAA
CTGCCTGCTGAAGTTTGCCAGTGAGCGGGGCATCCTGAACGAGTCCGGCC
AGGAAGAGACTGCTAGCGGAGGTCAGGTGCTGACCAAGGAATCGCCCGAC
AATGCTGCCGGCCATGTGCTGGTCGAAGAGATCAAGATGGAGCCCGATGT
GGCGGCCATGGTGCAGCACATGCACCAGGACGACGAGGCTGACAGCTTCG
AAACGGACGCTGGGATGGCTTCCACTTCCTCTGCGGCTGCCGCGGCTGCA
GCTGCG
BS09206.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17068-PA | 2085 | CG17068-RA | 1..840 | 17..856 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:38:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17068-RA | 2785 | CG17068-RA | 141..980 | 17..856 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:38:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20250114..20250953 | 856..17 | 4200 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:38:33 has no hits.
BS09206.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:32 Download gff for
BS09206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17068-PA | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:10:08 Download gff for
BS09206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17068-PA | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:51:03 Download gff for
BS09206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17068-RA | 141..980 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:35 Download gff for
BS09206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17068-RA | 141..980 | 17..856 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:35 Download gff for
BS09206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20250114..20250953 | 17..856 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:51:03 Download gff for
BS09206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20121188..20122027 | 17..856 | 100 | | Minus |
BS09206.complete Sequence
2117 bp assembled on 2008-08-14
GenBank Submission: FJ638821
> BS09206.complete
GAAGTTATCTGTCGACATGGACATCGACTGGCAAAACGGCCTCACCGAGC
TGAAGGATCGGGGCCAGTACCTGCTCCACTCGGAGAAGTGGGCCGACTGC
CGCTTTCTGGTGGGTTCTTCGCCCACCCAGCGGCTCATTGCCGGCCACAA
GCTGCTACTGGCCATGGCTTCGCCGGTGTTCGAGCGAATGTTCTATGGCA
ACCTGCCCGATAAGACGGACCCCATCGTCATTCCGGACGTGCAGCCGGAG
GCGTTCGAGGCGATGCTGGAGTACATCTACACGGACCGCATCACCATTGG
GTCCTTCGACAAGGCCTGCGAGCTGTGCTACGTGGCCAAGAAGTACATGC
TGCCCCACGTGGTCACGCGCTGCACCCATTTCCTTTGGGCTGATCTTAGT
CCGAAAAACGCGTGCCGGGCGTACGAGTTTGCCAAGCTGTTCGATGAGCC
GCGCCTCATGCAAAGCAGCATGGATCTGATCGCGGCCAACACGCGCGAGG
TTCTGTCCGATCCCAGCTTCCTGGACATCGAGGTCTCCACCCTGATGGCC
ATTCTTGACCAGAATCGCCTGAACATCGACTCCGAGCTGGATTTGTTCAA
CTGCCTGCTGAAGTTTGCCAGTGAGCGGGGCATCCTGAACGAGTCCGGCC
AGGAAGAGACTGCTAGCGGAGGTCAGGTGCTGACCAAGGAATCGCCCGAC
AATGCTGCCGGCCATGTGCTGGTCGAAGAGATCAAGATGGAGCCCGATGT
GGCGGCCATGGTGCAGCACATGCACCAGGACGACGAGGCTGACAGCTTCG
AAACGGACGCTGGGATGGCTTCCACTTCCTCTGCGGCTGCCGCGGCTGCA
GCTGCGCCCACGGCTGCCTCCCCGCCGCTGGACGTGGCTTCCGGCTCCGA
CGACCTGGTAATCATCGATAGCGACGCTTCGGCCGATGCCGCCGCCAACA
TGATTAACATCATGGACGCCCAGCGCACCATTCTCGATGGCGCCATGCTC
AGGCAGGCGGTCAAAAAGATTCGCTTTCTCACCATGACGCCGCAGCAGTT
CGCGGAGGGACCGGCCCGTTCCAAGCTGCTGCAGCAGCACGAGGCCCTCT
CCATCCTGATTAAGATCTCCAGTCCCTCGCTCAACGATTGTCACATGCCC
GAAGGCTTCTGCGTGTCGCGGAGCACGCGCAACTTCTACGAGTCGGGCCA
CCGACACGCCCAGAGAGAATTGTCCTCCTCGTATCGCACTGGAGCCGCTC
CCTCGGGCGTCTGTTTCCCGGGACCGGGACCGGCAGTTCGCAGCGGAGGA
CCCTCCGGCGGCGGTATGATGATGGGCATTGCGCCCCGTTTCGGATCCGT
GGGCACGGGATTCGGCTTCGCAGGCGAGGAATTGGTCATCCGCCCGCCGG
AACCGGTGGGCGTCCCACCGGATGCCGCACCTGCGCCAGCACCACTGCGC
TGCTTCGGCGAGGGCTACGAGAGCGGAGCGCCAGTCCCAGCGCCCGCCAA
TGATGATGATGGCGGCGATCGAGGCGCACCGGCGCCCGCTGGCGGCGCTG
CAGCTGGAGGAGCTGGATCCGCAGCTGGAAATTCGCACAACGACATGGTG
CGCGCGTACTGTATGCGCTCCCTTACCCGGCAATTTGACTTCCGCAACAC
CAGCGTCACGGATGCGGGCGTAACGTTCCAGGTGGACACCAACATTTGGA
TCCTGGGCGTCCAAGTGCCCACGCGCGTGCTGTGCGGCGAGCTGATGACT
TCTGCCGGTTTTACGGAACGATACACCGAGGTGCTGTACGCCCACATCCA
GGACATGCACGGCTCACGCATCACATACACGCACTGCACGGCACGCGTGC
GTTACGATTCGCTGCTGGACATCACGTTCGATCGACCGGTGTACATATAC
CGAAACCAGATCTACAAGATCTACGTGGTGTTCAACAAGACCGGCTGGTA
TCCCATGTACTCCTGTGTGCCCGATGCCAACTGCAATCGCGTGAAGTTCA
TGTTCAACGTGGGCAACCCCACCGAATCGGTTCGCGACGGCCTTATCTAC
GCAATTATCTTCTCCACACCGCAGGACCATGGCCGTCACCTGGTCGACTG
AAAGCTTTCTAGACCAT
BS09206.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:28:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17068-RA | 2085 | CG17068-PA | 1..2085 | 17..2101 | 10425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17068-RA | 2785 | CG17068-RA | 141..2226 | 17..2102 | 10430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20248868..20250953 | 2102..17 | 10430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:28:13 has no hits.
BS09206.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:18:37 Download gff for
BS09206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17068-RA | 490..2578 | 17..2105 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:58 Download gff for
BS09206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17068-RA | 141..2224 | 17..2100 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:13:10 Download gff for
BS09206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17068-RA | 490..2573 | 17..2100 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:18 Download gff for
BS09206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17068-RA | 141..2224 | 17..2100 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:18 Download gff for
BS09206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20248870..20250953 | 17..2100 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:58 Download gff for
BS09206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20119944..20122027 | 17..2100 | 100 | | Minus |
BS09206.pep Sequence
Translation from 16 to 2100
> BS09206.pep
MDIDWQNGLTELKDRGQYLLHSEKWADCRFLVGSSPTQRLIAGHKLLLAM
ASPVFERMFYGNLPDKTDPIVIPDVQPEAFEAMLEYIYTDRITIGSFDKA
CELCYVAKKYMLPHVVTRCTHFLWADLSPKNACRAYEFAKLFDEPRLMQS
SMDLIAANTREVLSDPSFLDIEVSTLMAILDQNRLNIDSELDLFNCLLKF
ASERGILNESGQEETASGGQVLTKESPDNAAGHVLVEEIKMEPDVAAMVQ
HMHQDDEADSFETDAGMASTSSAAAAAAAAPTAASPPLDVASGSDDLVII
DSDASADAAANMINIMDAQRTILDGAMLRQAVKKIRFLTMTPQQFAEGPA
RSKLLQQHEALSILIKISSPSLNDCHMPEGFCVSRSTRNFYESGHRHAQR
ELSSSYRTGAAPSGVCFPGPGPAVRSGGPSGGGMMMGIAPRFGSVGTGFG
FAGEELVIRPPEPVGVPPDAAPAPAPLRCFGEGYESGAPVPAPANDDDGG
DRGAPAPAGGAAAGGAGSAAGNSHNDMVRAYCMRSLTRQFDFRNTSVTDA
GVTFQVDTNIWILGVQVPTRVLCGELMTSAGFTERYTEVLYAHIQDMHGS
RITYTHCTARVRYDSLLDITFDRPVYIYRNQIYKIYVVFNKTGWYPMYSC
VPDANCNRVKFMFNVGNPTESVRDGLIYAIIFSTPQDHGRHLVD*
BS09206.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:57:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17068-PA | 694 | CG17068-PA | 1..694 | 1..694 | 3645 | 100 | Plus |
| lute-PA | 677 | CG5319-PA | 188..412 | 2..222 | 324 | 33.8 | Plus |
| lute-PC | 727 | CG43226-PC | 238..462 | 2..222 | 324 | 33.8 | Plus |
| lute-PB | 727 | CG43226-PB | 238..462 | 2..222 | 324 | 33.8 | Plus |
| lute-PD | 735 | CG43226-PD | 188..412 | 2..222 | 324 | 33.8 | Plus |
